Started by upstream project "BIOFORMATS-test-repo" build number 171 originally caused by: Started by upstream project "Trigger" build number 194 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins14823279959471966029.sh + '[' tiff = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_27046_merge_ci -v /uod/idr/repos/curated/tiff:/data -v /uod/idr-scratch/merge-ci/curated/tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:21:06,781 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:21:06,783 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:21:06,783 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:06,784 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:06,785 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:21:06,785 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:21:06,785 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:21:06,785 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:06,786 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:06,787 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:21:06,787 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:21:06,787 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:21:06,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:21:06,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:21:07,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:21:07,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:21:07,031 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:21:07,032 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:21:07,032 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:21:07,032 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:21:07,032 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:21:07,033 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:21:07,034 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 247 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-03 01:21:07,048] [main] java.version = 11.0.16 [testng] 01:21:07,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:21:07,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:07,130 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-03_01-21-07.log] [testng] 01:21:07,134 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-09-03 01:21:07,138] [main] testng.directory = /data [testng] [2024-09-03 01:21:07,138] [main] testng.configDirectory = /config [testng] [2024-09-03 01:21:07,150] [main] testng.multiplier = 1.0 [testng] [2024-09-03 01:21:07,152] [main] testng.in-memory = false [testng] [2024-09-03 01:21:07,152] [main] testng.allow-missing = false [testng] [2024-09-03 01:21:07,152] [main] user.language = en [testng] [2024-09-03 01:21:07,152] [main] user.country = ${user.country} [testng] [2024-09-03 01:21:07,152] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-03 01:21:14,671] [main] ---------------------------------------- [testng] [2024-09-03 01:21:14,671] [main] Total files: 4426 [testng] [2024-09-03 01:21:14,672] [main] Scan time: 7.519 s (1 ms/file) [testng] [2024-09-03 01:21:14,672] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 722 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-03 01:23:22,439] [pool-1-thread-1] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x32.tiff: [testng] 01:23:22,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:23:22,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,443 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-03_01-23-22.log] [testng] 01:23:22,443 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33d5e15f - End of configuration. [testng] [2024-09-03 01:23:22,475] [pool-1-thread-12] Initializing /data/paulh/quickpollen4_w1_t1.tif: [testng] 01:23:22,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:23:22,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,476 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-03_01-23-22.log] [testng] 01:23:22,476 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fb74b9b - End of configuration. [testng] [2024-09-03 01:23:22,543] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z024.tif: [testng] 01:23:22,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:23:22,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,544 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-03_01-23-22.log] [testng] 01:23:22,544 |-INFO in ch.qos.logback.core.sift.SiftProcessor@453f3046 - End of configuration. [testng] [2024-09-03 01:23:22,570] [pool-1-thread-10] Initializing /data/brian/CurrentSystems.tiff: [testng] 01:23:22,570 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:23:22,570 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,571 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-03_01-23-22.log] [testng] 01:23:22,571 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fa20c79 - End of configuration. [testng] [2024-09-03 01:23:22,598] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0257.TIF: [testng] 01:23:22,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:23:22,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,599 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-03_01-23-22.log] [testng] 01:23:22,599 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ca7e0f9 - End of configuration. [testng] [2024-09-03 01:23:22,666] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z048.tif: [testng] 01:23:22,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:23:22,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,667 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-03_01-23-22.log] [testng] 01:23:22,667 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b2d0909 - End of configuration. [testng] [2024-09-03 01:23:22,687] [pool-1-thread-7] Initializing /data/ascb/FND-22_FawcettLongitudinalMammalian_4800.tif: [testng] 01:23:22,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:23:22,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,688 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-03_01-23-22.log] [testng] 01:23:22,688 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4547444e - End of configuration. [testng] [2024-09-03 01:23:22,766] [pool-1-thread-6] Initializing /data/public/libtiff/quad-tile.tif: [testng] 01:23:22,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:23:22,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,767 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-03_01-23-22.log] [testng] 01:23:22,768 |-INFO in ch.qos.logback.core.sift.SiftProcessor@deb7212 - End of configuration. [testng] [2024-09-03 01:23:22,794] [pool-1-thread-5] Initializing /data/brian/MFGTMP_080902150001t001B02f73d1.TIF: [testng] 01:23:22,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:23:22,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,795 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-03_01-23-22.log] [testng] 01:23:22,795 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f44a58a - End of configuration. [testng] [2024-09-03 01:23:22,856] [pool-1-thread-4] Initializing /data/josiah/cell-Z18.C0.tiff: [testng] 01:23:22,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:23:22,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,857 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-03_01-23-22.log] [testng] 01:23:22,857 |-INFO in ch.qos.logback.core.sift.SiftProcessor@353959d7 - End of configuration. [testng] [2024-09-03 01:23:22,903] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C0_Z036.tif: [testng] 01:23:22,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:23:22,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,904 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-03_01-23-22.log] [testng] 01:23:22,905 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6593568b - End of configuration. [testng] [2024-09-03 01:23:22,944] [pool-1-thread-2] Initializing /data/jay/10-crop-Stack.tif: [testng] 01:23:22,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:23:22,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,946 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-03_01-23-22.log] [testng] 01:23:22,946 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1df245e7 - End of configuration. [testng] [2024-09-03 01:23:25,673] [pool-1-thread-5] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-64x16.tiff: [testng] [2024-09-03 01:23:25,690] [pool-1-thread-1] Initializing /data/public/condensation/E4.pattern9.tif: [testng] [2024-09-03 01:23:25,739] [pool-1-thread-8] Initializing /data/josiah/cell-Z21.C0.tiff: [testng] [2024-09-03 01:23:25,768] [pool-1-thread-11] Initializing /data/samples/melissa/strike-uncompressed.tiff: [testng] [2024-09-03 01:23:25,791] [pool-1-thread-6] Initializing /data/josiah/cell-Z17.C1.tiff: [testng] [2024-09-03 01:23:25,817] [pool-1-thread-3] Initializing /data/big-images/8kx8k.tif: [testng] [2024-09-03 01:23:25,948] [pool-1-thread-4] Initializing /data/julien/AVECCHRO.TIF: [testng] [2024-09-03 01:23:26,053] [pool-1-thread-10] Initializing /data/kevino/_BF_00002.tif: [testng] [2024-09-03 01:23:26,099] [pool-1-thread-12] Initializing /data/josiah/cell-Z11.C0.tiff: [testng] [2024-09-03 01:23:26,130] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z042.tif: [testng] [2024-09-03 01:23:26,149] [pool-1-thread-9] Initializing /data/josiah/cell-Z7.C1.tiff: [testng] [2024-09-03 01:23:26,886] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z043.tif: [testng] [2024-09-03 01:23:26,968] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C1_Z009.tif: [testng] [2024-09-03 01:23:27,007] [pool-1-thread-2] Initializing /data/koen/nt3_cortex_rots_thresh45.tif: [testng] [2024-09-03 01:23:27,073] [pool-1-thread-11] Initializing /data/josiah/cell-Z37.C0.tiff: [testng] [2024-09-03 01:23:27,100] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x32.tiff: [testng] [2024-09-03 01:23:27,118] [pool-1-thread-6] Initializing /data/public/libtiff/quad-jpeg.tif: [testng] [2024-09-03 01:23:27,170] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z050.tif: [testng] [2024-09-03 01:23:27,191] [pool-1-thread-1] Initializing /data/josh/jnb1s1_raw0214.TIF: [testng] [2024-09-03 01:23:27,236] [pool-1-thread-4] Initializing /data/josh/jnb1s1_raw0234.TIF: [testng] [2024-09-03 01:23:27,457] [pool-1-thread-10] Initializing /data/brian/PlantCell/PlantCell_C0_Z019.tif: [testng] [2024-09-03 01:23:27,694] [pool-1-thread-5] Initializing /data/wayne/screen-rgb.tiff: [testng] [2024-09-03 01:23:27,780] [pool-1-thread-9] Initializing /data/wayne/MyoblastCells-8bit.tiff: [testng] [2024-09-03 01:23:27,920] [pool-1-thread-8] Initializing /data/imagesc-82872/WT_Uninfected_top_right.tiff: [testng] [2024-09-03 01:23:28,346] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z057.tif: [testng] [2024-09-03 01:23:28,401] [pool-1-thread-2] Initializing /data/public/libtiff/jello.tif: [testng] [2024-09-03 01:23:28,428] [pool-1-thread-6] Initializing /data/ascb/CYT-93_PasolliMouse1c_4800.tif: [testng] [2024-09-03 01:23:28,478] [pool-1-thread-12] Initializing /data/tom-kazimiers/test_exiftool2.tiff: [testng] [2024-09-03 01:23:28,727] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C0_Z033.tif: [testng] [2024-09-03 01:23:28,761] [pool-1-thread-4] Initializing /data/brian/retina/retina_C0_Z007.tif: [testng] [2024-09-03 01:23:28,809] [pool-1-thread-10] Initializing /data/harvey/NR_Giemsa_Sag_CTb_Retina_02.tif: [testng] [2024-09-03 01:23:29,440] [pool-1-thread-2] Initializing /data/josiah/cell-Z7.C0.tiff: [testng] [2024-09-03 01:23:29,487] [pool-1-thread-11] Initializing /data/public/condensation/B12.pattern4.tif: [testng] [2024-09-03 01:23:29,600] [pool-1-thread-5] Initializing /data/victoria/scan4_1hr_20X_.352g_n180p_2z_0.387644res_9int_C2_TP1.tiff: [testng] [2024-09-03 01:23:29,749] [pool-1-thread-12] Initializing /data/lzw/BoutonVsAxon.tif: [testng] [2024-09-03 01:23:29,844] [pool-1-thread-9] Initializing /data/tom/TLD - n000000_Stamp.tif: [testng] [2024-09-03 01:23:30,130] [pool-1-thread-4] Initializing /data/brian/retina/retina_C0_Z009.tif: [testng] [2024-09-03 01:23:30,300] [pool-1-thread-7] Initializing /data/josiah/cell-Z24.C1.tiff: [testng] [2024-09-03 01:23:30,339] [pool-1-thread-1] Initializing /data/ascb/CYT-91_PasolliMouse1a_4800.tif: [testng] [2024-09-03 01:23:30,930] [pool-1-thread-2] Initializing /data/ascb/FND-12_PorterFranziniSarcoplasmic_4800.tif: [testng] [2024-09-03 01:23:30,970] [pool-1-thread-4] Initializing /data/josiah/cell-Z2.C1.tiff: [testng] [2024-09-03 01:23:31,064] [pool-1-thread-11] Initializing /data/josh/stack.tif: [testng] [2024-09-03 01:23:31,334] [pool-1-thread-7] Initializing /data/ascb/CYT-55_HowellGolgiRibbonOutlined_4800.tif: [testng] [2024-09-03 01:23:31,412] [pool-1-thread-5] Initializing /data/darwinjob/SESSION4_Image2.tif: [testng] [2024-09-03 01:23:31,662] [pool-1-thread-9] Initializing /data/public/condensation/C4.pattern7.tif: [testng] [2024-09-03 01:23:31,959] [pool-1-thread-4] Initializing /data/qa-4017/Artificial_xyt_8bit.tif: [testng] [2024-09-03 01:23:32,345] [pool-1-thread-10] Initializing 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[testng] [2024-09-03 01:24:37,622] [pool-1-thread-8] Initializing /data/curtis/map/the-quick: [testng] [2024-09-03 01:24:37,712] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0247.TIF: [testng] [2024-09-03 01:24:37,844] [pool-1-thread-12] Initializing /data/lzw/test.tif: [testng] [2024-09-03 01:24:38,003] [pool-1-thread-3] Initializing /data/josiah/cell-Z36.C1.tiff: [testng] [2024-09-03 01:24:38,111] [pool-1-thread-8] Initializing /data/tobias/test002_1.tif: [testng] [2024-09-03 01:24:38,247] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z008.tif: [testng] [2024-09-03 01:24:38,432] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z017.tif: [testng] [2024-09-03 01:24:38,453] [pool-1-thread-3] Initializing /data/josh/3D Projections of stack.tif: [testng] [2024-09-03 01:24:38,553] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z018.tif: [testng] [2024-09-03 01:24:38,732] [pool-1-thread-9] Initializing /data/david/200umbeads_stack_1fs.tif: [testng] [2024-09-03 01:24:38,872] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z022.tif: [testng] [2024-09-03 01:24:38,998] [pool-1-thread-4] Initializing /data/ascb/FND-15_PorterFast_4800.tif: [testng] [2024-09-03 01:24:40,920] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C0_Z006.tif: [testng] [2024-09-03 01:24:41,027] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0203.TIF: [testng] [2024-09-03 01:24:41,251] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z005.tif: [testng] [2024-09-03 01:24:41,271] [pool-1-thread-3] Initializing /data/jayne/Zst_13/WTERZ2_Series13_z000_ch00.tif: [testng] [2024-09-03 01:24:41,552] [pool-1-thread-5] Initializing /data/josh/jnb1s1_raw0224.TIF: [testng] [2024-09-03 01:24:41,747] [pool-1-thread-9] Initializing /data/josiah/cell-Z1.C1.tiff: [testng] [2024-09-03 01:24:41,913] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z016.tif: [testng] [2024-09-03 01:24:42,303] [pool-1-thread-8] Initializing /data/christine/Image5D_4color test stack/RGB from I5D.tif: [testng] [2024-09-03 01:24:42,429] [pool-1-thread-12] Initializing /data/ascb/FND-11_PorterPaladeEarly_4800.tif: [testng] [2024-09-03 01:24:42,499] [pool-1-thread-9] Initializing /data/wayne/mBoeglin_lzw/mm7.1.2.0_07.tif: [testng] [2024-09-03 01:24:42,804] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C1_Z022.tif: [testng] [2024-09-03 01:24:43,362] [pool-1-thread-5] Initializing /data/jeff/erdas_spnad83.tif: [testng] [2024-09-03 01:24:43,411] [pool-1-thread-8] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs007.TIF: [testng] [2024-09-03 01:24:43,579] [pool-1-thread-9] Initializing /data/pavel/Dmel/full.pattern: [testng] [2024-09-03 01:24:44,854] [pool-1-thread-5] Initializing /data/brian/Ch1_fld1.tif: [testng] [2024-09-03 01:24:45,964] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z024.tif: [testng] [2024-09-03 01:24:45,995] [pool-1-thread-8] Initializing 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[testng] [2024-09-03 01:25:18,501] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C1_Z017.tif: [testng] [2024-09-03 01:25:18,582] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z021.tif: [testng] [2024-09-03 01:25:19,200] [pool-1-thread-3] Initializing /data/josh/jnb1s1_raw0207.TIF: [testng] [2024-09-03 01:25:19,378] [pool-1-thread-4] Initializing /data/julien/EmmanuelVignalchewingfraise.TIF: [testng] [2024-09-03 01:25:19,418] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0237.TIF: [testng] [2024-09-03 01:25:19,935] [pool-1-thread-12] Initializing /data/ascb/FND-24_GeorgeEPalade.tif: [testng] [2024-09-03 01:25:19,987] [pool-1-thread-4] Initializing /data/misc/mri-new.mov: [testng] [2024-09-03 01:25:20,132] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z056.tif: [testng] [2024-09-03 01:25:20,195] [pool-1-thread-4] Initializing /data/public/libtiff/ycbcr-cat.tif: [testng] [2024-09-03 01:25:20,224] [pool-1-thread-10] Initializing 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Initializing /data/tamjid/Image_843.tif: [testng] [2024-09-03 01:25:22,020] [pool-1-thread-8] Initializing /data/josiah/cell-Z31.C0.tiff: [testng] [2024-09-03 01:25:22,154] [pool-1-thread-12] Initializing /data/josiah/cell-Z3.C0.tiff: [testng] [2024-09-03 01:25:22,330] [pool-1-thread-4] Initializing /data/kelsey/Live-Dead Assay 4000 nm pitch PU.TIF: [testng] [2024-09-03 01:25:22,491] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z060.tif: [testng] [2024-09-03 01:25:22,634] [pool-1-thread-12] Initializing /data/josh/NESb_C2_TP5.tiff: [testng] [2024-09-03 01:25:22,938] [pool-1-thread-8] Initializing /data/josiah/cell-Z30.C0.tiff: [testng] [2024-09-03 01:25:23,324] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z059.tif: [testng] [2024-09-03 01:25:23,477] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z063.tif: [testng] [2024-09-03 01:25:23,498] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C1_Z033.tif: [testng] [2024-09-03 01:25:23,662] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z034.tif: [testng] [2024-09-03 01:25:23,692] [pool-1-thread-12] Initializing /data/carolyn/tumor_3.tif: [testng] [2024-09-03 01:25:23,862] [pool-1-thread-8] Initializing /data/misc/mri.avi: [testng] [2024-09-03 01:25:23,967] [pool-1-thread-4] Initializing /data/josh/jnb1s1_raw0229.TIF: [testng] [2024-09-03 01:25:24,099] [pool-1-thread-5] Initializing /data/kevino/_BF_00005.tif: [testng] [2024-09-03 01:25:24,218] [pool-1-thread-8] Initializing /data/public/libtiff/dscf0013.tif: [testng] [2024-09-03 01:25:24,449] [pool-1-thread-12] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs011.TIF: [testng] [2024-09-03 01:25:24,847] [pool-1-thread-5] Initializing /data/ascb/CYT-149_Fader_Fusion.tif: [testng] [2024-09-03 01:25:24,942] [pool-1-thread-4] Initializing /data/josh/jnb1s1_raw0225.TIF: [testng] [2024-09-03 01:25:25,058] [pool-1-thread-8] Initializing /data/tom-kazimiers/crop_two_chan.tiff: [testng] [2024-09-03 01:25:25,281] [pool-1-thread-11] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-32x48.tiff: [testng] [2024-09-03 01:25:25,443] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0218.TIF: [testng] [2024-09-03 01:25:25,594] [pool-1-thread-11] Initializing /data/josiah/cell-Z33.C0.tiff: [testng] [2024-09-03 01:25:25,871] [pool-1-thread-4] Initializing /data/samples/cielab/Ski_TC8-03_ROMM_lab.tif: [testng] [2024-09-03 01:25:25,972] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C1_Z000.tif: [testng] [2024-09-03 01:25:26,108] [pool-1-thread-11] Initializing /data/ascb/bad/FND-21_FawcettPhillipsTransverse_4800.tif: [testng] [2024-09-03 01:25:26,272] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C1_Z020.tif: [testng] [2024-09-03 01:25:26,357] [pool-1-thread-12] Initializing /data/damian/24m.tiff: [testng] [2024-09-03 01:25:26,652] [pool-1-thread-8] Initializing /data/jae/Rat_Hippocampal_Neuron.tif: [testng] [2024-09-03 01:25:26,817] [pool-1-thread-12] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-16x48.tiff: [testng] [2024-09-03 01:25:27,060] [pool-1-thread-12] Initializing /data/josiah/cell-Z25.C0.tiff: [testng] [2024-09-03 01:25:27,151] [pool-1-thread-8] Initializing /data/public/condensation/A1.pattern2.tif: [testng] [2024-09-03 01:25:27,552] [pool-1-thread-12] Initializing /data/paulh/quickpollen4_w4_t1.tif: [testng] [2024-09-03 01:25:27,727] [pool-1-thread-8] Initializing /data/unknown/epsImgColony.tif: [testng] [2024-09-03 01:25:28,088] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z029.tif: [testng] [2024-09-03 01:25:28,453] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0221.TIF: [testng] [2024-09-03 01:25:28,838] [pool-1-thread-8] Initializing /data/julien/Desantabarbaraduodenum.TIF: [testng] [2024-09-03 01:25:29,096] [pool-1-thread-12] Initializing /data/john/C100915-MA_AXIS_LEH_IMAGE_KIND_FLAT_ICE_3.tif: [testng] [2024-09-03 01:25:29,771] [pool-1-thread-8] Initializing /data/josiah/cell-Z38.C0.tiff: [testng] [2024-09-03 01:25:30,079] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z063.tif: [testng] [2024-09-03 01:25:30,095] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z011.tif: [testng] [2024-09-03 01:25:30,335] [pool-1-thread-12] Initializing /data/jcb/SuppFig5D.tif: [testng] [2024-09-03 01:25:30,372] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C1_Z034.tif: [testng] [2024-09-03 01:25:30,420] [pool-1-thread-10] Initializing /data/josiah/cell-Z16.C1.tiff: [testng] [2024-09-03 01:25:30,758] [pool-1-thread-8] Initializing /data/sub-resolution/Leica-2/Leica-2-subifds.tiff: [testng] [2024-09-03 01:25:30,835] [pool-1-thread-10] Initializing /data/public/condensation/A5.pattern3.tif: [testng] [2024-09-03 01:25:31,323] [pool-1-thread-10] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-05.tiff: [testng] [2024-09-03 01:25:31,517] [pool-1-thread-12] Initializing /data/josiah/cell-Z22.C0.tiff: [testng] [2024-09-03 01:25:31,539] [pool-1-thread-10] Initializing /data/josiah/cell-Z3.C1.tiff: [testng] [2024-09-03 01:25:31,914] [pool-1-thread-10] Initializing /data/paul-van-schayck/myfile.tif: [testng] [2024-09-03 01:25:31,978] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C0_Z034.tif: [testng] [2024-09-03 01:25:32,225] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0206.TIF: [testng] [2024-09-03 01:25:32,356] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C0_Z026.tif: [testng] [2024-09-03 01:25:32,426] [pool-1-thread-3] Initializing /data/chris-wood/ticket-10050/cjw_stowers.tif: [testng] [2024-09-03 01:25:32,600] [pool-1-thread-2] Initializing /data/curtis/map/jumps-over: [testng] [2024-09-03 01:25:32,630] [pool-1-thread-12] Initializing /data/josh/NESb_C2_TP10.tiff: [testng] [2024-09-03 01:25:33,013] [pool-1-thread-2] Initializing /data/stephane/Fluid Dynamics.tif: [testng] [2024-09-03 01:25:33,192] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z048.tif: [testng] [2024-09-03 01:25:33,282] [pool-1-thread-2] Initializing /data/josiah/cell-Z0.C1.tiff: [testng] [2024-09-03 01:25:33,411] [pool-1-thread-10] Initializing /data/brian/PlantCell/PlantCell_C0_Z028.tif: [testng] [2024-09-03 01:25:33,601] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0241.TIF: [testng] [2024-09-03 01:25:33,659] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C1_Z037.tif: [testng] [2024-09-03 01:25:33,798] [pool-1-thread-10] Initializing /data/josiah/cell-Z37.C1.tiff: [testng] [2024-09-03 01:25:34,053] [pool-1-thread-12] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs012.TIF: [testng] [2024-09-03 01:25:34,256] [pool-1-thread-10] Initializing /data/brian/retina/retina_C1_Z047.tif: [testng] [2024-09-03 01:25:34,446] [pool-1-thread-2] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs016.TIF: [testng] [2024-09-03 01:25:34,652] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z034.tif: [testng] [2024-09-03 01:25:34,862] [pool-1-thread-10] Initializing /data/josiah/cell-Z14.C0.tiff: [testng] [2024-09-03 01:25:35,179] [pool-1-thread-4] Initializing /data/stephane/d01&007.tif: [testng] [2024-09-03 01:25:35,245] [pool-1-thread-12] Initializing /data/josiah/cell-Z14.C1.tiff: [testng] [2024-09-03 01:25:35,373] [pool-1-thread-10] Initializing /data/brian/retina/retina_C1_Z057.tif: [testng] [2024-09-03 01:25:35,461] [pool-1-thread-4] Initializing /data/public/cellprofiler/fruit-fly-cells/POS002.pattern/POS002.pattern: [testng] [2024-09-03 01:25:35,724] [pool-1-thread-2] Initializing /data/public/libtiff/strike.tif: [testng] [2024-09-03 01:25:35,854] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C0_Z021.tif: [testng] [2024-09-03 01:25:35,880] [pool-1-thread-10] Initializing /data/qa-4745/LIBPB476_Figure 1_H_NA_21879.tiff: [testng] [2024-09-03 01:25:36,120] [pool-1-thread-2] Initializing /data/ascb/CYT-90_PasolliMousePanoramic_4800.tif: [testng] [2024-09-03 01:25:36,333] [pool-1-thread-12] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips_fourteen.tiff: [testng] [2024-09-03 01:25:36,658] [pool-1-thread-12] Initializing /data/chris-lesiak/half-float.tiff: [testng] [2024-09-03 01:25:36,834] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C0_Z003.tif: [testng] [2024-09-03 01:25:37,256] [pool-1-thread-8] Initializing /data/sarah/FITC left 100% 1x mag00000.tif: [testng] [2024-09-03 01:25:37,403] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z019.tif: [testng] [2024-09-03 01:25:37,482] [pool-1-thread-9] Initializing /data/ascb/CYT-50_FriendSecretoryPairA_4800.tif: [testng] [2024-09-03 01:25:37,732] [pool-1-thread-12] Initializing /data/carolyn/tumor_4.tif: [testng] [2024-09-03 01:25:37,774] [pool-1-thread-8] Initializing /data/josiah/cell-Z6.C0.tiff: [testng] [2024-09-03 01:25:38,061] [pool-1-thread-10] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-64x64.tiff: [testng] [2024-09-03 01:25:38,119] [pool-1-thread-4] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-64x64.tiff: [testng] [2024-09-03 01:25:38,295] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0238.TIF: [testng] [2024-09-03 01:25:38,478] [pool-1-thread-10] Initializing /data/josiah/cell-Z23.C1.tiff: [testng] [2024-09-03 01:25:38,513] [pool-1-thread-4] Initializing /data/brian/retina/retina_C0_Z008.tif: [testng] [2024-09-03 01:25:38,746] [pool-1-thread-12] Initializing /data/ascb/bad/FND-18_FawcettGolgi_4800.tif: [testng] [2024-09-03 01:25:38,880] [pool-1-thread-4] Initializing /data/josiah/cell-Z1.C0.tiff: [testng] [2024-09-03 01:25:39,185] [pool-1-thread-10] Initializing /data/christine/Image5D_4color test stack/test stack.tif: [testng] [2024-09-03 01:25:39,594] [pool-1-thread-4] Initializing /data/samples/melissa/imagej-4gb/4gb-imagej.tif: [testng] [2024-09-03 01:25:39,715] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z028.tif: [testng] [2024-09-03 01:25:39,975] [pool-1-thread-10] Initializing /data/public/condensation/E4.pattern8.tif: [testng] [2024-09-03 01:25:40,077] [pool-1-thread-8] Initializing /data/david/100umbeads_stack.tif: [testng] [2024-09-03 01:25:40,590] [pool-1-thread-10] Initializing /data/ascb/FND-25a_PaladeGroupLabeled_4800.tif: [testng] [2024-09-03 01:25:42,864] [pool-1-thread-1] Initializing /data/edward/TestDoc2.tif: [testng] [2024-09-03 01:25:43,146] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0246.TIF: [testng] [2024-09-03 01:25:43,328] [pool-1-thread-4] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-05.tiff: [testng] [2024-09-03 01:25:43,606] [pool-1-thread-4] Initializing /data/josiah/cell-Z35.C1.tiff: [testng] [2024-09-03 01:25:43,811] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0248.TIF: [testng] [2024-09-03 01:25:43,935] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z004.tif: [testng] [2024-09-03 01:25:44,059] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z030.tif: [testng] [2024-09-03 01:25:44,207] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z000.tif: [testng] [2024-09-03 01:25:44,363] [pool-1-thread-4] Initializing /data/brian/retina/retina_C0_Z053.tif: [testng] [2024-09-03 01:25:44,490] [pool-1-thread-8] Initializing /data/qa-7589/CalGrid.tif: [testng] [2024-09-03 01:25:44,527] [pool-1-thread-2] Initializing /data/public/libtiff/cramps-tile.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 38266, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 5 minutes 3 seconds Finished: SUCCESS