Started by upstream project "BIOFORMATS-test-repo" build number 23
originally caused by:
Started by upstream project "Trigger" build number 26
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins2813215120598771535.sh
+ '[' psd = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_2893_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:28:07,102 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:28:07,104 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 02:28:07,104 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:28:07,105 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:28:07,106 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:28:07,106 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:28:07,106 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:28:07,106 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:28:07,107 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:28:07,107 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:28:07,107 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:28:07,107 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:28:07,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:28:07,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:28:07,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:28:07,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:28:07,397 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:28:07,398 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:28:07,398 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:28:07,398 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:28:07,398 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 02:28:07,399 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 02:28:07,399 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 292 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-05 02:28:07,410] [main] java.version = 1.8.0_342
[testng] 02:28:07,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:28:07,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:28:07,464 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-05_02-28-07.log]
[testng] 02:28:07,465 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-04-05 02:28:07,467] [main] testng.directory = /data
[testng] [2024-04-05 02:28:07,468] [main] testng.configDirectory = /config
[testng] [2024-04-05 02:28:07,480] [main] testng.multiplier = 1.0
[testng] [2024-04-05 02:28:07,481] [main] testng.in-memory = false
[testng] [2024-04-05 02:28:07,481] [main] testng.allow-missing = false
[testng] [2024-04-05 02:28:07,481] [main] user.language = en
[testng] [2024-04-05 02:28:07,481] [main] user.country = ${user.country}
[testng] [2024-04-05 02:28:07,481] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-04-05 02:28:08,013] [main] ----------------------------------------
[testng] [2024-04-05 02:28:08,013] [main] Total files: 18
[testng] [2024-04-05 02:28:08,013] [main] Scan time: 0.532 s (29 ms/file)
[testng] [2024-04-05 02:28:08,013] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-05 02:28:09,627] [pool-1-thread-1] Initializing /data/big-images/8kx8k.psd:
[testng] 02:28:09,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:28:09,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:28:09,628 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-05_02-28-09.log]
[testng] 02:28:09,628 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48787b53 - End of configuration.
[testng] [2024-04-05 02:28:09,655] [pool-1-thread-12] Initializing /data/jcb/Fig5A_siHP16h.tif:
[testng] 02:28:09,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:28:09,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:28:09,660 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-05_02-28-09.log]
[testng] 02:28:09,661 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6629724a - End of configuration.
[testng] [2024-04-05 02:28:09,675] [pool-1-thread-11] Initializing /data/jcb/Fig5A_sip1506h.tif:
[testng] 02:28:09,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:28:09,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:28:09,676 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-05_02-28-09.log]
[testng] 02:28:09,677 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76158d53 - End of configuration.
[testng] [2024-04-05 02:28:09,692] [pool-1-thread-10] Initializing /data/qa-7632/23283078__NA_NA_27343.psd:
[testng] 02:28:09,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:28:09,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:28:09,694 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-05_02-28-09.log]
[testng] 02:28:09,694 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47779d7c - End of configuration.
[testng] [2024-04-05 02:28:09,722] [pool-1-thread-9] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd:
[testng] 02:28:09,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:28:09,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:28:09,723 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-05_02-28-09.log]
[testng] 02:28:09,723 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d01428a - End of configuration.
[testng] [2024-04-05 02:28:09,744] [pool-1-thread-8] Initializing /data/qa-4117/caspase gel-1.psd:
[testng] 02:28:09,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:28:09,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:28:09,747 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-05_02-28-09.log]
[testng] 02:28:09,747 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27e86cee - End of configuration.
[testng] [2024-04-05 02:28:09,840] [pool-1-thread-7] Initializing /data/misc/glossy_buttons.psd:
[testng] 02:28:09,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:28:09,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:28:09,841 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-05_02-28-09.log]
[testng] 02:28:09,842 |-INFO in ch.qos.logback.core.sift.SiftProcessor@128cb676 - End of configuration.
[testng] [2024-04-05 02:28:09,858] [pool-1-thread-6] Initializing /data/misc/vig_drawing_1.psd:
[testng] 02:28:09,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:28:09,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:28:09,859 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-05_02-28-09.log]
[testng] 02:28:09,859 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77da2ad8 - End of configuration.
[testng] [2024-04-05 02:28:09,908] [pool-1-thread-5] Initializing /data/cris/house.tif:
[testng] 02:28:09,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:28:09,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:28:09,910 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-05_02-28-09.log]
[testng] 02:28:09,911 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c4eec84 - End of configuration.
[testng] [2024-04-05 02:28:09,969] [pool-1-thread-4] Initializing /data/misc/smilie.psd:
[testng] 02:28:09,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:28:09,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:28:09,971 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-05_02-28-09.log]
[testng] 02:28:09,971 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3928eacb - End of configuration.
[testng] [2024-04-05 02:28:10,001] [pool-1-thread-3] Initializing /data/ascb/607x.psd:
[testng] 02:28:10,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:28:10,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:28:10,002 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-05_02-28-10.log]
[testng] 02:28:10,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@351d9d2b - End of configuration.
[testng] [2024-04-05 02:28:10,089] [pool-1-thread-2] Initializing /data/misc/venus_composite.psd:
[testng] 02:28:10,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:28:10,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:28:10,091 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-05_02-28-10.log]
[testng] 02:28:10,091 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35616516 - End of configuration.
[testng] [2024-04-05 02:28:11,910] [pool-1-thread-5] Initializing /data/ascb/thin&thick fill.2.psd:
[testng] [2024-04-05 02:28:12,316] [pool-1-thread-9] Initializing /data/ascb/423.psd:
[testng] [2024-04-05 02:28:12,416] [pool-1-thread-7] Initializing /data/jcb/Fig5A_sicont6h.tif:
[testng] [2024-04-05 02:28:12,630] [pool-1-thread-4] Initializing /data/misc/glossy_orbs.psd:
[testng] [2024-04-05 02:28:12,646] [pool-1-thread-2] Initializing /data/simon/colour_separated_image.psd:
[testng] [2024-04-05 02:28:12,801] [pool-1-thread-6] Initializing /data/misc/venus_composite_8bit.psd:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 28 seconds
Finished: SUCCESS