Started by upstream project "BIOFORMATS-test-repo" build number 23
originally caused by:
Started by upstream project "Trigger" build number 26
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins4985612477101061199.sh
+ '[' fluoview = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_2859_merge_ci -v /uod/idr/repos/curated/fluoview:/data -v /uod/idr-scratch/merge-ci/curated/fluoview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:09:44,028 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:09:44,030 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 02:09:44,030 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:09:44,031 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:09:44,031 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:09:44,031 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:09:44,032 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:09:44,032 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:09:44,032 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:09:44,032 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:09:44,032 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:09:44,032 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:09:44,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:09:44,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:09:44,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:09:44,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:09:44,288 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:09:44,288 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:09:44,288 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:09:44,289 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:09:44,289 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 02:09:44,290 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 02:09:44,290 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 258 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-05 02:09:44,299] [main] java.version = 1.8.0_342
[testng] 02:09:44,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:09:44,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:09:44,347 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-05_02-09-44.log]
[testng] 02:09:44,348 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-04-05 02:09:44,350] [main] testng.directory = /data
[testng] [2024-04-05 02:09:44,350] [main] testng.configDirectory = /config
[testng] [2024-04-05 02:09:44,363] [main] testng.multiplier = 1.0
[testng] [2024-04-05 02:09:44,363] [main] testng.in-memory = false
[testng] [2024-04-05 02:09:44,363] [main] testng.allow-missing = false
[testng] [2024-04-05 02:09:44,363] [main] user.language = en
[testng] [2024-04-05 02:09:44,363] [main] user.country = ${user.country}
[testng] [2024-04-05 02:09:44,363] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-04-05 02:09:45,169] [main] ----------------------------------------
[testng] [2024-04-05 02:09:45,170] [main] Total files: 14
[testng] [2024-04-05 02:09:45,170] [main] Scan time: 0.805 s (57 ms/file)
[testng] [2024-04-05 02:09:45,170] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-05 02:09:50,426] [pool-1-thread-1] Initializing /data/jae/BrdU.1c-1.z.Live1-25-2005_11-58-40_AM.tif:
[testng] 02:09:50,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:09:50,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:09:50,427 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-05_02-09-50.log]
[testng] 02:09:50,427 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a5738d2 - End of configuration.
[testng] [2024-04-05 02:09:50,478] [pool-1-thread-12] Initializing /data/timg/eric-three.tif:
[testng] 02:09:50,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:09:50,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:09:50,479 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-05_02-09-50.log]
[testng] 02:09:50,480 |-INFO in ch.qos.logback.core.sift.SiftProcessor@243c570d - End of configuration.
[testng] [2024-04-05 02:09:50,566] [pool-1-thread-11] Initializing /data/aaron/olympus_fv500.tif:
[testng] 02:09:50,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:09:50,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:09:50,567 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-05_02-09-50.log]
[testng] 02:09:50,568 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20a68ed3 - End of configuration.
[testng] [2024-04-05 02:09:50,699] [pool-1-thread-10] Initializing /data/timg/eric-three-projection.tif:
[testng] 02:09:50,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:09:50,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:09:50,701 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-05_02-09-50.log]
[testng] 02:09:50,702 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64930170 - End of configuration.
[testng] [2024-04-05 02:09:50,759] [pool-1-thread-9] Initializing /data/timg/eric-one.tif:
[testng] 02:09:50,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:09:50,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:09:50,759 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-05_02-09-50.log]
[testng] 02:09:50,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7683cd0c - End of configuration.
[testng] [2024-04-05 02:09:50,865] [pool-1-thread-8] Initializing /data/timg/LiveOne.tif:
[testng] 02:09:50,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:09:50,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:09:50,865 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-05_02-09-50.log]
[testng] 02:09:50,866 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fc3a721 - End of configuration.
[testng] [2024-04-05 02:09:50,898] [pool-1-thread-7] Initializing /data/brian/DBTRG 2X 1a-1_DSP.TIF:
[testng] 02:09:50,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:09:50,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:09:50,899 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-05_02-09-50.log]
[testng] 02:09:50,900 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61e2e53f - End of configuration.
[testng] [2024-04-05 02:09:50,951] [pool-1-thread-6] Initializing /data/timg/LiveTwo.tif:
[testng] 02:09:50,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:09:50,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:09:50,954 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-05_02-09-50.log]
[testng] 02:09:50,954 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1503ea31 - End of configuration.
[testng] [2024-04-05 02:09:51,018] [pool-1-thread-5] Initializing /data/shalin/40xNA0.6-512x512.tif:
[testng] 02:09:51,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:09:51,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:09:51,019 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-05_02-09-51.log]
[testng] 02:09:51,019 |-INFO in ch.qos.logback.core.sift.SiftProcessor@632154e8 - End of configuration.
[testng] [2024-04-05 02:09:51,116] [pool-1-thread-4] Initializing /data/timg/LiveThree-xyzt.tif:
[testng] 02:09:51,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:09:51,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:09:51,118 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-05_02-09-51.log]
[testng] 02:09:51,118 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4697f863 - End of configuration.
[testng] [2024-04-05 02:09:51,235] [pool-1-thread-3] Initializing /data/brian/DBTRG 2X 1a-1.tif:
[testng] 02:09:51,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:09:51,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:09:51,237 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-05_02-09-51.log]
[testng] 02:09:51,238 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e10d976 - End of configuration.
[testng] [2024-04-05 02:09:51,332] [pool-1-thread-2] Initializing /data/timg/eric-one-3d.tif:
[testng] 02:09:51,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:09:51,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:09:51,333 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-05_02-09-51.log]
[testng] 02:09:51,333 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b4e75fc - End of configuration.
[testng] [2024-04-05 02:09:53,396] [pool-1-thread-8] Initializing /data/timg/E1-v2(11 som).tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 13 seconds
Finished: SUCCESS