Started by upstream project "BIOFORMATS-test-repo" build number 22
originally caused by:
Started by upstream project "Trigger" build number 25
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins6658576879043566130.sh
+ '[' specs = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_2623_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:22:04,549 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:22:04,551 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
[testng] 01:22:04,551 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:22:04,552 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:22:04,553 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:22:04,554 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:22:04,554 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:22:04,554 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:22:04,555 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:22:04,555 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:22:04,556 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:22:04,556 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:22:04,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:22:04,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:22:04,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:22:04,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:22:04,789 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:22:04,790 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:22:04,790 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:22:04,790 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:22:04,790 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
[testng] 01:22:04,791 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
[testng] 01:22:04,791 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 236 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-04 01:22:04,800] [main] java.version = 21
[testng] 01:22:04,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:22:04,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:04,848 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-04_01-22-04.log]
[testng] 01:22:04,849 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
[testng] [2024-04-04 01:22:04,851] [main] testng.directory = /data
[testng] [2024-04-04 01:22:04,851] [main] testng.configDirectory = /config
[testng] [2024-04-04 01:22:04,861] [main] testng.multiplier = 1.0
[testng] [2024-04-04 01:22:04,862] [main] testng.in-memory = false
[testng] [2024-04-04 01:22:04,862] [main] testng.allow-missing = false
[testng] [2024-04-04 01:22:04,862] [main] user.language = en
[testng] [2024-04-04 01:22:04,862] [main] user.country = ${user.country}
[testng] [2024-04-04 01:22:04,862] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-04-04 01:22:18,320] [main] ----------------------------------------
[testng] [2024-04-04 01:22:18,321] [main] Total files: 226
[testng] [2024-04-04 01:22:18,321] [main] Scan time: 13.458 s (59 ms/file)
[testng] [2024-04-04 01:22:18,322] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 28 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-04 01:22:24,089] [pool-1-thread-1] Initializing /data/iplab/Blend_Final.IPL:
[testng] 01:22:24,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:22:24,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:24,092 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-04_01-22-24.log]
[testng] 01:22:24,092 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30650d7 - End of configuration.
[testng] [2024-04-04 01:22:24,114] [pool-1-thread-2] Initializing /data/fluoview/Sample_XYZ.TIF:
[testng] 01:22:24,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:22:24,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:24,116 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-04_01-22-24.log]
[testng] 01:22:24,116 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b70a58b - End of configuration.
[testng] [2024-04-04 01:22:24,190] [pool-1-thread-12] Initializing /data/iplab/Color Image.IPL:
[testng] 01:22:24,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:22:24,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:24,191 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-04_01-22-24.log]
[testng] 01:22:24,192 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37ba8f6a - End of configuration.
[testng] [2024-04-04 01:22:24,200] [pool-1-thread-11] Initializing /data/iplab/Blend_DIC.IPL:
[testng] 01:22:24,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:22:24,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:24,201 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-04_01-22-24.log]
[testng] 01:22:24,201 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21c88b86 - End of configuration.
[testng] [2024-04-04 01:22:24,209] [pool-1-thread-10] Initializing /data/iplab/Actin.IPL:
[testng] 01:22:24,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:22:24,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:24,209 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-04_01-22-24.log]
[testng] 01:22:24,210 |-INFO in ch.qos.logback.core.sift.SiftProcessor@275be4c1 - End of configuration.
[testng] [2024-04-04 01:22:24,214] [pool-1-thread-9] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm:
[testng] 01:22:24,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:22:24,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:24,215 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-04_01-22-24.log]
[testng] 01:22:24,215 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39d07b87 - End of configuration.
[testng] [2024-04-04 01:22:24,298] [pool-1-thread-8] Initializing /data/iplab/Blend_Dapi.IPL:
[testng] 01:22:24,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:22:24,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:24,301 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-04_01-22-24.log]
[testng] 01:22:24,301 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e4dfe4 - End of configuration.
[testng] [2024-04-04 01:22:24,313] [pool-1-thread-7] Initializing /data/fluoview/sample_labled_XYZTCh.tif:
[testng] 01:22:24,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:22:24,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:24,314 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-04_01-22-24.log]
[testng] 01:22:24,314 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22a2e67a - End of configuration.
[testng] [2024-04-04 01:22:24,339] [pool-1-thread-6] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3:
[testng] 01:22:24,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:22:24,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:24,340 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-04_01-22-24.log]
[testng] 01:22:24,341 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d21b2c3 - End of configuration.
[testng] [2024-04-04 01:22:24,356] [pool-1-thread-5] Initializing /data/fluoview/SpineAnimation.tif:
[testng] 01:22:24,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:22:24,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:24,357 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-04_01-22-24.log]
[testng] 01:22:24,357 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35d74b05 - End of configuration.
[testng] [2024-04-04 01:22:24,387] [pool-1-thread-4] Initializing /data/iplab/Blend_Fitc.IPL:
[testng] 01:22:24,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:22:24,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:24,388 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-04_01-22-24.log]
[testng] 01:22:24,390 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f374ea1 - End of configuration.
[testng] [2024-04-04 01:22:24,402] [pool-1-thread-3] Initializing /data/fluoview/sample_labled_XYZCh.tif:
[testng] 01:22:24,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:22:24,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:24,403 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-04_01-22-24.log]
[testng] 01:22:24,404 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d3f9a20 - End of configuration.
[testng] [2024-04-04 01:22:26,299] [pool-1-thread-12] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3:
[testng] [2024-04-04 01:22:26,314] [pool-1-thread-10] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm:
[testng] [2024-04-04 01:22:26,392] [pool-1-thread-6] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3:
[testng] [2024-04-04 01:22:26,403] [pool-1-thread-1] Initializing /data/fluoview/Sample_ThreeCH.TIF:
[testng] [2024-04-04 01:22:26,444] [pool-1-thread-3] Initializing /data/iplab/16Bit XRay.IPL:
[testng] [2024-04-04 01:22:26,449] [pool-1-thread-11] Initializing /data/fluoview/Sample_XYT.TIF:
[testng] [2024-04-04 01:22:26,479] [pool-1-thread-4] Initializing /data/fluoview/Sample_TwoCH.TIF:
[testng] [2024-04-04 01:22:26,517] [pool-1-thread-7] Initializing /data/fluoview/SpineAnimation.avi:
[testng] [2024-04-04 01:22:26,531] [pool-1-thread-8] Initializing /data/iplab/10x Blood and Bacteria.IPL:
[testng] [2024-04-04 01:22:26,540] [pool-1-thread-5] Initializing /data/iplab/3t3 Cell.IPL:
[testng] [2024-04-04 01:22:26,547] [pool-1-thread-2] Initializing /data/fluoview/sample_labled_XYTCh.tif:
[testng] [2024-04-04 01:22:26,810] [pool-1-thread-5] Initializing /data/iplab/Blend_Tritc.IPL:
[testng] [2024-04-04 01:22:26,819] [pool-1-thread-3] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm:
[testng] [2024-04-04 01:22:27,003] [pool-1-thread-6] Initializing /data/iplab/Chromosomes.IPL:
[testng] [2024-04-04 01:22:27,011] [pool-1-thread-12] Initializing /data/fluoview/Sample_XT.tif:
[testng] [2024-04-04 01:22:27,137] [pool-1-thread-8] Initializing /data/iplab/Color Histology.IPL:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1484, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 29 seconds
Finished: SUCCESS