Started by upstream project "BIOFORMATS-test-repo" build number 133
originally caused by:
Started by upstream project "Trigger" build number 153
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins6546326233031072213.sh
+ '[' ivision = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_20956_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:52:44,400 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:52:44,402 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 02:52:44,402 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:52:44,403 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:52:44,404 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:52:44,404 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:52:44,404 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:52:44,404 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:52:44,405 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:52:44,405 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:52:44,405 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:52:44,405 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:52:44,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:52:44,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:52:44,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:52:44,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:52:44,681 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:52:44,681 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:52:44,681 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:52:44,682 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:52:44,682 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 02:52:44,683 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 02:52:44,683 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 278 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-26 02:52:44,693] [main] java.version = 1.8.0_342
[testng] 02:52:44,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:52:44,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:52:44,744 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-26_02-52-44.log]
[testng] 02:52:44,746 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-07-26 02:52:44,748] [main] testng.directory = /data
[testng] [2024-07-26 02:52:44,748] [main] testng.configDirectory = /config
[testng] [2024-07-26 02:52:44,767] [main] testng.multiplier = 1.0
[testng] [2024-07-26 02:52:44,767] [main] testng.in-memory = false
[testng] [2024-07-26 02:52:44,767] [main] testng.allow-missing = false
[testng] [2024-07-26 02:52:44,767] [main] user.language = en
[testng] [2024-07-26 02:52:44,767] [main] user.country = ${user.country}
[testng] [2024-07-26 02:52:44,768] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-07-26 02:52:45,850] [main] ----------------------------------------
[testng] [2024-07-26 02:52:45,850] [main] Total files: 17
[testng] [2024-07-26 02:52:45,850] [main] Scan time: 1.082 s (63 ms/file)
[testng] [2024-07-26 02:52:45,850] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 17 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-26 02:52:46,969] [pool-1-thread-1] Initializing /data/samples/16-bit 320x256x3.ipm:
[testng] 02:52:46,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:52:46,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:52:46,971 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-26_02-52-46.log]
[testng] 02:52:46,971 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c00461e - End of configuration.
[testng] [2024-07-26 02:52:46,994] [pool-1-thread-12] Initializing /data/samples/08Bit 320x256xthree.ipm:
[testng] 02:52:46,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:52:46,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:52:46,995 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-26_02-52-46.log]
[testng] 02:52:46,996 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3aefffd9 - End of configuration.
[testng] [2024-07-26 02:52:47,006] [pool-1-thread-11] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm:
[testng] 02:52:47,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:52:47,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:52:47,007 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-26_02-52-47.log]
[testng] 02:52:47,007 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f45af51 - End of configuration.
[testng] [2024-07-26 02:52:47,021] [pool-1-thread-10] Initializing /data/samples/08Bit 320x256x1.ipm:
[testng] 02:52:47,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:52:47,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:52:47,022 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-26_02-52-47.log]
[testng] 02:52:47,022 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d550c3a - End of configuration.
[testng] [2024-07-26 02:52:47,033] [pool-1-thread-9] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm:
[testng] 02:52:47,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:52:47,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:52:47,035 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-26_02-52-47.log]
[testng] 02:52:47,035 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34582ed - End of configuration.
[testng] [2024-07-26 02:52:47,070] [pool-1-thread-8] Initializing /data/nigel/CD48_75_24hrColor.ipm:
[testng] 02:52:47,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:52:47,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:52:47,070 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-26_02-52-47.log]
[testng] 02:52:47,071 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59838a9a - End of configuration.
[testng] [2024-07-26 02:52:47,083] [pool-1-thread-7] Initializing /data/samples/48bit 150x100x3.ipm:
[testng] 02:52:47,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:52:47,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:52:47,084 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-26_02-52-47.log]
[testng] 02:52:47,084 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42ee1e4c - End of configuration.
[testng] [2024-07-26 02:52:47,093] [pool-1-thread-6] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center:
[testng] 02:52:47,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:52:47,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:52:47,094 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-26_02-52-47.log]
[testng] 02:52:47,094 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f9603c5 - End of configuration.
[testng] [2024-07-26 02:52:47,109] [pool-1-thread-5] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm:
[testng] 02:52:47,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:52:47,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:52:47,110 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-26_02-52-47.log]
[testng] 02:52:47,111 |-INFO in ch.qos.logback.core.sift.SiftProcessor@482bf30f - End of configuration.
[testng] [2024-07-26 02:52:47,125] [pool-1-thread-4] Initializing /data/jcb/200810162/mut BA no bio.ipm:
[testng] 02:52:47,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:52:47,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:52:47,126 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-26_02-52-47.log]
[testng] 02:52:47,127 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ff7bee9 - End of configuration.
[testng] [2024-07-26 02:52:47,146] [pool-1-thread-3] Initializing /data/christopher/Color48 Copy.ipm:
[testng] 02:52:47,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:52:47,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:52:47,147 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-26_02-52-47.log]
[testng] 02:52:47,147 |-INFO in ch.qos.logback.core.sift.SiftProcessor@82e879f - End of configuration.
[testng] [2024-07-26 02:52:47,161] [pool-1-thread-2] Initializing /data/jcb/200810162/wt BA plus bio.ipm:
[testng] 02:52:47,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:52:47,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:52:47,162 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-26_02-52-47.log]
[testng] 02:52:47,163 |-INFO in ch.qos.logback.core.sift.SiftProcessor@788fc68 - End of configuration.
[testng] [2024-07-26 02:52:49,024] [pool-1-thread-7] Initializing /data/jcb/200810162/mutBA plus bio.ipm:
[testng] [2024-07-26 02:52:49,040] [pool-1-thread-9] Initializing /data/samples/24bit 300x200x3.ipm:
[testng] [2024-07-26 02:52:49,058] [pool-1-thread-4] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm:
[testng] [2024-07-26 02:52:49,095] [pool-1-thread-2] Initializing /data/jcb/200810162/wt ba no bio.ipm:
[testng] [2024-07-26 02:52:49,112] [pool-1-thread-6] Initializing /data/samples/16bit 320x256x1.ipm:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 901, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 8 seconds
Finished: SUCCESS