Started by upstream project "BIOFORMATS-test-repo" build number 2
originally caused by:
 Started by upstream project "Trigger" build number 3
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins4141222935800464991.sh
+ '[' afi = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_215_merge_ci -v /uod/idr/repos/curated/afi:/data -v /uod/idr-scratch/merge-ci/curated/afi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 01:05:26,357 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:05:26,359 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
   [testng] 01:05:26,359 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:05:26,360 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:05:26,360 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:05:26,360 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:05:26,361 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:05:26,361 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:05:26,361 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:05:26,362 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:05:26,362 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:05:26,362 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:05:26,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:05:26,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:05:26,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:05:26,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:05:26,648 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:05:26,648 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:05:26,648 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:05:26,649 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:05:26,649 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
   [testng] 01:05:26,650 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
   [testng] 01:05:26,650 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 289 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-03-15 01:05:26,661] [main] java.version = 1.8.0_342
   [testng] 01:05:26,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:05:26,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:05:26,715 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-15_01-05-26.log]
   [testng] 01:05:26,717 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
   [testng] [2024-03-15 01:05:26,719] [main] testng.directory = /data
   [testng] [2024-03-15 01:05:26,719] [main] testng.configDirectory = /config
   [testng] [2024-03-15 01:05:26,736] [main] testng.multiplier = 1.0
   [testng] [2024-03-15 01:05:26,737] [main] testng.in-memory = false
   [testng] [2024-03-15 01:05:26,737] [main] testng.allow-missing = false
   [testng] [2024-03-15 01:05:26,738] [main] user.language = en
   [testng] [2024-03-15 01:05:26,738] [main] user.country = ${user.country}
   [testng] [2024-03-15 01:05:26,738] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-03-15 01:05:27,475] [main] ----------------------------------------
   [testng] [2024-03-15 01:05:27,475] [main] Total files: 16
   [testng] [2024-03-15 01:05:27,475] [main] Scan time: 0.737 s (46 ms/file)
   [testng] [2024-03-15 01:05:27,475] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-03-15 01:05:38,734] [pool-1-thread-1] Initializing /data/samples/5400.afi: 
   [testng] 01:05:38,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:05:38,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:05:38,736 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-15_01-05-38.log]
   [testng] 01:05:38,737 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10d11691 - End of configuration.
   [testng] [2024-03-15 01:05:38,899] [pool-1-thread-12] Initializing /data/samples/5351.afi: 
   [testng] 01:05:38,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:05:38,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:05:38,902 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-15_01-05-38.log]
   [testng] 01:05:38,903 |-INFO in ch.qos.logback.core.sift.SiftProcessor@859a191 - End of configuration.
   [testng] [2024-03-15 01:05:39,202] [pool-1-thread-10] Initializing /data/samples/5383.afi: 
   [testng] 01:05:39,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:05:39,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:05:39,211 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-15_01-05-39.log]
   [testng] 01:05:39,212 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60aae7d3 - End of configuration.
   [testng] [2024-03-15 01:05:39,547] [pool-1-thread-11] Initializing /data/samples/5306.afi: 
   [testng] 01:05:39,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:05:39,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:05:39,549 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-15_01-05-39.log]
   [testng] 01:05:39,549 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42090c15 - End of configuration.
   [testng] [2024-03-15 01:05:39,854] [pool-1-thread-9] Initializing /data/samples/5365.afi: 
   [testng] 01:05:39,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:05:39,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:05:39,866 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-15_01-05-39.log]
   [testng] 01:05:39,869 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e01fb27 - End of configuration.
   [testng] [2024-03-15 01:05:40,162] [pool-1-thread-8] Initializing /data/samples/5440.afi: 
   [testng] 01:05:40,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:05:40,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:05:40,163 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-15_01-05-40.log]
   [testng] 01:05:40,164 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b9a3d3c - End of configuration.
   [testng] [2024-03-15 01:05:40,305] [pool-1-thread-7] Initializing /data/samples/5446.afi: 
   [testng] 01:05:40,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:05:40,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:05:40,306 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-15_01-05-40.log]
   [testng] 01:05:40,306 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37a80c41 - End of configuration.
   [testng] [2024-03-15 01:05:40,457] [pool-1-thread-6] Initializing /data/samples/5339.afi: 
   [testng] 01:05:40,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:05:40,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:05:40,458 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-15_01-05-40.log]
   [testng] 01:05:40,459 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ee86dd8 - End of configuration.
   [testng] [2024-03-15 01:05:40,714] [pool-1-thread-5] Initializing /data/samples/5387.afi: 
   [testng] 01:05:40,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:05:40,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:05:40,716 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-15_01-05-40.log]
   [testng] 01:05:40,737 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b20e9ec - End of configuration.
   [testng] [2024-03-15 01:05:41,116] [pool-1-thread-4] Initializing /data/samples/5407.afi: 
   [testng] 01:05:41,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:05:41,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:05:41,117 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-15_01-05-41.log]
   [testng] 01:05:41,117 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ecbe74d - End of configuration.
   [testng] [2024-03-15 01:05:41,454] [pool-1-thread-3] Initializing /data/samples/5347.afi: 
   [testng] 01:05:41,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:05:41,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:05:41,456 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-15_01-05-41.log]
   [testng] 01:05:41,457 |-INFO in ch.qos.logback.core.sift.SiftProcessor@229eb031 - End of configuration.
   [testng] [2024-03-15 01:05:41,666] [pool-1-thread-2] Initializing /data/samples/5358.afi: 
   [testng] 01:05:41,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:05:41,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:05:41,667 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-15_01-05-41.log]
   [testng] 01:05:41,668 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53b93950 - End of configuration.
   [testng] [2024-03-15 01:06:23,800] [pool-1-thread-2] Initializing /data/samples/5414.afi: 
   [testng] [2024-03-15 01:06:27,062] [pool-1-thread-1] Initializing /data/samples/5343.afi: 
   [testng] [2024-03-15 01:06:28,966] [pool-1-thread-8] Initializing /data/samples/5371.afi: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 795, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 1 minute 42 seconds
Finished: SUCCESS