Started by upstream project "BIOFORMATS-test-repo" build number 22
originally caused by:
 Started by upstream project "Trigger" build number 25
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins5138298599106990837.sh
+ '[' pcx = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_2597_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
    [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
    [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
    [javac] 4 warnings

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 01:18:54,115 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:18:54,117 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
   [testng] 01:18:54,117 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:18:54,118 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:18:54,118 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:18:54,118 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:18:54,118 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:18:54,119 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:18:54,119 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:18:54,119 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:18:54,120 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:18:54,120 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:18:54,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:18:54,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:18:54,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:18:54,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:18:54,296 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:18:54,296 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:18:54,296 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:18:54,297 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:18:54,297 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
   [testng] 01:18:54,297 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
   [testng] 01:18:54,297 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 178 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-04-04 01:18:54,306] [main] java.version = 21
   [testng] 01:18:54,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:18:54,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:18:54,347 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-04_01-18-54.log]
   [testng] 01:18:54,349 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
   [testng] [2024-04-04 01:18:54,350] [main] testng.directory = /data
   [testng] [2024-04-04 01:18:54,350] [main] testng.configDirectory = /config
   [testng] [2024-04-04 01:18:54,358] [main] testng.multiplier = 1.0
   [testng] [2024-04-04 01:18:54,359] [main] testng.in-memory = false
   [testng] [2024-04-04 01:18:54,359] [main] testng.allow-missing = false
   [testng] [2024-04-04 01:18:54,359] [main] user.language = en
   [testng] [2024-04-04 01:18:54,359] [main] user.country = ${user.country}
   [testng] [2024-04-04 01:18:54,359] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-04-04 01:18:54,801] [main] ----------------------------------------
   [testng] [2024-04-04 01:18:54,801] [main] Total files: 36
   [testng] [2024-04-04 01:18:54,801] [main] Scan time: 0.442 s (12 ms/file)
   [testng] [2024-04-04 01:18:54,801] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 35 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-04-04 01:18:56,062] [pool-1-thread-1] Initializing /data/generated/mri-stack17.pcx: 
   [testng] 01:18:56,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:18:56,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:18:56,064 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-04_01-18-56.log]
   [testng] 01:18:56,064 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6657837e - End of configuration.
   [testng] [2024-04-04 01:18:56,075] [pool-1-thread-12] Initializing /data/generated/mri-stack15.pcx: 
   [testng] 01:18:56,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:18:56,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:18:56,076 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-04_01-18-56.log]
   [testng] 01:18:56,076 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e26149a - End of configuration.
   [testng] [2024-04-04 01:18:56,080] [pool-1-thread-11] Initializing /data/generated/mri-stack18.pcx: 
   [testng] 01:18:56,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:18:56,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:18:56,081 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-04_01-18-56.log]
   [testng] 01:18:56,081 |-INFO in ch.qos.logback.core.sift.SiftProcessor@692740ee - End of configuration.
   [testng] [2024-04-04 01:18:56,086] [pool-1-thread-10] Initializing /data/generated/mri-stack20.pcx: 
   [testng] 01:18:56,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:18:56,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:18:56,087 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-04_01-18-56.log]
   [testng] 01:18:56,087 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fa19d8e - End of configuration.
   [testng] [2024-04-04 01:18:56,095] [pool-1-thread-9] Initializing /data/josh/Screenshots/deltavision.pcx: 
   [testng] 01:18:56,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:18:56,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:18:56,096 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-04_01-18-56.log]
   [testng] 01:18:56,096 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32ee1702 - End of configuration.
   [testng] [2024-04-04 01:18:56,111] [pool-1-thread-8] Initializing /data/generated/mri-stack5.pcx: 
   [testng] 01:18:56,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:18:56,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:18:56,112 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-04_01-18-56.log]
   [testng] 01:18:56,113 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13929620 - End of configuration.
   [testng] [2024-04-04 01:18:56,117] [pool-1-thread-7] Initializing /data/josh/Screenshots/fv1000color.pcx: 
   [testng] 01:18:56,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:18:56,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:18:56,118 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-04_01-18-56.log]
   [testng] 01:18:56,118 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a33754 - End of configuration.
   [testng] [2024-04-04 01:18:56,124] [pool-1-thread-6] Initializing /data/generated/mri-stack13.pcx: 
   [testng] 01:18:56,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:18:56,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:18:56,125 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-04_01-18-56.log]
   [testng] 01:18:56,125 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f4bb610 - End of configuration.
   [testng] [2024-04-04 01:18:56,130] [pool-1-thread-5] Initializing /data/generated/mri-stack7.pcx: 
   [testng] 01:18:56,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:18:56,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:18:56,131 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-04_01-18-56.log]
   [testng] 01:18:56,132 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b2a2f3a - End of configuration.
   [testng] [2024-04-04 01:18:56,137] [pool-1-thread-4] Initializing /data/generated/mri-stack21.pcx: 
   [testng] 01:18:56,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:18:56,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:18:56,137 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-04_01-18-56.log]
   [testng] 01:18:56,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2032d1e9 - End of configuration.
   [testng] [2024-04-04 01:18:56,142] [pool-1-thread-3] Initializing /data/generated/mri-stack12.pcx: 
   [testng] 01:18:56,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:18:56,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:18:56,143 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-04_01-18-56.log]
   [testng] 01:18:56,143 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f823a69 - End of configuration.
   [testng] [2024-04-04 01:18:56,148] [pool-1-thread-2] Initializing /data/generated/mri-stack11.pcx: 
   [testng] 01:18:56,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:18:56,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:18:56,149 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-04_01-18-56.log]
   [testng] 01:18:56,149 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6831edeb - End of configuration.
   [testng] [2024-04-04 01:18:58,717] [pool-1-thread-1] Initializing /data/generated/mri-stack22.pcx: 
   [testng] [2024-04-04 01:18:58,720] [pool-1-thread-10] Initializing /data/generated/mri-stack26.pcx: 
   [testng] [2024-04-04 01:18:58,724] [pool-1-thread-4] Initializing /data/generated/mri-stack3.pcx: 
   [testng] [2024-04-04 01:18:58,728] [pool-1-thread-8] Initializing /data/generated/mri-stack19.pcx: 
   [testng] [2024-04-04 01:18:58,733] [pool-1-thread-12] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: 
   [testng] [2024-04-04 01:18:58,739] [pool-1-thread-11] Initializing /data/generated/mri-stack9.pcx: 
   [testng] [2024-04-04 01:18:58,743] [pool-1-thread-6] Initializing /data/generated/mri-stack25.pcx: 
   [testng] [2024-04-04 01:18:58,749] [pool-1-thread-2] Initializing /data/generated/mri-stack10.pcx: 
   [testng] [2024-04-04 01:18:58,753] [pool-1-thread-5] Initializing /data/josh/Screenshots/nd2 color.pcx: 
   [testng] [2024-04-04 01:18:58,761] [pool-1-thread-3] Initializing /data/generated/mri-stack23.pcx: 
   [testng] [2024-04-04 01:18:58,766] [pool-1-thread-7] Initializing /data/generated/mri-stack14.pcx: 
   [testng] [2024-04-04 01:18:58,770] [pool-1-thread-9] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: 
   [testng] [2024-04-04 01:18:59,057] [pool-1-thread-1] Initializing /data/josh/Screenshots/leica-lif.pcx: 
   [testng] [2024-04-04 01:18:59,063] [pool-1-thread-6] Initializing /data/generated/mri-stack1.pcx: 
   [testng] [2024-04-04 01:18:59,066] [pool-1-thread-2] Initializing /data/generated/mri-stack8.pcx: 
   [testng] [2024-04-04 01:18:59,069] [pool-1-thread-4] Initializing /data/generated/mri-stack2.pcx: 
   [testng] [2024-04-04 01:18:59,072] [pool-1-thread-3] Initializing /data/josh/Screenshots/biorad color off.pcx: 
   [testng] [2024-04-04 01:18:59,105] [pool-1-thread-10] Initializing /data/generated/mri-stack0.pcx: 
   [testng] [2024-04-04 01:18:59,114] [pool-1-thread-11] Initializing /data/josh/Screenshots/epscolor.pcx: 
   [testng] [2024-04-04 01:18:59,119] [pool-1-thread-7] Initializing /data/generated/mri-stack4.pcx: 
   [testng] [2024-04-04 01:18:59,121] [pool-1-thread-8] Initializing /data/generated/mri-stack16.pcx: 
   [testng] [2024-04-04 01:18:59,218] [pool-1-thread-6] Initializing /data/generated/mri-stack24.pcx: 
   [testng] [2024-04-04 01:18:59,236] [pool-1-thread-4] Initializing /data/generated/mri-stack6.pcx: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1855, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 8 seconds
Finished: SUCCESS