Started by upstream project "BIOFORMATS-test-repo" build number 18
originally caused by:
Started by upstream project "Trigger" build number 21
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins16387392901484090105.sh
+ '[' fei = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_2132_merge_ci -v /uod/idr/repos/curated/fei:/data -v /uod/idr-scratch/merge-ci/curated/fei:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:23:21,886 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:23:21,887 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 00:23:21,887 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:23:21,889 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:23:21,890 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:23:21,890 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:23:21,891 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:23:21,891 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:23:21,891 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:23:21,892 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:23:21,892 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:23:21,893 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:23:22,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:23:22,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:23:22,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:23:22,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:23:22,177 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:23:22,178 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:23:22,178 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:23:22,179 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:23:22,179 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 00:23:22,180 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 00:23:22,180 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 289 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-03-31 00:23:22,194] [main] java.version = 17.0.2
[testng] 00:23:22,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:23:22,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:23:22,258 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-31_00-23-22.log]
[testng] 00:23:22,260 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-03-31 00:23:22,262] [main] testng.directory = /data
[testng] [2024-03-31 00:23:22,263] [main] testng.configDirectory = /config
[testng] [2024-03-31 00:23:22,273] [main] testng.multiplier = 1.0
[testng] [2024-03-31 00:23:22,274] [main] testng.in-memory = false
[testng] [2024-03-31 00:23:22,274] [main] testng.allow-missing = false
[testng] [2024-03-31 00:23:22,274] [main] user.language = en
[testng] [2024-03-31 00:23:22,274] [main] user.country = ${user.country}
[testng] [2024-03-31 00:23:22,274] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-03-31 00:23:23,233] [main] ----------------------------------------
[testng] [2024-03-31 00:23:23,233] [main] Total files: 21
[testng] [2024-03-31 00:23:23,233] [main] Scan time: 0.959 s (45 ms/file)
[testng] [2024-03-31 00:23:23,233] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-03-31 00:23:24,986] [pool-1-thread-1] Initializing /data/steffen/Batman_008.tif:
[testng] 00:23:24,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:23:24,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:23:24,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-31_00-23-24.log]
[testng] 00:23:24,990 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1438a73e - End of configuration.
[testng] [2024-03-31 00:23:25,064] [pool-1-thread-12] Initializing /data/venu/VENU03.IMG:
[testng] 00:23:25,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:23:25,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:23:25,066 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-31_00-23-25.log]
[testng] 00:23:25,067 |-INFO in ch.qos.logback.core.sift.SiftProcessor@413bf3c0 - End of configuration.
[testng] [2024-03-31 00:23:25,091] [pool-1-thread-11] Initializing /data/venu/VENU_Six.TIF:
[testng] 00:23:25,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:23:25,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:23:25,094 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-31_00-23-25.log]
[testng] 00:23:25,095 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ac63304 - End of configuration.
[testng] [2024-03-31 00:23:25,151] [pool-1-thread-10] Initializing /data/qa-4264/08.51.17 CCD Acquire-Acquire CCD Image Display-Acquire CCD -0.tif:
[testng] 00:23:25,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:23:25,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:23:25,154 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-31_00-23-25.log]
[testng] 00:23:25,154 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70a560c1 - End of configuration.
[testng] [2024-03-31 00:23:25,264] [pool-1-thread-9] Initializing /data/venu/VENU_Seven.TIF:
[testng] 00:23:25,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:23:25,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:23:25,266 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-31_00-23-25.log]
[testng] 00:23:25,266 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29b20140 - End of configuration.
[testng] [2024-03-31 00:23:25,302] [pool-1-thread-8] Initializing /data/venu/VENU_Eight.TIF:
[testng] 00:23:25,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:23:25,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:23:25,310 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-31_00-23-25.log]
[testng] 00:23:25,310 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6741304 - End of configuration.
[testng] [2024-03-31 00:23:25,339] [pool-1-thread-7] Initializing /data/venu/VENU02.IMG:
[testng] 00:23:25,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:23:25,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:23:25,343 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-31_00-23-25.log]
[testng] 00:23:25,343 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61404ec7 - End of configuration.
[testng] [2024-03-31 00:23:25,364] [pool-1-thread-6] Initializing /data/peter/ZC_PTCS_ED_1000x_002.tif:
[testng] 00:23:25,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:23:25,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:23:25,365 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-31_00-23-25.log]
[testng] 00:23:25,366 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d5cae4d - End of configuration.
[testng] [2024-03-31 00:23:25,431] [pool-1-thread-5] Initializing /data/qa-10514/TITAN_FEI_TIFF_Test_Image.tif:
[testng] 00:23:25,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:23:25,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:23:25,433 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-31_00-23-25.log]
[testng] 00:23:25,434 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42ad2870 - End of configuration.
[testng] [2024-03-31 00:23:25,473] [pool-1-thread-4] Initializing /data/venu/VENU_Five.TIF:
[testng] 00:23:25,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:23:25,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:23:25,474 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-31_00-23-25.log]
[testng] 00:23:25,474 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d757fbb - End of configuration.
[testng] [2024-03-31 00:23:25,501] [pool-1-thread-3] Initializing /data/venu/VENU02.TIF:
[testng] 00:23:25,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:23:25,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:23:25,502 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-31_00-23-25.log]
[testng] 00:23:25,503 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39d10510 - End of configuration.
[testng] [2024-03-31 00:23:25,555] [pool-1-thread-2] Initializing /data/qa-11061/Tile_020-009-000_0.tif:
[testng] 00:23:25,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:23:25,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:23:25,556 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-31_00-23-25.log]
[testng] 00:23:25,556 |-INFO in ch.qos.logback.core.sift.SiftProcessor@508f6e7e - End of configuration.
[testng] [2024-03-31 00:23:27,886] [pool-1-thread-5] Initializing /data/antoine/Tile_001-002-000_0-000.tif:
[testng] [2024-03-31 00:23:27,939] [pool-1-thread-8] Initializing /data/venu/VENU.TIF:
[testng] [2024-03-31 00:23:27,966] [pool-1-thread-7] Initializing /data/venu/VENU03.TIF:
[testng] [2024-03-31 00:23:28,005] [pool-1-thread-6] Initializing /data/venu/VENU01.TIF:
[testng] [2024-03-31 00:23:28,050] [pool-1-thread-12] Initializing /data/venu/VENU_Four.TIF:
[testng] [2024-03-31 00:23:28,075] [pool-1-thread-3] Initializing /data/venu/VENU01.IMG:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 11 seconds
Finished: SUCCESS