Started by upstream project "BIOFORMATS-test-repo" build number 171
originally caused by:
Started by upstream project "Trigger" build number 194
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins12858308871887132868.sh
+ '[' imagepro = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_27192_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 02:44:09,328 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:44:09,330 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
[testng] 02:44:09,330 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:44:09,331 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:44:09,332 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:44:09,332 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:44:09,332 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:44:09,332 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:44:09,333 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:44:09,334 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:44:09,334 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:44:09,335 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:44:09,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:44:09,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:44:09,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:44:09,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:44:09,538 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:44:09,538 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:44:09,538 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:44:09,539 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:44:09,539 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
[testng] 02:44:09,540 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
[testng] 02:44:09,540 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 207 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-09-03 02:44:09,549] [main] java.version = 11.0.16
[testng] 02:44:09,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:44:09,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:44:09,595 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-03_02-44-09.log]
[testng] 02:44:09,596 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-09-03 02:44:09,599] [main] testng.directory = /data
[testng] [2024-09-03 02:44:09,599] [main] testng.configDirectory = /config
[testng] [2024-09-03 02:44:09,609] [main] testng.multiplier = 1.0
[testng] [2024-09-03 02:44:09,610] [main] testng.in-memory = false
[testng] [2024-09-03 02:44:09,611] [main] testng.allow-missing = false
[testng] [2024-09-03 02:44:09,611] [main] user.language = en
[testng] [2024-09-03 02:44:09,611] [main] user.country = ${user.country}
[testng] [2024-09-03 02:44:09,611] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-09-03 02:44:10,748] [main] ----------------------------------------
[testng] [2024-09-03 02:44:10,748] [main] Total files: 22
[testng] [2024-09-03 02:44:10,748] [main] Scan time: 1.137 s (51 ms/file)
[testng] [2024-09-03 02:44:10,748] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-09-03 02:44:19,672] [pool-1-thread-1] Initializing /data/converted/dub01.pic:
[testng] 02:44:19,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:44:19,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:44:19,674 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-03_02-44-19.log]
[testng] 02:44:19,675 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32064552 - End of configuration.
[testng] [2024-09-03 02:44:19,725] [pool-1-thread-12] Initializing /data/converted/clown8c.tif:
[testng] 02:44:19,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:44:19,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:44:19,726 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-03_02-44-19.log]
[testng] 02:44:19,727 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c6c56bc - End of configuration.
[testng] [2024-09-03 02:44:19,771] [pool-1-thread-11] Initializing /data/converted/clown.ipw:
[testng] 02:44:19,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:44:19,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:44:19,772 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-03_02-44-19.log]
[testng] 02:44:19,772 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17be8144 - End of configuration.
[testng] [2024-09-03 02:44:19,791] [pool-1-thread-10] Initializing /data/samples/HEART.SEQ:
[testng] 02:44:19,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:44:19,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:44:19,793 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-03_02-44-19.log]
[testng] 02:44:19,793 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17189322 - End of configuration.
[testng] [2024-09-03 02:44:19,844] [pool-1-thread-9] Initializing /data/converted/mitosis-test.ipw:
[testng] 02:44:19,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:44:19,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:44:19,845 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-03_02-44-19.log]
[testng] 02:44:19,845 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60567275 - End of configuration.
[testng] [2024-09-03 02:44:19,897] [pool-1-thread-8] Initializing /data/converted/dub01.seq:
[testng] 02:44:19,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:44:19,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:44:19,898 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-03_02-44-19.log]
[testng] 02:44:19,899 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e27117c - End of configuration.
[testng] [2024-09-03 02:44:19,942] [pool-1-thread-7] Initializing /data/alex/AFAset0003.ips:
[testng] 02:44:19,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:44:19,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:44:19,942 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-03_02-44-19.log]
[testng] 02:44:19,943 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54ea99e5 - End of configuration.
[testng] [2024-09-03 02:44:19,967] [pool-1-thread-6] Initializing /data/converted/clown.tif:
[testng] 02:44:19,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:44:19,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:44:19,968 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-03_02-44-19.log]
[testng] 02:44:19,968 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a7fdfad - End of configuration.
[testng] [2024-09-03 02:44:19,988] [pool-1-thread-5] Initializing /data/xiuwen/head2.seq:
[testng] 02:44:19,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:44:19,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:44:19,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-03_02-44-19.log]
[testng] 02:44:19,989 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bea5deb - End of configuration.
[testng] [2024-09-03 02:44:20,098] [pool-1-thread-4] Initializing /data/converted/NESb_C2_TP7.ipw:
[testng] 02:44:20,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:44:20,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:44:20,099 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-03_02-44-20.log]
[testng] 02:44:20,099 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bd9bf62 - End of configuration.
[testng] [2024-09-03 02:44:20,144] [pool-1-thread-3] Initializing /data/samples/FLDUAL.TIF:
[testng] 02:44:20,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:44:20,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:44:20,145 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-03_02-44-20.log]
[testng] 02:44:20,145 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c794cae - End of configuration.
[testng] [2024-09-03 02:44:20,195] [pool-1-thread-2] Initializing /data/samples/TISSUE.TIF:
[testng] 02:44:20,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:44:20,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:44:20,196 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-03_02-44-20.log]
[testng] 02:44:20,196 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b29a6d1 - End of configuration.
[testng] [2024-09-03 02:44:22,085] [pool-1-thread-9] Initializing /data/converted/NESb_C2_TP7.seq:
[testng] [2024-09-03 02:44:22,107] [pool-1-thread-11] Initializing /data/converted/clown8c.ipw:
[testng] [2024-09-03 02:44:22,116] [pool-1-thread-1] Initializing /data/converted/mitosis-test.tif:
[testng] [2024-09-03 02:44:22,226] [pool-1-thread-10] Initializing /data/converted/clown8c.seq:
[testng] [2024-09-03 02:44:22,237] [pool-1-thread-12] Initializing /data/samples/PROBE.TIF:
[testng] [2024-09-03 02:44:22,251] [pool-1-thread-8] Initializing /data/converted/NESb_C2_TP7.tiff:
[testng] [2024-09-03 02:44:22,316] [pool-1-thread-2] Initializing /data/converted/mitosis-test.seq:
[testng] [2024-09-03 02:44:22,346] [pool-1-thread-3] Initializing /data/converted/dub01.ipw:
[testng] [2024-09-03 02:44:22,366] [pool-1-thread-4] Initializing /data/converted/clown.seq:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 29 seconds
Finished: SUCCESS