Started by upstream project "BIOFORMATS-test-repo" build number 19
originally caused by:
Started by upstream project "Trigger" build number 22
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins671627871281407867.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_2279_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:21:35,947 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:21:35,950 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 01:21:35,950 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:21:35,951 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:21:35,952 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:21:35,952 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:21:35,952 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:21:35,952 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:21:35,953 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:21:35,954 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:21:35,954 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:21:35,954 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:21:36,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:21:36,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:21:36,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:21:36,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:21:36,322 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:21:36,322 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:21:36,322 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:21:36,323 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:21:36,323 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 01:21:36,325 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 01:21:36,325 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 372 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-01 01:21:36,338] [main] java.version = 1.8.0_342
[testng] 01:21:36,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:21:36,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:36,407 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-01_01-21-36.log]
[testng] 01:21:36,409 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-04-01 01:21:36,411] [main] testng.directory = /data
[testng] [2024-04-01 01:21:36,411] [main] testng.configDirectory = /config
[testng] [2024-04-01 01:21:36,428] [main] testng.multiplier = 1.0
[testng] [2024-04-01 01:21:36,428] [main] testng.in-memory = false
[testng] [2024-04-01 01:21:36,428] [main] testng.allow-missing = false
[testng] [2024-04-01 01:21:36,428] [main] user.language = fr
[testng] [2024-04-01 01:21:36,428] [main] user.country = FR
[testng] [2024-04-01 01:21:36,428] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-04-01 01:21:55,823] [main] ----------------------------------------
[testng] [2024-04-01 01:21:55,824] [main] Total files: 283
[testng] [2024-04-01 01:21:55,824] [main] Scan time: 19.395 s (68 ms/file)
[testng] [2024-04-01 01:21:55,824] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 186 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-01 01:31:05,789] [pool-1-thread-1] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets:
[testng] 01:31:05,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:31:05,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:05,791 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-01_01-31-05.log]
[testng] 01:31:05,792 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7dfaa1c - End of configuration.
[testng] [2024-04-01 01:31:05,816] [pool-1-thread-12] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif:
[testng] 01:31:05,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:31:05,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:05,817 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-01_01-31-05.log]
[testng] 01:31:05,818 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69c1fa54 - End of configuration.
[testng] [2024-04-01 01:31:05,922] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif:
[testng] 01:31:05,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:31:05,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:05,923 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-01_01-31-05.log]
[testng] 01:31:05,924 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6da8886f - End of configuration.
[testng] [2024-04-01 01:31:05,991] [pool-1-thread-10] Initializing /data/qa-17270/stack1.ome.tif:
[testng] 01:31:05,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:31:05,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:05,992 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-01_01-31-05.log]
[testng] 01:31:05,992 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cd85f - End of configuration.
[testng] [2024-04-01 01:31:06,152] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir:
[testng] 01:31:06,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:31:06,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:06,152 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-01_01-31-06.log]
[testng] 01:31:06,153 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ffea2f8 - End of configuration.
[testng] [2024-04-01 01:31:06,246] [pool-1-thread-8] Initializing /data/public/etienne/coupe shg stack_0001.oir:
[testng] 01:31:06,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:31:06,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:06,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-01_01-31-06.log]
[testng] 01:31:06,248 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26b97aa9 - End of configuration.
[testng] [2024-04-01 01:31:06,509] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729_0019.oir:
[testng] 01:31:06,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:31:06,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:06,510 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-01_01-31-06.log]
[testng] 01:31:06,510 |-INFO in ch.qos.logback.core.sift.SiftProcessor@277731ca - End of configuration.
[testng] [2024-04-01 01:31:06,724] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729.oir:
[testng] 01:31:06,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:31:06,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:06,725 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-01_01-31-06.log]
[testng] 01:31:06,726 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e6dc7ed - End of configuration.
[testng] [2024-04-01 01:31:06,974] [pool-1-thread-5] Initializing /data/olympus/spectral_scan_XYL.oir:
[testng] 01:31:06,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:31:06,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:06,975 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-01_01-31-06.log]
[testng] 01:31:06,975 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d9fe607 - End of configuration.
[testng] [2024-04-01 01:31:07,645] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif:
[testng] 01:31:07,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:31:07,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:07,646 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-01_01-31-07.log]
[testng] 01:31:07,646 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d39f68 - End of configuration.
[testng] [2024-04-01 01:31:07,684] [pool-1-thread-3] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif:
[testng] 01:31:07,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:31:07,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:07,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-01_01-31-07.log]
[testng] 01:31:07,685 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a2660d - End of configuration.
[testng] [2024-04-01 01:31:07,746] [pool-1-thread-2] Initializing /data/qa-17270/alexa488.oir:
[testng] 01:31:07,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:31:07,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:07,747 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-01_01-31-07.log]
[testng] 01:31:07,748 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c05871b - End of configuration.
[testng] [2024-04-01 01:31:10,418] [pool-1-thread-10] Initializing /data/olympus/2017-04-20/Clipboard.tif:
[testng] [2024-04-01 01:31:10,500] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif:
[testng] [2024-04-01 01:31:10,588] [pool-1-thread-3] Initializing /data/olympus/Clipboard-XYZt.tif:
[testng] [2024-04-01 01:31:10,664] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2.ome.tif:
[testng] [2024-04-01 01:31:11,152] [pool-1-thread-1] Initializing /data/qa-17270/Clipboard-alexa488.tif:
[testng] [2024-04-01 01:31:11,294] [pool-1-thread-2] Initializing /data/public/etienne/Clipboard-venus stack.tif:
[testng] [2024-04-01 01:31:12,265] [pool-1-thread-10] Initializing /data/qa-17270/image1.oir:
[testng] [2024-04-01 01:31:12,400] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif:
[testng] [2024-04-01 01:31:12,605] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir:
[testng] [2024-04-01 01:31:13,025] [pool-1-thread-3] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir:
[testng] [2024-04-01 01:31:14,128] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif:
[testng] [2024-04-01 01:31:15,289] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif:
[testng] [2024-04-01 01:31:15,357] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif:
[testng] [2024-04-01 01:31:15,617] [pool-1-thread-2] Initializing /data/qa-16871/Clipboard.tif:
[testng] [2024-04-01 01:31:15,698] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif:
[testng] [2024-04-01 01:31:15,851] [pool-1-thread-8] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif:
[testng] [2024-04-01 01:31:15,981] [pool-1-thread-1] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif:
[testng] [2024-04-01 01:31:16,827] [pool-1-thread-10] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir:
[testng] [2024-04-01 01:31:18,093] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif:
[testng] [2024-04-01 01:31:18,178] [pool-1-thread-4] Initializing /data/qa-17270/alexa488.ome.tif:
[testng] [2024-04-01 01:31:18,287] [pool-1-thread-7] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info:
[testng] [2024-04-01 01:31:21,641] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi:
[testng] [2024-04-01 01:31:22,165] [pool-1-thread-8] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir:
[testng] [2024-04-01 01:31:22,649] [pool-1-thread-9] Initializing /data/qa-17335/OSR-Z.oir:
[testng] [2024-04-01 01:31:22,957] [pool-1-thread-11] Initializing /data/qa-17270/stack1.oir:
[testng] [2024-04-01 01:31:25,621] [pool-1-thread-1] Initializing /data/olympus/40X_4CH_XY.oir:
[testng] [2024-04-01 01:31:26,241] [pool-1-thread-12] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info:
[testng] [2024-04-01 01:31:30,921] [pool-1-thread-5] Initializing /data/olympus/Stitched_XYZ.vsi:
[testng] [2024-04-01 01:31:32,979] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif:
[testng] [2024-04-01 01:31:33,435] [pool-1-thread-2] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif:
[testng] [2024-04-01 01:31:33,495] [pool-1-thread-5] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif:
[testng] [2024-04-01 01:31:33,572] [pool-1-thread-4] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir:
[testng] [2024-04-01 01:31:46,800] [pool-1-thread-9] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir:
[testng] [2024-04-01 01:31:47,092] [pool-1-thread-1] Initializing /data/qa-21508/Stitch_A01_G008.oir:
[testng] [2024-04-01 01:31:47,573] [pool-1-thread-2] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif:
[testng] [2024-04-01 01:31:47,832] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir:
[testng] [2024-04-01 01:31:48,561] [pool-1-thread-5] Initializing /data/qa-17331/60x zstack RS.ome.tif:
[testng] [2024-04-01 01:31:48,703] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif:
[testng] [2024-04-01 01:31:49,737] [pool-1-thread-6] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif:
[testng] [2024-04-01 01:31:49,940] [pool-1-thread-2] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets:
[testng] [2024-04-01 01:31:50,155] [pool-1-thread-8] Initializing /data/olympus/calcium sparks_XYt.ome.tif:
[testng] [2024-04-01 01:31:50,371] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif:
[testng] [2024-04-01 01:31:50,421] [pool-1-thread-5] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif:
[testng] [2024-04-01 01:31:51,998] [pool-1-thread-6] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info:
[testng] [2024-04-01 01:31:59,618] [pool-1-thread-2] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif:
[testng] [2024-04-01 01:32:00,235] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif:
[testng] [2024-04-01 01:32:00,960] [pool-1-thread-5] Initializing /data/qa-16881/P10-50 D2_0019.oir:
[testng] [2024-04-01 01:32:02,103] [pool-1-thread-8] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir:
[testng] [2024-04-01 01:32:03,620] [pool-1-thread-10] Initializing /data/olympus/Stitched_XYZ.ome.tif:
[testng] [2024-04-01 01:32:03,887] [pool-1-thread-2] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir:
[testng] [2024-04-01 01:32:04,264] [pool-1-thread-9] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif:
[testng] [2024-04-01 01:32:06,486] [pool-1-thread-9] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif:
[testng] [2024-04-01 01:32:06,804] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif:
[testng] [2024-04-01 01:32:07,636] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir:
[testng] [2024-04-01 01:32:08,783] [pool-1-thread-3] Initializing /data/public/etienne/venus stack.ome.tif:
[testng] [2024-04-01 01:32:08,851] [pool-1-thread-9] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir:
[testng] [2024-04-01 01:32:13,336] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif:
[testng] [2024-04-01 01:32:13,447] [pool-1-thread-2] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif:
[testng] [2024-04-01 01:32:14,259] [pool-1-thread-5] Initializing /data/qa-17331/60x zstack RS.oir:
[testng] [2024-04-01 01:32:15,302] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/Clipboard.tif:
[testng] [2024-04-01 01:32:15,381] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir:
[testng] [2024-04-01 01:32:16,080] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir:
[testng] [2024-04-01 01:32:16,632] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir:
[testng] [2024-04-01 01:32:20,173] [pool-1-thread-3] Initializing /data/qa-17335/1.ome.tif:
[testng] [2024-04-01 01:32:20,328] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir:
[testng] [2024-04-01 01:32:21,423] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif:
[testng] [2024-04-01 01:32:22,365] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir:
[testng] [2024-04-01 01:32:22,644] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif:
[testng] [2024-04-01 01:32:22,784] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir:
[testng] [2024-04-01 01:32:22,946] [pool-1-thread-3] Initializing /data/olympus/40X_4CH_XY.ome.tif:
[testng] [2024-04-01 01:32:23,569] [pool-1-thread-10] Initializing /data/qa-17270/Clipboard-stack1.tif:
[testng] [2024-04-01 01:32:23,613] [pool-1-thread-8] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir:
[testng] [2024-04-01 01:36:02,601] [pool-1-thread-5] Initializing /data/qa-17335/Clipboard-1.tif:
[testng] [2024-04-01 01:36:02,805] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi:
[testng] [2024-04-01 01:36:03,207] [pool-1-thread-10] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif:
[testng] [2024-04-01 01:36:04,015] [pool-1-thread-5] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif:
[testng] [2024-04-01 01:36:04,337] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif:
[testng] [2024-04-01 01:36:04,652] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif:
[testng] [2024-04-01 01:36:05,213] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif:
[testng] [2024-04-01 01:36:05,548] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif:
[testng] [2024-04-01 01:36:05,590] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0006.oir:
[testng] [2024-04-01 01:36:06,561] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2.oir:
[testng] [2024-04-01 01:36:08,114] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/zebra shg.oir:
[testng] [2024-04-01 01:36:21,209] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif:
[testng] [2024-04-01 01:36:22,479] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif:
[testng] [2024-04-01 01:36:23,778] [pool-1-thread-1] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir:
[testng] [2024-04-01 01:36:35,945] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir:
[testng] [2024-04-01 01:36:37,053] [pool-1-thread-11] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif:
[testng] [2024-04-01 01:36:38,197] [pool-1-thread-10] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif:
[testng] [2024-04-01 01:36:38,438] [pool-1-thread-11] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir:
[testng] [2024-04-01 01:36:42,523] [pool-1-thread-9] Initializing /data/olympus/XYZt.vsi:
[testng] [2024-04-01 01:36:43,319] [pool-1-thread-9] Initializing /data/qa-17409/Stitch_A01_G001.oir:
[testng] [2024-04-01 01:36:47,698] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir:
[testng] [2024-04-01 01:36:48,109] [pool-1-thread-2] Initializing /data/olympus/Stitched_XYZ.oir:
[testng] [2024-04-01 01:36:50,713] [pool-1-thread-12] Initializing /data/qa-17270/Clipboard-image1.tif:
[testng] [2024-04-01 01:36:51,132] [pool-1-thread-10] Initializing /data/qa-17293/Clipboard.tif:
[testng] [2024-04-01 01:36:51,904] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif:
[testng] [2024-04-01 01:36:52,270] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif:
[testng] [2024-04-01 01:36:52,940] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif:
[testng] [2024-04-01 01:36:53,215] [pool-1-thread-12] Initializing /data/qa-17922/example_multipart.oir:
[testng] [2024-04-01 01:37:39,163] [pool-1-thread-10] Initializing /data/qa-17335/OSR-Z.ome.tif:
[testng] [2024-04-01 01:37:39,511] [pool-1-thread-3] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir:
[testng] [2024-04-01 01:37:42,345] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi:
[testng] [2024-04-01 01:37:42,633] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif:
[testng] [2024-04-01 01:37:44,030] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir:
[testng] [2024-04-01 01:37:52,566] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif:
[testng] [2024-04-01 01:37:52,711] [pool-1-thread-2] Initializing /data/qa-17293/2-z-t_0001_LSM.oir:
[testng] [2024-04-01 01:37:54,375] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif:
[testng] [2024-04-01 01:37:55,234] [pool-1-thread-3] Initializing /data/qa-17335/Clipboard-OSR-Z.tif:
[testng] [2024-04-01 01:37:55,536] [pool-1-thread-11] Initializing /data/olympus/calcium sparks.jpg:
[testng] [2024-04-01 01:37:56,535] [pool-1-thread-3] Initializing /data/cudmore/20190401__0005.oir:
[testng] [2024-04-01 01:38:17,048] [pool-1-thread-11] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir:
[testng] [2024-04-01 01:38:53,575] [pool-1-thread-2] Initializing /data/qa-17270/image1.ome.tif:
[testng] [2024-04-01 01:38:53,701] [pool-1-thread-5] Initializing /data/public/etienne/amy slice z stack_0001.oir:
[testng] [2024-04-01 01:38:54,670] [pool-1-thread-1] Initializing /data/qa-17919/f10187.oir:
[testng] [2024-04-01 01:39:28,981] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif:
[testng] [2024-04-01 01:39:29,060] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif:
[testng] [2024-04-01 01:39:29,773] [pool-1-thread-10] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info:
[testng] [2024-04-01 01:39:30,215] [pool-1-thread-2] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif:
[testng] [2024-04-01 01:39:30,582] [pool-1-thread-9] Initializing /data/olympus/40X_4CH_XY.vsi:
[testng] [2024-04-01 01:39:30,635] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif:
[testng] [2024-04-01 01:39:31,692] [pool-1-thread-2] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir:
[testng] [2024-04-01 01:39:32,048] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif:
[testng] [2024-04-01 01:39:33,185] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif:
[testng] [2024-04-01 01:39:33,652] [pool-1-thread-9] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir:
[testng] [2024-04-01 01:39:35,663] [pool-1-thread-7] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png:
[testng] [2024-04-01 01:39:35,844] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir:
[testng] [2024-04-01 01:39:36,075] [pool-1-thread-5] Initializing /data/olympus/calcium sparks_XYt.oir:
[testng] [2024-04-01 01:39:42,832] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif:
[testng] [2024-04-01 01:39:43,083] [pool-1-thread-10] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif:
[testng] [2024-04-01 01:39:44,063] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif:
[testng] [2024-04-01 01:39:44,372] [pool-1-thread-10] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir:
[testng] [2024-04-01 01:39:46,044] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir:
[testng] [2024-04-01 01:39:51,027] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif:
[testng] [2024-04-01 01:39:52,204] [pool-1-thread-2] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir:
[testng] [2024-04-01 01:39:55,928] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif:
[testng] [2024-04-01 01:39:56,826] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif:
[testng] [2024-04-01 01:39:57,397] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi:
[testng] [2024-04-01 01:39:57,657] [pool-1-thread-2] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif:
[testng] [2024-04-01 01:39:57,706] [pool-1-thread-9] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif:
[testng] [2024-04-01 01:39:58,858] [pool-1-thread-2] Initializing /data/olympus/XYZt.ome.tif:
[testng] [2024-04-01 01:40:00,165] [pool-1-thread-10] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir:
[testng] [2024-04-01 01:40:00,387] [pool-1-thread-9] Initializing /data/qa-16881/P10D1 20150729_0024.oir:
[testng] [2024-04-01 01:40:03,668] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif:
[testng] [2024-04-01 01:40:05,085] [pool-1-thread-2] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif:
[testng] [2024-04-01 01:40:05,929] [pool-1-thread-10] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif:
[testng] [2024-04-01 01:40:06,399] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729.ome.tif:
[testng] [2024-04-01 01:40:07,061] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif:
[testng] [2024-04-01 01:40:07,781] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif:
[testng] [2024-04-01 01:40:08,325] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir:
[testng] [2024-04-01 01:40:18,858] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir:
[testng] [2024-04-01 01:40:20,011] [pool-1-thread-2] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif:
[testng] [2024-04-01 01:40:20,061] [pool-1-thread-9] Initializing /data/olympus/XYZt.oir:
[testng] [2024-04-01 01:40:35,000] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif:
[testng] [2024-04-01 01:40:36,037] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir:
[testng] [2024-04-01 01:40:36,535] [pool-1-thread-4] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif:
[testng] [2024-04-01 01:40:37,030] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir:
[testng] [2024-04-01 01:40:38,126] [pool-1-thread-4] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir:
[testng] [2024-04-01 01:40:38,710] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir:
[testng] [2024-04-01 01:40:40,254] [pool-1-thread-7] Initializing /data/olympus/spectral_scan_XYL.ome.tif:
[testng] [2024-04-01 01:40:40,331] [pool-1-thread-2] Initializing /data/qa-17335/stimulation_0001_LSM.oir:
[testng] [2024-04-01 01:40:43,696] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif:
[testng] [2024-04-01 01:40:44,122] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif:
[testng] [2024-04-01 01:40:45,476] [pool-1-thread-5] Initializing /data/qa-16871/XY_0003.oir:
[testng] [2024-04-01 01:40:45,575] [pool-1-thread-4] Initializing /data/qa-16871/XY_0003.ome.tif:
[testng] [2024-04-01 01:40:45,632] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir:
[testng] [2024-04-01 01:40:49,412] [pool-1-thread-4] Initializing /data/qa-17409/Clipboard.tif:
[testng] [2024-04-01 01:40:49,461] [pool-1-thread-5] Initializing /data/qa-17917/f10010.oir:
[testng] [2024-04-01 01:42:11,858] [pool-1-thread-4] Initializing /data/qa-17335/1.oir:
[testng] [2024-04-01 01:42:12,627] [pool-1-thread-4] Initializing /data/qa-17331/Clipboard.tif:
[testng] [2024-04-01 01:42:13,993] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif:
[testng] [2024-04-01 01:42:15,374] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif:
[testng] [2024-04-01 01:42:16,400] [pool-1-thread-4] Initializing /data/public/etienne/venus stack.oir:
[testng] [2024-04-01 01:42:27,358] [pool-1-thread-6] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif:
[testng] 02:35:05,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:35:05,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:05,225 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-01_02-35-05.log]
[testng] 02:35:05,226 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e3fa7a7 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 9858, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 73 minutes 34 seconds
Finished: SUCCESS