Started by upstream project "BIOFORMATS-test-repo" build number 182 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins6887525532613539707.sh + '[' gatan = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_28683_merge_ci -v /uod/idr/repos/curated/gatan:/data -v /uod/idr-scratch/merge-ci/curated/gatan:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 08:38:25,740 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 08:38:25,741 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 08:38:25,741 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:38:25,743 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:38:25,744 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:38:25,744 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:38:25,745 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:38:25,745 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:38:25,746 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:38:25,747 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:38:25,748 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:38:25,748 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:38:25,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:38:25,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:38:25,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:38:25,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:38:25,970 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:38:25,970 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:38:25,970 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:38:25,970 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:38:25,970 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 08:38:25,972 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 08:38:25,972 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 226 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-10 08:38:25,987] [main] java.version = 11.0.16 [testng] 08:38:25,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:38:25,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:38:26,036 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-10_08-38-26.log] [testng] 08:38:26,038 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-09-10 08:38:26,040] [main] testng.directory = /data [testng] [2024-09-10 08:38:26,040] [main] testng.configDirectory = /config [testng] [2024-09-10 08:38:26,050] [main] testng.multiplier = 1.0 [testng] [2024-09-10 08:38:26,052] [main] testng.in-memory = false [testng] [2024-09-10 08:38:26,052] [main] testng.allow-missing = false [testng] [2024-09-10 08:38:26,052] [main] user.language = en [testng] [2024-09-10 08:38:26,052] [main] user.country = ${user.country} [testng] [2024-09-10 08:38:26,052] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-10 08:38:31,644] [main] ---------------------------------------- [testng] [2024-09-10 08:38:31,644] [main] Total files: 103 [testng] [2024-09-10 08:38:31,644] [main] Scan time: 5.591 s (54 ms/file) [testng] [2024-09-10 08:38:31,644] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 98 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-10 08:38:39,920] [pool-1-thread-1] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-1020x1020.tif: [testng] 08:38:39,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:38:39,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:38:39,924 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-10_08-38-39.log] [testng] 08:38:39,925 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13cb270b - End of configuration. [testng] [2024-09-10 08:38:40,009] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0019.dm4: [testng] 08:38:40,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:38:40,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:38:40,012 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-10_08-38-40.log] [testng] 08:38:40,013 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26f5dea8 - End of configuration. [testng] [2024-09-10 08:38:40,043] [pool-1-thread-11] Initializing /data/jayne/AM-2/MonGb2-S8.dm3: [testng] 08:38:40,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:38:40,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:38:40,044 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-10_08-38-40.log] [testng] 08:38:40,044 |-INFO in ch.qos.logback.core.sift.SiftProcessor@189bf79d - End of configuration. [testng] [2024-09-10 08:38:40,064] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0003.dm4: [testng] 08:38:40,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:38:40,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:38:40,065 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-10_08-38-40.log] [testng] 08:38:40,066 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3728d23c - End of configuration. [testng] [2024-09-10 08:38:40,099] [pool-1-thread-9] Initializing /data/jay/camtest1.dm3: [testng] 08:38:40,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:38:40,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:38:40,100 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-10_08-38-40.log] [testng] 08:38:40,100 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fcb720b - End of configuration. [testng] [2024-09-10 08:38:40,121] [pool-1-thread-8] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] 08:38:40,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:38:40,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:38:40,122 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-10_08-38-40.log] [testng] 08:38:40,122 |-INFO in ch.qos.logback.core.sift.SiftProcessor@524de17f - End of configuration. [testng] [2024-09-10 08:38:40,258] [pool-1-thread-7] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] 08:38:40,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:38:40,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:38:40,259 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-10_08-38-40.log] [testng] 08:38:40,260 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79714da3 - End of configuration. [testng] [2024-09-10 08:38:40,433] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0016.dm4: [testng] 08:38:40,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:38:40,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:38:40,435 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-10_08-38-40.log] [testng] 08:38:40,436 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35d0197e - End of configuration. [testng] [2024-09-10 08:38:40,456] [pool-1-thread-5] Initializing /data/qa-21647/Sample2_L1-0002.dm4: [testng] 08:38:40,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:38:40,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:38:40,457 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-10_08-38-40.log] [testng] 08:38:40,457 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b8d9f03 - End of configuration. [testng] [2024-09-10 08:38:40,493] [pool-1-thread-4] Initializing /data/nuno/Prefix_3VBSED_stack_30_slice_0290.dm3: [testng] 08:38:40,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:38:40,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:38:40,494 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-10_08-38-40.log] [testng] 08:38:40,494 |-INFO in ch.qos.logback.core.sift.SiftProcessor@409059a8 - End of configuration. [testng] [2024-09-10 08:38:40,547] [pool-1-thread-3] Initializing /data/jay/DMtest2.dm3: [testng] 08:38:40,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:38:40,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:38:40,548 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-10_08-38-40.log] [testng] 08:38:40,549 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bef57b1 - End of configuration. [testng] [2024-09-10 08:38:40,625] [pool-1-thread-2] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0048.dm4: [testng] 08:38:40,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:38:40,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:38:40,627 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-10_08-38-40.log] [testng] 08:38:40,627 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f8054c7 - End of configuration. [testng] [2024-09-10 08:38:42,934] [pool-1-thread-5] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-09-10 08:38:43,462] [pool-1-thread-1] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0046.dm4: [testng] [2024-09-10 08:38:43,616] [pool-1-thread-12] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0049.dm4: [testng] [2024-09-10 08:38:43,730] [pool-1-thread-10] Initializing /data/jay/graphitedm3.dm3: [testng] [2024-09-10 08:38:43,776] [pool-1-thread-6] Initializing /data/jay/Carbon.34.dm3: [testng] [2024-09-10 08:38:44,931] [pool-1-thread-9] Initializing /data/melissa/annotation-test.tif: [testng] [2024-09-10 08:38:45,417] [pool-1-thread-11] Initializing /data/public/imagesc-36590/SmallMontage0006.dm4: [testng] [2024-09-10 08:38:45,428] [pool-1-thread-3] Initializing /data/jay/biosamplefullframe.dm3: [testng] [2024-09-10 08:38:45,844] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0007.dm4: [testng] [2024-09-10 08:38:45,999] [pool-1-thread-11] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0047.dm4: [testng] [2024-09-10 08:38:46,014] [pool-1-thread-9] Initializing /data/jay/samples/APC2a-e3.tif: [testng] [2024-09-10 08:38:46,255] [pool-1-thread-7] Initializing /data/jay/biosamplefullframetif.tif: [testng] [2024-09-10 08:38:47,867] [pool-1-thread-9] Initializing /data/jay/samples/APC2a-e4.dm3: [testng] [2024-09-10 08:38:48,087] [pool-1-thread-8] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362-smaller.tif: [testng] [2024-09-10 08:38:48,262] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0018.dm4: [testng] [2024-09-10 08:38:48,425] [pool-1-thread-6] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.tif: [testng] [2024-09-10 08:38:48,767] [pool-1-thread-9] Initializing /data/ofra/Co on INT 28-12-10.11.dm3: [testng] [2024-09-10 08:38:49,211] [pool-1-thread-5] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-96x96.tif: [testng] [2024-09-10 08:38:49,350] [pool-1-thread-8] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.dm3: [testng] [2024-09-10 08:38:49,541] [pool-1-thread-3] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-09-10 08:38:49,740] [pool-1-thread-4] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0051.dm4: [testng] [2024-09-10 08:38:49,932] [pool-1-thread-5] Initializing /data/public/imagesc-36590/SmallMontage0008.dm4: [testng] [2024-09-10 08:38:49,943] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0017.dm4: [testng] [2024-09-10 08:38:50,142] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0000.dm4: [testng] [2024-09-10 08:38:50,203] [pool-1-thread-10] Initializing /data/jay/DMtest.dm3: [testng] [2024-09-10 08:38:50,973] [pool-1-thread-5] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0053.dm4: [testng] [2024-09-10 08:38:52,269] [pool-1-thread-7] Initializing /data/jayne/AM-2/MonGb2-S9.dm3: [testng] [2024-09-10 08:38:52,629] [pool-1-thread-9] Initializing /data/jay/samples/APC2a-e4.tif: [testng] [2024-09-10 08:38:53,189] [pool-1-thread-6] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-363.dm3: [testng] [2024-09-10 08:38:54,445] [pool-1-thread-8] Initializing /data/nuno/Prefix_3VBSED_slice_0011.dm3: [testng] [2024-09-10 08:38:54,622] [pool-1-thread-9] Initializing /data/chip/Nanogold-1.dm3: [testng] [2024-09-10 08:38:55,444] [pool-1-thread-10] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-128x128.tif: [testng] [2024-09-10 08:38:56,124] [pool-1-thread-8] Initializing /data/ofra/lowloss.dm3: [testng] [2024-09-10 08:38:56,197] [pool-1-thread-10] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0045.dm4: [testng] [2024-09-10 08:38:56,243] [pool-1-thread-3] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0052.dm4: [testng] [2024-09-10 08:38:56,329] [pool-1-thread-8] Initializing /data/samples/test-tiles.dm3: [testng] [2024-09-10 08:38:57,104] [pool-1-thread-7] Initializing /data/jay/samples/APC2a-e3.dm3: [testng] [2024-09-10 08:38:57,261] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0015.dm4: [testng] [2024-09-10 08:38:57,692] [pool-1-thread-6] Initializing /data/jay/recAmaghi.dm3: [testng] [2024-09-10 08:38:58,131] [pool-1-thread-7] Initializing /data/qa-11392/Example_Gatan_File.dm4: [testng] [2024-09-10 08:38:59,925] [pool-1-thread-8] Initializing /data/jay/dnasample.tif: [testng] [2024-09-10 08:39:00,916] [pool-1-thread-2] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.dm4: [testng] [2024-09-10 08:39:01,426] [pool-1-thread-2] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-09-10 08:39:02,343] [pool-1-thread-6] Initializing /data/jay/recAmag6500dm.dm3: [testng] [2024-09-10 08:39:03,244] [pool-1-thread-9] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-256x256.tif: [testng] [2024-09-10 08:39:04,186] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0010.dm4: [testng] [2024-09-10 08:39:04,198] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0004.dm4: [testng] [2024-09-10 08:39:04,302] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0005.dm4: [testng] [2024-09-10 08:39:04,823] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0009.dm4: [testng] [2024-09-10 08:39:05,286] [pool-1-thread-6] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.dm3: [testng] [2024-09-10 08:39:05,589] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0002.dm4: [testng] [2024-09-10 08:39:05,679] [pool-1-thread-2] Initializing /data/imagesc-3719/Heart_BSE_slice_0019.dm4: [testng] [2024-09-10 08:39:05,802] [pool-1-thread-9] Initializing /data/qa-7642/8.dm4: [testng] [2024-09-10 08:39:06,025] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0001.dm4: [testng] [2024-09-10 08:39:06,092] [pool-1-thread-8] Initializing /data/public/imagesc-36590/SmallMontage0001.dm4: [testng] [2024-09-10 08:39:06,292] [pool-1-thread-11] Initializing /data/jay/smallerfile.dm3: [testng] [2024-09-10 08:39:06,544] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0014.dm4: [testng] [2024-09-10 08:39:06,857] [pool-1-thread-11] Initializing /data/public/imagesc-36590/SmallMontage0004.dm4: [testng] [2024-09-10 08:39:06,969] [pool-1-thread-12] Initializing /data/samples/mode-metadata/mode_format_test.dm3: [testng] [2024-09-10 08:39:07,234] [pool-1-thread-11] Initializing /data/public/imagesc-36590/SmallMontage0000.dm4: [testng] [2024-09-10 08:39:07,304] [pool-1-thread-1] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0050.dm4: [testng] [2024-09-10 08:39:07,389] [pool-1-thread-4] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-480x480.tif: [testng] [2024-09-10 08:39:07,581] [pool-1-thread-9] Initializing /data/public/imagesc-36590/SmallMontage0007.dm4: [testng] [2024-09-10 08:39:07,826] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0006.dm4: [testng] [2024-09-10 08:39:08,015] [pool-1-thread-8] Initializing /data/qa-8007/Prefix_3VBSED_slice_0011.dm3: [testng] [2024-09-10 08:39:08,323] [pool-1-thread-9] Initializing /data/jayne/AM-2/MonGb3-S1.dm3: [testng] [2024-09-10 08:39:08,377] [pool-1-thread-6] Initializing /data/public/imagesc-36590/SmallMontage0005.dm4: [testng] [2024-09-10 08:39:08,659] [pool-1-thread-2] Initializing /data/jay/samples/APC2a-e5.tif: [testng] [2024-09-10 08:39:08,756] [pool-1-thread-4] Initializing /data/qa-21761/example.dm4: [testng] [2024-09-10 08:39:08,808] [pool-1-thread-5] Initializing /data/jayne/AM-2/MonGb3-S3.dm3: [testng] [2024-09-10 08:39:08,938] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0013.dm4: [testng] [2024-09-10 08:39:09,070] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0012.dm4: [testng] [2024-09-10 08:39:09,441] [pool-1-thread-11] Initializing /data/thorsten/60kx_HAADF_03.dm3: [testng] [2024-09-10 08:39:09,537] [pool-1-thread-4] Initializing /data/jay/dnasample1.dm3: [testng] [2024-09-10 08:39:09,933] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0011.dm4: [testng] [2024-09-10 08:39:09,955] [pool-1-thread-9] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2024-09-10 08:39:10,054] [pool-1-thread-2] Initializing /data/jay/samples/APC2a-e5.dm3: [testng] [2024-09-10 08:39:10,163] [pool-1-thread-11] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-799x799.tif: [testng] [2024-09-10 08:39:10,268] [pool-1-thread-6] Initializing /data/public/imagesc-36590/SmallMontage0003.dm4: [testng] [2024-09-10 08:39:10,386] [pool-1-thread-8] Initializing /data/imagesc-3719/Prefix_BSE_slice_0001.dm4: [testng] [2024-09-10 08:39:10,762] [pool-1-thread-6] Initializing /data/jay/ViewDMtest.dm3: [testng] [2024-09-10 08:39:10,775] [pool-1-thread-3] Initializing /data/public/EMPIAR/EMPIAR-10013/BGal_000438_frames.dm4: [testng] [2024-09-10 08:39:10,862] [pool-1-thread-2] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0008.dm4: [testng] [2024-09-10 08:39:11,473] [pool-1-thread-5] Initializing /data/public/imagesc-36590/SmallMontage0002.dm4: [testng] [2024-09-10 08:39:11,484] [pool-1-thread-7] Initializing /data/melissa/annotation-test.dm3: [testng] [2024-09-10 08:39:11,508] [pool-1-thread-12] Initializing /data/jayne/AM-2/MonGb2-S7.dm3: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 5194, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 58 seconds Finished: SUCCESS