Started by upstream project "BIOFORMATS-test-repo" build number 20
originally caused by:
 Started by upstream project "Trigger" build number 23
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins1071401976903076496.sh
+ '[' nifti = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_2581_merge_ci -v /uod/idr/repos/curated/nifti:/data -v /uod/idr-scratch/merge-ci/curated/nifti:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 02:43:51,794 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 02:43:51,796 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
   [testng] 02:43:51,796 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:43:51,797 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:43:51,797 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 02:43:51,798 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 02:43:51,798 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 02:43:51,798 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:43:51,799 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:43:51,799 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 02:43:51,800 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 02:43:51,800 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 02:43:51,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:43:51,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:43:52,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:43:52,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:43:52,010 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:43:52,010 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:43:52,010 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:43:52,011 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:43:52,011 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
   [testng] 02:43:52,011 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
   [testng] 02:43:52,011 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 212 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-04-02 02:43:52,021] [main] java.version = 11.0.16
   [testng] 02:43:52,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:43:52,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:43:52,068 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-02_02-43-52.log]
   [testng] 02:43:52,070 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
   [testng] [2024-04-02 02:43:52,072] [main] testng.directory = /data
   [testng] [2024-04-02 02:43:52,072] [main] testng.configDirectory = /config
   [testng] [2024-04-02 02:43:52,084] [main] testng.multiplier = 1.0
   [testng] [2024-04-02 02:43:52,086] [main] testng.in-memory = false
   [testng] [2024-04-02 02:43:52,086] [main] testng.allow-missing = false
   [testng] [2024-04-02 02:43:52,086] [main] user.language = en
   [testng] [2024-04-02 02:43:52,086] [main] user.country = ${user.country}
   [testng] [2024-04-02 02:43:52,086] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-04-02 02:43:52,931] [main] ----------------------------------------
   [testng] [2024-04-02 02:43:52,931] [main] Total files: 23
   [testng] [2024-04-02 02:43:52,931] [main] Scan time: 0.845 s (36 ms/file)
   [testng] [2024-04-02 02:43:52,931] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 20 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-04-02 02:43:57,663] [pool-1-thread-1] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_26_conf_91.hdr: 
   [testng] 02:43:57,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:43:57,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:43:57,666 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-02_02-43-57.log]
   [testng] 02:43:57,667 |-INFO in ch.qos.logback.core.sift.SiftProcessor@568f5696 - End of configuration.
   [testng] [2024-04-02 02:43:57,697] [pool-1-thread-12] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_25_conf_94.hdr: 
   [testng] 02:43:57,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:43:57,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:43:57,699 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-02_02-43-57.log]
   [testng] 02:43:57,699 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d938d13 - End of configuration.
   [testng] [2024-04-02 02:43:57,717] [pool-1-thread-11] Initializing /data/qa-17334/volume4d.nii: 
   [testng] 02:43:57,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:43:57,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:43:57,718 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-02_02-43-57.log]
   [testng] 02:43:57,718 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a53f342 - End of configuration.
   [testng] [2024-04-02 02:43:57,741] [pool-1-thread-10] Initializing /data/public/NIH/newsirp_final_XML.nii: 
   [testng] 02:43:57,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:43:57,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:43:57,742 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-02_02-43-57.log]
   [testng] 02:43:57,743 |-INFO in ch.qos.logback.core.sift.SiftProcessor@145d8751 - End of configuration.
   [testng] [2024-04-02 02:43:57,770] [pool-1-thread-9] Initializing /data/public/NIH/avg152T1_LR_nifti.nii.gz: 
   [testng] 02:43:57,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:43:57,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:43:57,771 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-02_02-43-57.log]
   [testng] 02:43:57,771 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fe169e2 - End of configuration.
   [testng] [2024-04-02 02:43:57,958] [pool-1-thread-8] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_28_conf_100.hdr: 
   [testng] 02:43:57,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:43:57,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:43:57,959 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-02_02-43-57.log]
   [testng] 02:43:57,959 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d957e1e - End of configuration.
   [testng] [2024-04-02 02:43:57,972] [pool-1-thread-7] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_27_conf_86.hdr: 
   [testng] 02:43:57,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:43:57,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:43:57,973 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-02_02-43-57.log]
   [testng] 02:43:57,973 |-INFO in ch.qos.logback.core.sift.SiftProcessor@188edbbf - End of configuration.
   [testng] [2024-04-02 02:43:57,986] [pool-1-thread-6] Initializing /data/public/NIH/avg152T1_RL_nifti.nii.gz: 
   [testng] 02:43:57,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:43:57,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:43:57,987 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-02_02-43-57.log]
   [testng] 02:43:57,987 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a120c9f - End of configuration.
   [testng] [2024-04-02 02:43:58,163] [pool-1-thread-5] Initializing /data/public/NIH/minimal.hdr: 
   [testng] 02:43:58,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:43:58,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:43:58,163 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-02_02-43-58.log]
   [testng] 02:43:58,164 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40418caf - End of configuration.
   [testng] [2024-04-02 02:43:58,176] [pool-1-thread-4] Initializing /data/public/NIH/avg152T1_RL_nifti.nii: 
   [testng] 02:43:58,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:43:58,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:43:58,176 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-02_02-43-58.log]
   [testng] 02:43:58,177 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49007360 - End of configuration.
   [testng] [2024-04-02 02:43:58,198] [pool-1-thread-3] Initializing /data/public/NIH/avg152T1_LR_nifti.nii: 
   [testng] 02:43:58,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:43:58,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:43:58,200 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-02_02-43-58.log]
   [testng] 02:43:58,201 |-INFO in ch.qos.logback.core.sift.SiftProcessor@132f6115 - End of configuration.
   [testng] [2024-04-02 02:43:58,221] [pool-1-thread-2] Initializing /data/public/NIH/zstat1.nii: 
   [testng] 02:43:58,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:43:58,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:43:58,222 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-02_02-43-58.log]
   [testng] 02:43:58,222 |-INFO in ch.qos.logback.core.sift.SiftProcessor@275a3173 - End of configuration.
   [testng] [2024-04-02 02:43:59,585] [pool-1-thread-3] Initializing /data/public/NIH/avg152T1_LR_nifti.hdr: 
   [testng] [2024-04-02 02:43:59,599] [pool-1-thread-8] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_25_conf_100.hdr: 
   [testng] [2024-04-02 02:43:59,608] [pool-1-thread-5] Initializing /data/public/NIH/minimal.nii: 
   [testng] [2024-04-02 02:43:59,617] [pool-1-thread-1] Initializing /data/public/NIH/avg152T1_RL_nifti.hdr: 
   [testng] [2024-04-02 02:43:59,627] [pool-1-thread-2] Initializing /data/public/NIH/zstat1.nii.gz: 
   [testng] [2024-04-02 02:43:59,687] [pool-1-thread-12] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_28_conf_94.hdr: 
   [testng] [2024-04-02 02:43:59,698] [pool-1-thread-11] Initializing /data/public/NIH/filtered_func_data.nii: 
   [testng] [2024-04-02 02:43:59,721] [pool-1-thread-10] Initializing /data/public/NIH/filtered_func_data.nii.gz: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1060, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 40 seconds
Finished: SUCCESS