Started by upstream project "BIOFORMATS-test-repo" build number 19
originally caused by:
Started by upstream project "Trigger" build number 22
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins17950262192363750816.sh
+ '[' ultraview = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_2359_merge_ci -v /uod/idr/repos/curated/ultraview:/data -v /uod/idr-scratch/merge-ci/curated/ultraview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:12:02,463 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:12:02,464 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 02:12:02,464 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:12:02,466 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:12:02,466 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:12:02,466 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:12:02,466 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:12:02,466 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:12:02,467 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:12:02,467 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:12:02,467 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:12:02,467 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:12:02,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:12:02,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:12:02,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:12:02,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:12:02,737 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:12:02,737 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:12:02,737 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:12:02,738 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:12:02,738 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 02:12:02,739 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 02:12:02,739 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 272 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-01 02:12:02,749] [main] java.version = 1.8.0_342
[testng] 02:12:02,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:12:02,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:02,798 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-01_02-12-02.log]
[testng] 02:12:02,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-04-01 02:12:02,802] [main] testng.directory = /data
[testng] [2024-04-01 02:12:02,802] [main] testng.configDirectory = /config
[testng] [2024-04-01 02:12:02,815] [main] testng.multiplier = 1.0
[testng] [2024-04-01 02:12:02,815] [main] testng.in-memory = false
[testng] [2024-04-01 02:12:02,815] [main] testng.allow-missing = false
[testng] [2024-04-01 02:12:02,815] [main] user.language = fr
[testng] [2024-04-01 02:12:02,815] [main] user.country = FR
[testng] [2024-04-01 02:12:02,815] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-04-01 02:12:05,624] [main] ----------------------------------------
[testng] [2024-04-01 02:12:05,624] [main] Total files: 19
[testng] [2024-04-01 02:12:05,625] [main] Scan time: 2.809 s (147 ms/file)
[testng] [2024-04-01 02:12:05,625] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-01 02:12:07,468] [pool-1-thread-1] Initializing /data/kate/GreenRedNoZ3T/GreenRedNoZ5T.htm:
[testng] 02:12:07,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:12:07,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:07,470 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-01_02-12-07.log]
[testng] 02:12:07,470 |-INFO in ch.qos.logback.core.sift.SiftProcessor@192396e7 - End of configuration.
[testng] [2024-04-01 02:12:07,496] [pool-1-thread-12] Initializing /data/chad/UltraViewExamples/DIC_200820080724115245/CHAD200820080724115245.HTM:
[testng] 02:12:07,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:12:07,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:07,498 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-01_02-12-07.log]
[testng] 02:12:07,499 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9d53992 - End of configuration.
[testng] [2024-04-01 02:12:07,518] [pool-1-thread-11] Initializing /data/kate/GreenRedNoZnoT/GreenRedNoZNoT.htm:
[testng] 02:12:07,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:12:07,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:07,519 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-01_02-12-07.log]
[testng] 02:12:07,519 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d3e93a8 - End of configuration.
[testng] [2024-04-01 02:12:07,531] [pool-1-thread-10] Initializing /data/chad/DIC/EZRA200820080626102637.HTM:
[testng] 02:12:07,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:12:07,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:07,532 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-01_02-12-07.log]
[testng] 02:12:07,533 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32061fd7 - End of configuration.
[testng] [2024-04-01 02:12:07,545] [pool-1-thread-9] Initializing /data/chad/UltraViewExamples/Works/CHAD200820080724121453.HTM:
[testng] 02:12:07,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:12:07,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:07,546 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-01_02-12-07.log]
[testng] 02:12:07,547 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ccd970e - End of configuration.
[testng] [2024-04-01 02:12:07,558] [pool-1-thread-8] Initializing /data/chad/DIC_IREN200820080107120042/IREN200820080107120042.HTM:
[testng] 02:12:07,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:12:07,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:07,559 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-01_02-12-07.log]
[testng] 02:12:07,559 |-INFO in ch.qos.logback.core.sift.SiftProcessor@129226d5 - End of configuration.
[testng] [2024-04-01 02:12:07,571] [pool-1-thread-7] Initializing /data/kate/GreenRed6ZnoT/GreenRed5ZNoT.htm:
[testng] 02:12:07,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:12:07,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:07,572 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-01_02-12-07.log]
[testng] 02:12:07,573 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e2600a4 - End of configuration.
[testng] [2024-04-01 02:12:07,586] [pool-1-thread-6] Initializing /data/chad/UltraViewExamples/Bug/CHAD200820080724120123.HTM:
[testng] 02:12:07,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:12:07,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:07,587 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-01_02-12-07.log]
[testng] 02:12:07,588 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11eb0bb7 - End of configuration.
[testng] [2024-04-01 02:12:07,602] [pool-1-thread-5] Initializing /data/kate/Neutrophils#18/Neutrophils#18.htm:
[testng] 02:12:07,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:12:07,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:07,603 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-01_02-12-07.log]
[testng] 02:12:07,604 |-INFO in ch.qos.logback.core.sift.SiftProcessor@583d552a - End of configuration.
[testng] [2024-04-01 02:12:07,620] [pool-1-thread-4] Initializing /data/kate/GreenOnlyNoZnoT/GreenOnlyNoZnoT.htm:
[testng] 02:12:07,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:12:07,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:07,621 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-01_02-12-07.log]
[testng] 02:12:07,621 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1826f650 - End of configuration.
[testng] [2024-04-01 02:12:07,634] [pool-1-thread-3] Initializing /data/chad/UltraViewSamples/series 3/RAJE200820080619090142.HTM:
[testng] 02:12:07,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:12:07,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:07,635 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-01_02-12-07.log]
[testng] 02:12:07,635 |-INFO in ch.qos.logback.core.sift.SiftProcessor@199c625e - End of configuration.
[testng] [2024-04-01 02:12:07,649] [pool-1-thread-2] Initializing /data/helio/2 copy Cnn g-tubGFP 111221#20/2 copy Cnn g-tubGFP 111221#20.htm:
[testng] 02:12:07,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:12:07,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:07,651 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-01_02-12-07.log]
[testng] 02:12:07,651 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51c01755 - End of configuration.
[testng] [2024-04-01 02:12:09,755] [pool-1-thread-4] Initializing /data/todd/movement-1.htm:
[testng] [2024-04-01 02:12:09,771] [pool-1-thread-11] Initializing /data/kate/GreenRed6Z3T/GreenRed5Z5T.htm:
[testng] [2024-04-01 02:12:09,788] [pool-1-thread-12] Initializing /data/chad/20080107130850/IREN200820080107130850.HTM:
[testng] [2024-04-01 02:12:09,802] [pool-1-thread-8] Initializing /data/chad/UltraViewExample/works/CHAD200920090331181355.HTM:
[testng] [2024-04-01 02:12:09,815] [pool-1-thread-10] Initializing /data/chad/UltraViewExample/doesNot/CHAD200920090331181253.HTM:
[testng] [2024-04-01 02:12:09,828] [pool-1-thread-1] Initializing /data/kate/Neutrophils#18/tiffs/Neutrophils#18.htm:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 46 seconds
Finished: SUCCESS