Started by upstream project "BIOFORMATS-test-repo" build number 171 originally caused by: Started by upstream project "Trigger" build number 194 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins12888878351796742286.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_27119_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:55:40,557 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:55:40,559 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:55:40,559 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:55:40,560 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:55:40,560 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:55:40,560 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:55:40,561 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:55:40,561 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:55:40,561 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:55:40,562 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:55:40,562 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:55:40,563 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:55:40,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:55:40,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:55:40,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:55:40,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:55:40,778 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:55:40,778 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:55:40,779 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:55:40,779 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:55:40,779 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:55:40,780 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:55:40,780 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 219 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-03 01:55:40,790] [main] java.version = 11.0.16 [testng] 01:55:40,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:55:40,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:40,839 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-03_01-55-40.log] [testng] 01:55:40,840 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-09-03 01:55:40,843] [main] testng.directory = /data [testng] [2024-09-03 01:55:40,843] [main] testng.configDirectory = /config [testng] [2024-09-03 01:55:40,854] [main] testng.multiplier = 1.0 [testng] [2024-09-03 01:55:40,856] [main] testng.in-memory = false [testng] [2024-09-03 01:55:40,856] [main] testng.allow-missing = false [testng] [2024-09-03 01:55:40,856] [main] user.language = en [testng] [2024-09-03 01:55:40,856] [main] user.country = ${user.country} [testng] [2024-09-03 01:55:40,856] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-03 02:02:41,661] [main] ---------------------------------------- [testng] [2024-09-03 02:02:41,662] [main] Total files: 7329 [testng] [2024-09-03 02:02:41,662] [main] Scan time: 420.805 s (57 ms/file) [testng] [2024-09-03 02:02:41,662] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-03 02:05:44,390] [pool-1-thread-1] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] 02:05:44,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:05:44,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:44,393 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-03_02-05-44.log] [testng] 02:05:44,394 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b33dcaf - End of configuration. [testng] [2024-09-03 02:05:44,453] [pool-1-thread-12] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] 02:05:44,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:05:44,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:44,454 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-03_02-05-44.log] [testng] 02:05:44,455 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60abf3e9 - End of configuration. [testng] [2024-09-03 02:05:44,516] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] 02:05:44,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:05:44,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:44,517 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-03_02-05-44.log] [testng] 02:05:44,518 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32d055a6 - End of configuration. [testng] [2024-09-03 02:05:44,539] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] 02:05:44,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:05:44,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:44,547 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-03_02-05-44.log] [testng] 02:05:44,547 |-INFO in ch.qos.logback.core.sift.SiftProcessor@434a5c61 - End of configuration. [testng] [2024-09-03 02:05:44,668] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] 02:05:44,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:05:44,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:44,669 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-03_02-05-44.log] [testng] 02:05:44,670 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ac0b5b5 - End of configuration. [testng] [2024-09-03 02:05:44,738] [pool-1-thread-9] Used files list does not include base file [testng] [2024-09-03 02:05:44,742] [pool-1-thread-8] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] 02:05:44,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:05:44,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:44,743 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-03_02-05-44.log] [testng] 02:05:44,744 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fded053 - End of configuration. [testng] [2024-09-03 02:05:44,834] [pool-1-thread-7] Initializing /data/heiko/sample_2x2.stk: [testng] 02:05:44,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:05:44,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:44,835 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-03_02-05-44.log] [testng] 02:05:44,836 |-INFO in ch.qos.logback.core.sift.SiftProcessor@405ff0b2 - End of configuration. [testng] [2024-09-03 02:05:44,907] [pool-1-thread-6] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] 02:05:44,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:05:44,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:44,908 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-03_02-05-44.log] [testng] 02:05:44,909 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15f405fe - End of configuration. [testng] [2024-09-03 02:05:44,961] [pool-1-thread-5] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] 02:05:44,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:05:44,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:44,962 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-03_02-05-44.log] [testng] 02:05:44,963 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a457d2b - End of configuration. [testng] [2024-09-03 02:05:45,075] [pool-1-thread-4] Initializing /data/qa-16915/m-01.tif: [testng] 02:05:45,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:05:45,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:45,076 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-03_02-05-45.log] [testng] 02:05:45,076 |-INFO in ch.qos.logback.core.sift.SiftProcessor@228832f5 - End of configuration. [testng] [2024-09-03 02:05:45,394] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] 02:05:45,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:05:45,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:45,395 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-03_02-05-45.log] [testng] 02:05:45,396 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a5cf0af - End of configuration. [testng] [2024-09-03 02:05:45,475] [pool-1-thread-2] Initializing /data/grant/X.STK: [testng] 02:05:45,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:05:45,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:45,476 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-03_02-05-45.log] [testng] 02:05:45,476 |-INFO in ch.qos.logback.core.sift.SiftProcessor@441b7f17 - End of configuration. [testng] [2024-09-03 02:05:46,739] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-09-03 02:05:46,807] [pool-1-thread-11] Used files list does not include base file [testng] [2024-09-03 02:05:46,809] [pool-1-thread-8] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-09-03 02:05:47,784] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-03 02:05:47,853] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-09-03 02:05:47,919] [pool-1-thread-10] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-09-03 02:05:48,062] [pool-1-thread-12] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-09-03 02:05:48,859] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-09-03 02:05:48,873] [pool-1-thread-5] Used files list does not include base file [testng] [2024-09-03 02:05:48,875] [pool-1-thread-1] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-09-03 02:05:48,960] [pool-1-thread-8] Initializing /data/samples/10xcalib.tif: [testng] [2024-09-03 02:05:49,112] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-09-03 02:05:49,380] [pool-1-thread-2] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-09-03 02:05:51,408] [pool-1-thread-4] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-09-03 02:05:51,508] [pool-1-thread-8] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-09-03 02:05:51,752] [pool-1-thread-9] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-09-03 02:05:51,816] [pool-1-thread-5] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-09-03 02:05:52,232] [pool-1-thread-7] Initializing /data/samples/zseries.stk: [testng] [2024-09-03 02:05:52,324] [pool-1-thread-3] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-09-03 02:05:52,383] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-09-03 02:05:52,908] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-09-03 02:05:53,161] [pool-1-thread-9] Initializing /data/alex/Selected FITC.stk: [testng] [2024-09-03 02:05:53,236] [pool-1-thread-10] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-09-03 02:05:53,391] [pool-1-thread-7] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-09-03 02:05:53,622] [pool-1-thread-3] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-09-03 02:05:53,754] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-09-03 02:05:53,846] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-09-03 02:05:53,874] [pool-1-thread-5] Used files list does not include base file [testng] [2024-09-03 02:05:54,205] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-09-03 02:05:54,354] [pool-1-thread-10] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-09-03 02:05:54,421] [pool-1-thread-11] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-09-03 02:05:54,497] [pool-1-thread-9] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-09-03 02:05:54,727] [pool-1-thread-5] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-09-03 02:05:56,095] [pool-1-thread-4] Initializing /data/josh/EKM49/EKM49_w2568 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Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-09-03 02:05:59,820] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-09-03 02:06:00,164] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-09-03 02:06:00,237] [pool-1-thread-11] Used files list does not include base file [testng] [2024-09-03 02:06:00,870] [pool-1-thread-12] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-09-03 02:06:01,156] [pool-1-thread-1] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-09-03 02:06:02,007] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-09-03 02:06:02,131] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-09-03 02:06:02,153] [pool-1-thread-10] Used files list does not include base file [testng] [2024-09-03 02:06:02,174] [pool-1-thread-3] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-09-03 02:06:02,350] [pool-1-thread-12] Initializing /data/qa-16915/m-02.tif: [testng] [2024-09-03 02:06:02,896] [pool-1-thread-1] Initializing /data/samples/diatoms3d.stk: [testng] [2024-09-03 02:06:02,970] [pool-1-thread-10] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-09-03 02:06:03,372] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-09-03 02:06:03,402] [pool-1-thread-1] Used files list does not include base file [testng] [2024-09-03 02:06:03,465] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-09-03 02:06:03,597] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-03 02:06:03,883] [pool-1-thread-11] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-09-03 02:06:03,970] [pool-1-thread-10] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-09-03 02:06:04,141] [pool-1-thread-1] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-09-03 02:06:04,261] [pool-1-thread-3] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-09-03 02:06:05,208] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-09-03 02:06:05,261] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-09-03 02:06:05,844] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-09-03 02:06:06,275] [pool-1-thread-10] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-09-03 02:06:06,359] [pool-1-thread-4] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-09-03 02:06:06,632] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-09-03 02:06:06,704] [pool-1-thread-11] Used files list does not include base file [testng] [2024-09-03 02:06:06,705] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-09-03 02:06:06,791] [pool-1-thread-9] Used files list does not include base file [testng] [2024-09-03 02:06:06,792] [pool-1-thread-12] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-09-03 02:06:06,900] [pool-1-thread-6] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-09-03 02:06:08,708] [pool-1-thread-1] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-09-03 02:06:09,501] [pool-1-thread-4] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-09-03 02:06:10,076] [pool-1-thread-7] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-09-03 02:06:10,735] [pool-1-thread-10] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-09-03 02:06:12,996] [pool-1-thread-1] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-09-03 02:06:13,452] [pool-1-thread-9] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-09-03 02:06:13,519] [pool-1-thread-11] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-09-03 02:06:13,715] [pool-1-thread-1] Initializing /data/steve/Experiment2.tif: [testng] [2024-09-03 02:06:14,210] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-09-03 02:06:14,979] [pool-1-thread-3] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-09-03 02:06:15,000] [pool-1-thread-1] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-09-03 02:06:15,312] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-09-03 02:06:15,409] [pool-1-thread-7] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-09-03 02:06:16,016] [pool-1-thread-11] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-09-03 02:06:16,364] [pool-1-thread-3] Initializing /data/qa-16887/m-01.tif: [testng] [2024-09-03 02:06:17,002] [pool-1-thread-1] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-09-03 02:06:17,913] [pool-1-thread-11] Initializing /data/josh/2101to800.stk: [testng] [2024-09-03 02:06:19,211] [pool-1-thread-9] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-09-03 02:06:19,442] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-09-03 02:06:22,009] [pool-1-thread-1] Initializing /data/josh/2101to600b.stk: [testng] [2024-09-03 02:06:26,291] [pool-1-thread-4] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-09-03 02:06:26,391] [pool-1-thread-8] Initializing /data/josh/2101to400astk.stk: [testng] [2024-09-03 02:06:28,186] [pool-1-thread-3] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-09-03 02:06:29,016] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-03 02:06:29,090] [pool-1-thread-7] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-09-03 02:06:29,915] [pool-1-thread-7] Initializing /data/david/tl4.tif: [testng] [2024-09-03 02:06:30,528] [pool-1-thread-12] Initializing /data/samples/zser24.stk: [testng] [2024-09-03 02:06:30,604] [pool-1-thread-9] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-09-03 02:06:30,831] [pool-1-thread-4] Initializing 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Confluency/Serum/Color Combine.tif: [testng] [2024-09-03 02:06:43,224] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-09-03 02:06:43,285] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-09-03 02:06:43,323] [pool-1-thread-3] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-09-03 02:06:43,774] [pool-1-thread-12] Initializing /data/thomas/t_test2001.tif: [testng] [2024-09-03 02:06:43,851] [pool-1-thread-9] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-09-03 02:06:44,054] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-09-03 02:06:44,418] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-09-03 02:06:46,505] [pool-1-thread-5] Initializing /data/jerome/deconv.STK: [testng] [2024-09-03 02:06:46,557] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-09-03 02:06:46,647] [pool-1-thread-3] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-09-03 02:06:46,709] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-09-03 02:06:46,757] [pool-1-thread-7] Used files list does not include base file [testng] [2024-09-03 02:06:46,915] [pool-1-thread-9] Initializing /data/cumol-test-series/23.001: [testng] [2024-09-03 02:06:47,031] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-03 02:06:47,333] [pool-1-thread-5] Initializing /data/ascb/golgi marker.tif: [testng] [2024-09-03 02:06:47,391] [pool-1-thread-3] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-09-03 02:06:47,996] [pool-1-thread-8] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-09-03 02:06:48,232] [pool-1-thread-3] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-09-03 02:06:48,361] [pool-1-thread-12] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-09-03 02:06:48,486] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-09-03 02:06:48,529] [pool-1-thread-10] Used files list does not include base file [testng] [2024-09-03 02:06:48,543] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-09-03 02:06:49,127] [pool-1-thread-4] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-09-03 02:06:55,943] [pool-1-thread-8] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-09-03 02:06:56,202] [pool-1-thread-9] Initializing /data/samples/10xcalib.stk: [testng] [2024-09-03 02:06:56,570] [pool-1-thread-7] Initializing /data/samples/zserEight.stk: [testng] [2024-09-03 02:06:56,713] [pool-1-thread-12] Initializing /data/josh/2101to600e.stk: [testng] [2024-09-03 02:06:57,310] [pool-1-thread-9] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-09-03 02:06:57,621] [pool-1-thread-7] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-09-03 02:06:58,595] [pool-1-thread-9] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-09-03 02:06:59,096] [pool-1-thread-8] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-09-03 02:06:59,451] [pool-1-thread-7] Initializing /data/dave/Z Series.stk: [testng] [2024-09-03 02:06:59,569] [pool-1-thread-10] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-09-03 02:07:00,097] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-09-03 02:07:00,487] [pool-1-thread-8] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-09-03 02:07:00,995] [pool-1-thread-10] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-09-03 02:07:01,149] [pool-1-thread-5] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-09-03 02:07:01,238] [pool-1-thread-9] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-09-03 02:07:01,805] [pool-1-thread-7] Initializing /data/steve/Experiment2.stk: [testng] [2024-09-03 02:07:02,288] [pool-1-thread-12] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-09-03 02:07:02,438] [pool-1-thread-7] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-09-03 02:07:03,124] [pool-1-thread-10] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-09-03 02:07:03,541] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-09-03 02:07:03,653] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-09-03 02:07:04,104] [pool-1-thread-5] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-09-03 02:07:04,262] [pool-1-thread-12] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-09-03 02:07:04,843] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-09-03 02:07:05,337] [pool-1-thread-8] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-09-03 02:07:06,142] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-09-03 02:07:07,199] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-09-03 02:07:07,269] [pool-1-thread-7] Used files list does not include base file [testng] [2024-09-03 02:07:07,346] [pool-1-thread-12] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2024-09-03 02:07:07,427] [pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-09-03 02:07:08,620] [pool-1-thread-1] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-09-03 02:07:08,912] [pool-1-thread-5] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-09-03 02:07:09,226] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-09-03 02:07:09,404] [pool-1-thread-12] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-09-03 02:07:10,042] [pool-1-thread-12] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-09-03 02:07:10,371] [pool-1-thread-1] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-09-03 02:07:10,584] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-09-03 02:07:10,643] [pool-1-thread-3] Used files list does not include base file [testng] [2024-09-03 02:07:10,855] [pool-1-thread-7] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-09-03 02:07:12,307] [pool-1-thread-7] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-09-03 02:07:12,504] [pool-1-thread-10] Initializing /data/thomas/test.tif: [testng] [2024-09-03 02:07:13,298] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-09-03 02:07:13,372] [pool-1-thread-12] Used files list does not include base file [testng] [2024-09-03 02:07:13,393] [pool-1-thread-1] Initializing /data/samples/zserSixteen.stk: [testng] [2024-09-03 02:07:13,515] [pool-1-thread-10] Initializing /data/ascb/mt aim.tif: [testng] [2024-09-03 02:07:13,784] [pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-09-03 02:07:14,264] [pool-1-thread-3] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-09-03 02:07:14,504] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-03 02:07:15,061] [pool-1-thread-1] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-09-03 02:07:15,845] [pool-1-thread-3] Initializing /data/jae/RGB_s34.tif: [testng] [2024-09-03 02:07:15,915] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-09-03 02:07:15,987] [pool-1-thread-1] Used files list does not include base file [testng] [2024-09-03 02:07:16,321] [pool-1-thread-10] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-09-03 02:07:16,611] [pool-1-thread-12] Initializing 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Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-03 02:07:20,063] [pool-1-thread-5] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-09-03 02:07:20,460] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-09-03 02:07:20,591] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-03 02:07:20,797] [pool-1-thread-5] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-09-03 02:07:20,863] [pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-09-03 02:07:21,119] [pool-1-thread-1] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-09-03 02:07:21,552] [pool-1-thread-5] Initializing /data/josh/2101to600f.stk: [testng] [2024-09-03 02:07:24,501] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-09-03 02:07:24,944] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-09-03 02:07:25,519] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-09-03 02:07:25,789] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-09-03 02:07:26,063] [pool-1-thread-1] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-09-03 02:07:26,640] [pool-1-thread-1] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-09-03 02:07:26,774] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-09-03 02:07:26,975] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-09-03 02:07:27,255] [pool-1-thread-3] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 20 minutes 41 seconds Finished: SUCCESS