Started by upstream project "BIOFORMATS-test-repo" build number 135
originally caused by:
Started by upstream project "Trigger" build number 155
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins18095813702931331992.sh
+ '[' gatan = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_21132_merge_ci -v /uod/idr/repos/curated/gatan:/data -v /uod/idr-scratch/merge-ci/curated/gatan:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:22:08,914 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:22:08,916 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 01:22:08,916 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:22:08,917 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:22:08,917 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:22:08,917 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:22:08,918 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:22:08,918 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:22:08,918 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:22:08,919 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:22:08,919 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:22:08,919 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:22:09,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:22:09,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:22:09,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:22:09,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:22:09,119 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:22:09,120 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:22:09,120 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:22:09,120 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:22:09,120 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 01:22:09,121 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 01:22:09,121 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 203 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-28 01:22:09,130] [main] java.version = 17.0.2
[testng] 01:22:09,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:22:09,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:09,188 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-28_01-22-09.log]
[testng] 01:22:09,190 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-07-28 01:22:09,193] [main] testng.directory = /data
[testng] [2024-07-28 01:22:09,193] [main] testng.configDirectory = /config
[testng] [2024-07-28 01:22:09,205] [main] testng.multiplier = 1.0
[testng] [2024-07-28 01:22:09,206] [main] testng.in-memory = false
[testng] [2024-07-28 01:22:09,207] [main] testng.allow-missing = false
[testng] [2024-07-28 01:22:09,207] [main] user.language = en
[testng] [2024-07-28 01:22:09,207] [main] user.country = ${user.country}
[testng] [2024-07-28 01:22:09,207] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-07-28 01:22:10,163] [main] ----------------------------------------
[testng] [2024-07-28 01:22:10,163] [main] Total files: 103
[testng] [2024-07-28 01:22:10,163] [main] Scan time: 0.956 s (9 ms/file)
[testng] [2024-07-28 01:22:10,163] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 98 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-28 01:22:17,374] [pool-1-thread-1] Initializing /data/chip/Nanogold-1.dm3:
[testng] 01:22:17,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:22:17,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:17,375 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-28_01-22-17.log]
[testng] 01:22:17,376 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48ae8b0e - End of configuration.
[testng] [2024-07-28 01:22:17,399] [pool-1-thread-12] Initializing /data/public/imagesc-36590/SmallMontage0005.dm4:
[testng] 01:22:17,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:22:17,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:17,401 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-28_01-22-17.log]
[testng] 01:22:17,401 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b11a273 - End of configuration.
[testng] [2024-07-28 01:22:17,415] [pool-1-thread-11] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-256x256.tif:
[testng] 01:22:17,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:22:17,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:17,416 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-28_01-22-17.log]
[testng] 01:22:17,417 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fc30979 - End of configuration.
[testng] [2024-07-28 01:22:17,447] [pool-1-thread-10] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0050.dm4:
[testng] 01:22:17,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:22:17,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:17,448 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-28_01-22-17.log]
[testng] 01:22:17,449 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1991c92e - End of configuration.
[testng] [2024-07-28 01:22:17,462] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0009.dm4:
[testng] 01:22:17,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:22:17,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:17,463 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-28_01-22-17.log]
[testng] 01:22:17,463 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24a50520 - End of configuration.
[testng] [2024-07-28 01:22:17,476] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0016.dm4:
[testng] 01:22:17,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:22:17,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:17,477 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-28_01-22-17.log]
[testng] 01:22:17,477 |-INFO in ch.qos.logback.core.sift.SiftProcessor@158b0380 - End of configuration.
[testng] [2024-07-28 01:22:17,489] [pool-1-thread-7] Initializing /data/jayne/AM-2/MonGb2-S7.dm3:
[testng] 01:22:17,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:22:17,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:17,491 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-28_01-22-17.log]
[testng] 01:22:17,491 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f4bd3f2 - End of configuration.
[testng] [2024-07-28 01:22:17,507] [pool-1-thread-6] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0047.dm4:
[testng] 01:22:17,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:22:17,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:17,508 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-28_01-22-17.log]
[testng] 01:22:17,509 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a02f3df - End of configuration.
[testng] [2024-07-28 01:22:17,578] [pool-1-thread-5] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.tif:
[testng] 01:22:17,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:22:17,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:17,580 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-28_01-22-17.log]
[testng] 01:22:17,581 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49e1efa8 - End of configuration.
[testng] [2024-07-28 01:22:17,881] [pool-1-thread-4] Initializing /data/public/imagesc-36590/SmallMontage0000.dm4:
[testng] 01:22:17,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:22:17,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:17,882 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-28_01-22-17.log]
[testng] 01:22:17,883 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dc69032 - End of configuration.
[testng] [2024-07-28 01:22:17,899] [pool-1-thread-3] Initializing /data/jay/samples/APC2a-e4.tif:
[testng] 01:22:17,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:22:17,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:17,900 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-28_01-22-17.log]
[testng] 01:22:17,901 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51cffc54 - End of configuration.
[testng] [2024-07-28 01:22:17,993] [pool-1-thread-2] Initializing /data/public/imagesc-36590/SmallMontage0007.dm4:
[testng] 01:22:17,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:22:17,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:17,996 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-28_01-22-17.log]
[testng] 01:22:17,996 |-INFO in ch.qos.logback.core.sift.SiftProcessor@120def1a - End of configuration.
[testng] [2024-07-28 01:22:19,406] [pool-1-thread-2] Initializing /data/public/imagesc-36590/SmallMontage0008.dm4:
[testng] [2024-07-28 01:22:19,426] [pool-1-thread-12] Initializing /data/jay/samples/APC2a-e3.tif:
[testng] [2024-07-28 01:22:19,507] [pool-1-thread-4] Initializing /data/jayne/AM-2/MonGb3-S1.dm3:
[testng] [2024-07-28 01:22:19,532] [pool-1-thread-11] Initializing /data/jay/camtest1.dm3:
[testng] [2024-07-28 01:22:19,923] [pool-1-thread-3] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0052.dm4:
[testng] [2024-07-28 01:22:19,939] [pool-1-thread-2] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362-smaller.tif:
[testng] [2024-07-28 01:22:20,626] [pool-1-thread-9] Initializing /data/jay/samples/APC2a-e5.tif:
[testng] [2024-07-28 01:22:20,724] [pool-1-thread-8] Initializing /data/melissa/annotation-test.dm3:
[testng] [2024-07-28 01:22:20,838] [pool-1-thread-12] Initializing /data/public/imagesc-36590/SmallMontage0006.dm4:
[testng] [2024-07-28 01:22:21,022] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0002.dm4:
[testng] [2024-07-28 01:22:21,270] [pool-1-thread-2] Initializing /data/jay/smallerfile.dm3:
[testng] [2024-07-28 01:22:21,279] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0003.dm4:
[testng] [2024-07-28 01:22:21,700] [pool-1-thread-9] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-480x480.tif:
[testng] [2024-07-28 01:22:21,894] [pool-1-thread-2] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0049.dm4:
[testng] [2024-07-28 01:22:22,435] [pool-1-thread-9] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-363.dm3:
[testng] [2024-07-28 01:22:22,910] [pool-1-thread-7] Initializing /data/public/imagesc-36590/SmallMontage0001.dm4:
[testng] [2024-07-28 01:22:23,269] [pool-1-thread-8] Initializing /data/imagesc-3719/Heart_BSE_slice_0019.dm4:
[testng] [2024-07-28 01:22:23,451] [pool-1-thread-5] Initializing /data/qa-21647/Sample2_L1-0002.dm4:
[testng] [2024-07-28 01:22:23,819] [pool-1-thread-7] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-26000X-Sindhu-364.tif:
[testng] [2024-07-28 01:22:23,917] [pool-1-thread-12] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0048.dm4:
[testng] [2024-07-28 01:22:24,505] [pool-1-thread-5] Initializing /data/jay/dnasample.tif:
[testng] [2024-07-28 01:22:24,642] [pool-1-thread-4] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0013.dm4:
[testng] [2024-07-28 01:22:25,140] [pool-1-thread-11] Initializing /data/jay/samples/APC2a-e4.dm3:
[testng] [2024-07-28 01:22:25,890] [pool-1-thread-1] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.tif:
[testng] [2024-07-28 01:22:25,997] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0010.dm4:
[testng] [2024-07-28 01:22:26,276] [pool-1-thread-4] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0004.dm4:
[testng] [2024-07-28 01:22:27,165] [pool-1-thread-1] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0053.dm4:
[testng] [2024-07-28 01:22:28,177] [pool-1-thread-11] Initializing /data/jay/recAmag6500dm.dm3:
[testng] [2024-07-28 01:22:28,190] [pool-1-thread-9] Initializing /data/public/imagesc-36590/SmallMontage0002.dm4:
[testng] [2024-07-28 01:22:28,478] [pool-1-thread-8] Initializing /data/public/imagesc-36590/SmallMontage0004.dm4:
[testng] [2024-07-28 01:22:28,577] [pool-1-thread-9] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.dm4:
[testng] [2024-07-28 01:22:28,687] [pool-1-thread-4] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-128x128.tif:
[testng] [2024-07-28 01:22:28,740] [pool-1-thread-7] Initializing /data/jay/ViewDMtest.dm3:
[testng] [2024-07-28 01:22:28,959] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0001.dm4:
[testng] [2024-07-28 01:22:29,110] [pool-1-thread-9] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0046.dm4:
[testng] [2024-07-28 01:22:29,152] [pool-1-thread-4] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0000.dm4:
[testng] [2024-07-28 01:22:31,012] [pool-1-thread-5] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.dm3:
[testng] [2024-07-28 01:22:31,995] [pool-1-thread-4] Initializing /data/jayne/AM-2/MonGb2-S8.dm3:
[testng] [2024-07-28 01:22:32,354] [pool-1-thread-8] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-362.tif:
[testng] [2024-07-28 01:22:34,335] [pool-1-thread-11] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-96x96.tif:
[testng] [2024-07-28 01:22:34,625] [pool-1-thread-11] Initializing /data/jayne/AM-2/MonGb3-S3.dm3:
[testng] [2024-07-28 01:22:34,639] [pool-1-thread-7] Initializing /data/nuno/Prefix_3VBSED_stack_30_slice_0290.dm3:
[testng] [2024-07-28 01:22:36,573] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0017.dm4:
[testng] [2024-07-28 01:22:36,854] [pool-1-thread-4] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0018.dm4:
[testng] [2024-07-28 01:22:38,380] [pool-1-thread-8] Initializing /data/nuno/Prefix_3VBSED_slice_0011.dm3:
[testng] [2024-07-28 01:22:39,121] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0015.dm4:
[testng] [2024-07-28 01:22:39,430] [pool-1-thread-4] Initializing /data/jay/recAmaghi.dm3:
[testng] [2024-07-28 01:22:39,522] [pool-1-thread-11] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.tif:
[testng] [2024-07-28 01:22:39,975] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0014.dm4:
[testng] [2024-07-28 01:22:41,273] [pool-1-thread-5] Initializing /data/jay/biosamplefullframetif.tif:
[testng] [2024-07-28 01:22:41,965] [pool-1-thread-8] Initializing /data/qa-7642/8.dm4:
[testng] [2024-07-28 01:22:43,958] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0007.dm4:
[testng] [2024-07-28 01:22:44,414] [pool-1-thread-4] Initializing /data/imagesc-3719/Prefix_BSE_slice_0001.dm4:
[testng] [2024-07-28 01:22:45,073] [pool-1-thread-11] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0045.dm4:
[testng] [2024-07-28 01:22:45,270] [pool-1-thread-7] Initializing /data/jay/biosamplefullframe.dm3:
[testng] [2024-07-28 01:22:46,390] [pool-1-thread-8] Initializing /data/samples/test-tiles.dm3:
[testng] [2024-07-28 01:22:46,695] [pool-1-thread-8] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-799x799.tif:
[testng] [2024-07-28 01:22:46,776] [pool-1-thread-5] Initializing /data/qa-21761/example.dm4:
[testng] [2024-07-28 01:22:46,832] [pool-1-thread-12] Initializing /data/qa-11392/Example_Gatan_File.dm4:
[testng] [2024-07-28 01:22:47,363] [pool-1-thread-2] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362.tif:
[testng] [2024-07-28 01:22:47,697] [pool-1-thread-3] Initializing /data/jay/DMtest2.dm3:
[testng] [2024-07-28 01:22:47,867] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0019.dm4:
[testng] [2024-07-28 01:22:47,983] [pool-1-thread-5] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-1020x1020.tif:
[testng] [2024-07-28 01:22:48,228] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0011.dm4:
[testng] [2024-07-28 01:22:49,037] [pool-1-thread-5] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-360.tif:
[testng] [2024-07-28 01:22:49,270] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0006.dm4:
[testng] [2024-07-28 01:22:49,493] [pool-1-thread-6] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.dm3:
[testng] [2024-07-28 01:22:50,022] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0012.dm4:
[testng] [2024-07-28 01:22:50,060] [pool-1-thread-10] Initializing /data/public/EMPIAR/EMPIAR-10013/BGal_000438_frames.dm4:
[testng] [2024-07-28 01:22:50,675] [pool-1-thread-7] Initializing /data/ofra/lowloss.dm3:
[testng] [2024-07-28 01:22:50,827] [pool-1-thread-7] Initializing /data/jayne/AM-2/MonGb2-S9.dm3:
[testng] [2024-07-28 01:22:51,342] [pool-1-thread-1] Initializing /data/jay/dnasample1.dm3:
[testng] [2024-07-28 01:22:52,422] [pool-1-thread-8] Initializing /data/ofra/Co on INT 28-12-10.11.dm3:
[testng] [2024-07-28 01:22:52,763] [pool-1-thread-3] Initializing /data/thorsten/60kx_HAADF_03.dm3:
[testng] [2024-07-28 01:22:52,794] [pool-1-thread-2] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0005.dm4:
[testng] [2024-07-28 01:22:53,163] [pool-1-thread-8] Initializing /data/jay/graphitedm3.dm3:
[testng] [2024-07-28 01:22:53,351] [pool-1-thread-3] Initializing /data/jay/DMtest.dm3:
[testng] [2024-07-28 01:22:53,483] [pool-1-thread-9] Initializing /data/samples/mode-metadata/mode_format_test.dm3:
[testng] [2024-07-28 01:22:54,158] [pool-1-thread-6] Initializing /data/jay/samples/APC2a-e3.dm3:
[testng] [2024-07-28 01:22:54,193] [pool-1-thread-7] Initializing /data/jay/samples/APC2a-e5.dm3:
[testng] [2024-07-28 01:22:54,247] [pool-1-thread-5] Initializing /data/public/imagesc-36590/SmallMontage0003.dm4:
[testng] [2024-07-28 01:22:54,644] [pool-1-thread-5] Initializing /data/jay/Carbon.34.dm3:
[testng] [2024-07-28 01:22:55,063] [pool-1-thread-7] Initializing /data/melissa/annotation-test.tif:
[testng] [2024-07-28 01:22:55,090] [pool-1-thread-6] Initializing /data/qa-8007/Prefix_3VBSED_slice_0011.dm3:
[testng] [2024-07-28 01:22:55,145] [pool-1-thread-2] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0008.dm4:
[testng] [2024-07-28 01:22:55,372] [pool-1-thread-7] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0051.dm4:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 5194, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 12 seconds
Finished: SUCCESS