Started by upstream project "BIOFORMATS-test-repo" build number 18
originally caused by:
Started by upstream project "Trigger" build number 21
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins11556374597236875723.sh
+ '[' ivision = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_2259_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:48:27,900 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:48:27,901 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 02:48:27,901 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:48:27,902 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:48:27,902 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:48:27,903 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:48:27,903 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:48:27,903 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:48:27,903 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:48:27,904 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:48:27,904 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:48:27,905 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:48:28,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:48:28,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:48:28,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:48:28,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:48:28,109 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:48:28,109 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:48:28,109 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:48:28,110 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:48:28,110 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 02:48:28,111 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 02:48:28,111 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 208 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-03-31 02:48:28,120] [main] java.version = 17.0.2
[testng] 02:48:28,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:48:28,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:48:28,167 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-31_02-48-28.log]
[testng] 02:48:28,171 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-03-31 02:48:28,174] [main] testng.directory = /data
[testng] [2024-03-31 02:48:28,175] [main] testng.configDirectory = /config
[testng] [2024-03-31 02:48:28,185] [main] testng.multiplier = 1.0
[testng] [2024-03-31 02:48:28,186] [main] testng.in-memory = false
[testng] [2024-03-31 02:48:28,186] [main] testng.allow-missing = false
[testng] [2024-03-31 02:48:28,186] [main] user.language = en
[testng] [2024-03-31 02:48:28,186] [main] user.country = ${user.country}
[testng] [2024-03-31 02:48:28,186] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-03-31 02:48:29,290] [main] ----------------------------------------
[testng] [2024-03-31 02:48:29,290] [main] Total files: 17
[testng] [2024-03-31 02:48:29,291] [main] Scan time: 1.104 s (64 ms/file)
[testng] [2024-03-31 02:48:29,291] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 17 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-03-31 02:48:30,284] [pool-1-thread-1] Initializing /data/jcb/200810162/mut BA no bio.ipm:
[testng] 02:48:30,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:48:30,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:48:30,287 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-31_02-48-30.log]
[testng] 02:48:30,288 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e3fc252 - End of configuration.
[testng] [2024-03-31 02:48:30,334] [pool-1-thread-12] Initializing /data/nigel/CD48_75_24hrColor.ipm:
[testng] 02:48:30,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:48:30,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:48:30,335 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-31_02-48-30.log]
[testng] 02:48:30,336 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e8f3ffa - End of configuration.
[testng] [2024-03-31 02:48:30,351] [pool-1-thread-11] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm:
[testng] 02:48:30,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:48:30,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:48:30,352 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-31_02-48-30.log]
[testng] 02:48:30,352 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4538790 - End of configuration.
[testng] [2024-03-31 02:48:30,383] [pool-1-thread-10] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center:
[testng] 02:48:30,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:48:30,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:48:30,384 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-31_02-48-30.log]
[testng] 02:48:30,385 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e04d979 - End of configuration.
[testng] [2024-03-31 02:48:30,406] [pool-1-thread-9] Initializing /data/jcb/200810162/mutBA plus bio.ipm:
[testng] 02:48:30,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:48:30,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:48:30,408 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-31_02-48-30.log]
[testng] 02:48:30,408 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6368028c - End of configuration.
[testng] [2024-03-31 02:48:30,425] [pool-1-thread-8] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm:
[testng] 02:48:30,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:48:30,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:48:30,426 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-31_02-48-30.log]
[testng] 02:48:30,426 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d6ed489 - End of configuration.
[testng] [2024-03-31 02:48:30,448] [pool-1-thread-7] Initializing /data/samples/48bit 150x100x3.ipm:
[testng] 02:48:30,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:48:30,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:48:30,449 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-31_02-48-30.log]
[testng] 02:48:30,450 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e8f5268 - End of configuration.
[testng] [2024-03-31 02:48:30,460] [pool-1-thread-6] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm:
[testng] 02:48:30,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:48:30,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:48:30,467 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-31_02-48-30.log]
[testng] 02:48:30,467 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3881e622 - End of configuration.
[testng] [2024-03-31 02:48:30,514] [pool-1-thread-5] Initializing /data/samples/24bit 300x200x3.ipm:
[testng] 02:48:30,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:48:30,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:48:30,515 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-31_02-48-30.log]
[testng] 02:48:30,515 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c69989 - End of configuration.
[testng] [2024-03-31 02:48:30,539] [pool-1-thread-4] Initializing /data/samples/16-bit 320x256x3.ipm:
[testng] 02:48:30,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:48:30,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:48:30,541 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-31_02-48-30.log]
[testng] 02:48:30,541 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58e7f541 - End of configuration.
[testng] [2024-03-31 02:48:30,557] [pool-1-thread-3] Initializing /data/samples/16bit 320x256x1.ipm:
[testng] 02:48:30,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:48:30,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:48:30,558 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-31_02-48-30.log]
[testng] 02:48:30,559 |-INFO in ch.qos.logback.core.sift.SiftProcessor@582d82af - End of configuration.
[testng] [2024-03-31 02:48:30,569] [pool-1-thread-2] Initializing /data/samples/08Bit 320x256x1.ipm:
[testng] 02:48:30,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:48:30,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:48:30,570 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-31_02-48-30.log]
[testng] 02:48:30,571 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59c74594 - End of configuration.
[testng] [2024-03-31 02:48:32,035] [pool-1-thread-7] Initializing /data/christopher/Color48 Copy.ipm:
[testng] [2024-03-31 02:48:32,121] [pool-1-thread-4] Initializing /data/samples/08Bit 320x256xthree.ipm:
[testng] [2024-03-31 02:48:32,128] [pool-1-thread-3] Initializing /data/jcb/200810162/wt BA plus bio.ipm:
[testng] [2024-03-31 02:48:32,143] [pool-1-thread-5] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm:
[testng] [2024-03-31 02:48:32,153] [pool-1-thread-12] Initializing /data/jcb/200810162/wt ba no bio.ipm:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 901, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 8 seconds
Finished: SUCCESS