Started by upstream project "BIOFORMATS-test-repo" build number 171 originally caused by: Started by upstream project "Trigger" build number 194 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins313279305130941079.sh + '[' lim = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_27049_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:21:31,650 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:21:31,652 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:21:31,652 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:31,653 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:31,653 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:21:31,654 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:21:31,654 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:21:31,654 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:31,655 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:31,656 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:21:31,656 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:21:31,656 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:21:31,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:21:31,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:21:31,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:21:31,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:21:31,907 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:21:31,908 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:21:31,908 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:21:31,908 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:21:31,908 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:21:31,909 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:21:31,909 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 254 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-03 01:21:31,926] [main] java.version = 11.0.16 [testng] 01:21:31,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:21:31,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:32,009 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-03_01-21-31.log] [testng] 01:21:32,011 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-09-03 01:21:32,014] [main] testng.directory = /data [testng] [2024-09-03 01:21:32,014] [main] testng.configDirectory = /config [testng] [2024-09-03 01:21:32,026] [main] testng.multiplier = 1.0 [testng] [2024-09-03 01:21:32,028] [main] testng.in-memory = false [testng] [2024-09-03 01:21:32,028] [main] testng.allow-missing = false [testng] [2024-09-03 01:21:32,028] [main] user.language = en [testng] [2024-09-03 01:21:32,028] [main] user.country = ${user.country} [testng] [2024-09-03 01:21:32,028] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-03 01:21:32,463] [main] ---------------------------------------- [testng] [2024-09-03 01:21:32,463] [main] Total files: 21 [testng] [2024-09-03 01:21:32,464] [main] Scan time: 0.434 s (20 ms/file) [testng] [2024-09-03 01:21:32,464] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-03 01:21:33,740] [pool-1-thread-1] Initializing /data/venu/Kontrolle0011.lim: [testng] 01:21:33,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:21:33,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:33,743 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-03_01-21-33.log] [testng] 01:21:33,743 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68276377 - End of configuration. [testng] [2024-09-03 01:21:33,801] [pool-1-thread-12] Initializing /data/venu/Kontrolle0017.lim: [testng] 01:21:33,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:21:33,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:33,803 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-03_01-21-33.log] [testng] 01:21:33,803 |-INFO in ch.qos.logback.core.sift.SiftProcessor@eb6105a - End of configuration. [testng] [2024-09-03 01:21:33,822] [pool-1-thread-11] Initializing /data/venu/Kontrolle0014.lim: [testng] 01:21:33,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:21:33,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:33,824 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-03_01-21-33.log] [testng] 01:21:33,824 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2505476 - End of configuration. [testng] [2024-09-03 01:21:33,847] [pool-1-thread-10] Initializing /data/venu/Kontrolle0009.lim: [testng] 01:21:33,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:21:33,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:33,849 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-03_01-21-33.log] [testng] 01:21:33,849 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23354df1 - End of configuration. [testng] [2024-09-03 01:21:33,864] [pool-1-thread-9] Initializing /data/venu/Kontrolle0012.lim: [testng] 01:21:33,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:21:33,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:33,865 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-03_01-21-33.log] [testng] 01:21:33,865 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d2003a - End of configuration. [testng] [2024-09-03 01:21:33,880] [pool-1-thread-8] Initializing /data/venu/Kontrolle0021.lim: [testng] 01:21:33,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:21:33,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:33,881 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-03_01-21-33.log] [testng] 01:21:33,882 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dc75356 - End of configuration. [testng] [2024-09-03 01:21:33,900] [pool-1-thread-7] Initializing /data/venu/Kontrolle0015.lim: [testng] 01:21:33,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:21:33,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:33,902 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-03_01-21-33.log] [testng] 01:21:33,902 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29beca82 - End of configuration. [testng] [2024-09-03 01:21:33,924] [pool-1-thread-6] Initializing /data/venu/Kontrolle0013.lim: [testng] 01:21:33,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:21:33,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:33,925 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-03_01-21-33.log] [testng] 01:21:33,926 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cb09232 - End of configuration. [testng] [2024-09-03 01:21:33,940] [pool-1-thread-5] Initializing /data/venu/Kontrolle0007.lim: [testng] 01:21:33,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:21:33,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:33,941 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-03_01-21-33.log] [testng] 01:21:33,941 |-INFO in ch.qos.logback.core.sift.SiftProcessor@653f736d - End of configuration. [testng] [2024-09-03 01:21:33,956] [pool-1-thread-4] Initializing /data/venu/Kontrolle0016.lim: [testng] 01:21:33,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:21:33,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:33,957 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-03_01-21-33.log] [testng] 01:21:33,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32f590b5 - End of configuration. [testng] [2024-09-03 01:21:33,971] [pool-1-thread-3] Initializing /data/venu/Kontrolle0005.lim: [testng] 01:21:33,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:21:33,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:33,972 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-03_01-21-33.log] [testng] 01:21:33,972 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f9e93dc - End of configuration. [testng] [2024-09-03 01:21:33,989] [pool-1-thread-2] Initializing /data/venu/Kontrolle0004.lim: [testng] 01:21:33,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:21:33,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:33,990 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-03_01-21-33.log] [testng] 01:21:33,990 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3008f505 - End of configuration. [testng] [2024-09-03 01:21:36,449] [pool-1-thread-7] Initializing /data/venu/Kontrolle0002.lim: [testng] [2024-09-03 01:21:36,466] [pool-1-thread-10] Initializing /data/venu/Kontrolle0019.lim: [testng] [2024-09-03 01:21:36,479] [pool-1-thread-11] Initializing /data/venu/Kontrolle0020.lim: [testng] [2024-09-03 01:21:36,492] [pool-1-thread-2] Initializing /data/venu/Kontrolle0010.lim: [testng] [2024-09-03 01:21:36,505] [pool-1-thread-9] Initializing /data/venu/Kontrolle0003.lim: [testng] [2024-09-03 01:21:36,519] [pool-1-thread-8] Initializing /data/venu/Kontrolle0018.lim: [testng] [2024-09-03 01:21:36,532] [pool-1-thread-1] Initializing /data/venu/Kontrolle0008.lim: [testng] [2024-09-03 01:21:36,545] [pool-1-thread-4] Initializing /data/venu/Kontrolle0001.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 seconds Finished: SUCCESS