Started by upstream project "BIOFORMATS-test-repo" build number 134
originally caused by:
Started by upstream project "Trigger" build number 154
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins17852851653283680394.sh
+ '[' psd = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_21098_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 02:19:18,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:19:18,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:19:18,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:19:18,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:19:18,086 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:19:18,087 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:19:18,087 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:19:18,088 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:19:18,089 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@41a0aa7d - End of configuration.
[testng] 02:19:18,090 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6574a52c - Registering current configuration as safe fallback point
[testng] 02:19:18,091 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c1a5b54 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 454 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-27 02:19:18,111] [main] java.version = 11.0.16
[testng] 02:19:18,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:19:18,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:19:18,192 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-27_02-19-18.log]
[testng] 02:19:18,194 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-07-27 02:19:18,196] [main] testng.directory = /data
[testng] [2024-07-27 02:19:18,196] [main] testng.configDirectory = /config
[testng] [2024-07-27 02:19:18,214] [main] testng.multiplier = 1.0
[testng] [2024-07-27 02:19:18,216] [main] testng.in-memory = false
[testng] [2024-07-27 02:19:18,217] [main] testng.allow-missing = false
[testng] [2024-07-27 02:19:18,217] [main] user.language = en
[testng] [2024-07-27 02:19:18,217] [main] user.country = ${user.country}
[testng] [2024-07-27 02:19:18,217] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-07-27 02:19:18,895] [main] ----------------------------------------
[testng] [2024-07-27 02:19:18,896] [main] Total files: 18
[testng] [2024-07-27 02:19:18,896] [main] Scan time: 0.678 s (37 ms/file)
[testng] [2024-07-27 02:19:18,896] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-27 02:19:20,666] [pool-1-thread-1] Initializing /data/qa-4117/caspase gel-1.psd:
[testng] 02:19:20,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:19:20,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:19:20,671 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-27_02-19-20.log]
[testng] 02:19:20,672 |-INFO in ch.qos.logback.core.sift.SiftProcessor@771a0411 - End of configuration.
[testng] [2024-07-27 02:19:20,738] [pool-1-thread-12] Initializing /data/misc/glossy_buttons.psd:
[testng] 02:19:20,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:19:20,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:19:20,749 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-27_02-19-20.log]
[testng] 02:19:20,750 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ba6bd9b - End of configuration.
[testng] [2024-07-27 02:19:20,782] [pool-1-thread-11] Initializing /data/misc/smilie.psd:
[testng] 02:19:20,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:19:20,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:19:20,784 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-27_02-19-20.log]
[testng] 02:19:20,785 |-INFO in ch.qos.logback.core.sift.SiftProcessor@aa02857 - End of configuration.
[testng] [2024-07-27 02:19:20,801] [pool-1-thread-10] Initializing /data/ascb/423.psd:
[testng] 02:19:20,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:19:20,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:19:20,803 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-27_02-19-20.log]
[testng] 02:19:20,803 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4455ff72 - End of configuration.
[testng] [2024-07-27 02:19:20,895] [pool-1-thread-9] Initializing /data/ascb/thin&thick fill.2.psd:
[testng] 02:19:20,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:19:20,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:19:20,897 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-27_02-19-20.log]
[testng] 02:19:20,897 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52a8d9ca - End of configuration.
[testng] [2024-07-27 02:19:20,959] [pool-1-thread-8] Initializing /data/jcb/Fig5A_siHP16h.tif:
[testng] 02:19:20,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:19:20,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:19:20,961 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-27_02-19-20.log]
[testng] 02:19:20,961 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b30aa9c - End of configuration.
[testng] [2024-07-27 02:19:20,994] [pool-1-thread-7] Initializing /data/qa-7632/23283078__NA_NA_27343.psd:
[testng] 02:19:20,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:19:20,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:19:20,996 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-27_02-19-20.log]
[testng] 02:19:20,997 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a53f342 - End of configuration.
[testng] [2024-07-27 02:19:21,066] [pool-1-thread-6] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd:
[testng] 02:19:21,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:19:21,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:19:21,068 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-27_02-19-21.log]
[testng] 02:19:21,069 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7616bded - End of configuration.
[testng] [2024-07-27 02:19:21,097] [pool-1-thread-5] Initializing /data/jcb/Fig5A_sip1506h.tif:
[testng] 02:19:21,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:19:21,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:19:21,111 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-27_02-19-21.log]
[testng] 02:19:21,113 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15c47c58 - End of configuration.
[testng] [2024-07-27 02:19:21,163] [pool-1-thread-4] Initializing /data/cris/house.tif:
[testng] 02:19:21,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:19:21,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:19:21,165 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-27_02-19-21.log]
[testng] 02:19:21,166 |-INFO in ch.qos.logback.core.sift.SiftProcessor@aa33245 - End of configuration.
[testng] [2024-07-27 02:19:21,269] [pool-1-thread-3] Initializing /data/big-images/8kx8k.psd:
[testng] 02:19:21,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:19:21,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:19:21,273 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-27_02-19-21.log]
[testng] 02:19:21,274 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32219053 - End of configuration.
[testng] [2024-07-27 02:19:21,309] [pool-1-thread-2] Initializing /data/ascb/607x.psd:
[testng] 02:19:21,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:19:21,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:19:21,310 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-27_02-19-21.log]
[testng] 02:19:21,311 |-INFO in ch.qos.logback.core.sift.SiftProcessor@632feee0 - End of configuration.
[testng] [2024-07-27 02:19:24,427] [pool-1-thread-4] Initializing /data/misc/vig_drawing_1.psd:
[testng] [2024-07-27 02:19:24,919] [pool-1-thread-6] Initializing /data/jcb/Fig5A_sicont6h.tif:
[testng] [2024-07-27 02:19:24,935] [pool-1-thread-11] Initializing /data/misc/glossy_orbs.psd:
[testng] [2024-07-27 02:19:24,953] [pool-1-thread-12] Initializing /data/misc/venus_composite_8bit.psd:
[testng] [2024-07-27 02:19:25,463] [pool-1-thread-8] Initializing /data/simon/colour_separated_image.psd:
[testng] [2024-07-27 02:19:25,487] [pool-1-thread-5] Initializing /data/misc/venus_composite.psd:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 40 seconds
Finished: SUCCESS