Started by upstream project "BIOFORMATS-test-repo" build number 186
originally caused by:
Started by upstream project "Trigger" build number 208
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins9535504981522909956.sh
+ '[' lim = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_29351_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:22:30,779 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:22:30,781 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
[testng] 01:22:30,781 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:22:30,782 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:22:30,783 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:22:30,783 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:22:30,784 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:22:30,784 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:22:30,784 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:22:30,785 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:22:30,785 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:22:30,785 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:22:30,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:22:30,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:22:31,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:22:31,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:22:31,025 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:22:31,025 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:22:31,026 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:22:31,026 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:22:31,026 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
[testng] 01:22:31,027 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
[testng] 01:22:31,027 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 243 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-09-12 01:22:31,038] [main] java.version = 21
[testng] 01:22:31,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:22:31,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:31,097 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-12_01-22-31.log]
[testng] 01:22:31,099 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
[testng] [2024-09-12 01:22:31,101] [main] testng.directory = /data
[testng] [2024-09-12 01:22:31,101] [main] testng.configDirectory = /config
[testng] [2024-09-12 01:22:31,113] [main] testng.multiplier = 1.0
[testng] [2024-09-12 01:22:31,114] [main] testng.in-memory = false
[testng] [2024-09-12 01:22:31,114] [main] testng.allow-missing = false
[testng] [2024-09-12 01:22:31,114] [main] user.language = en
[testng] [2024-09-12 01:22:31,114] [main] user.country = ${user.country}
[testng] [2024-09-12 01:22:31,114] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-09-12 01:22:31,673] [main] ----------------------------------------
[testng] [2024-09-12 01:22:31,673] [main] Total files: 21
[testng] [2024-09-12 01:22:31,673] [main] Scan time: 0.559 s (26 ms/file)
[testng] [2024-09-12 01:22:31,673] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 20 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-09-12 01:22:33,316] [pool-1-thread-1] Initializing /data/venu/Kontrolle0011.lim:
[testng] 01:22:33,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:22:33,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:33,317 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-12_01-22-33.log]
[testng] 01:22:33,318 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c90ad6 - End of configuration.
[testng] [2024-09-12 01:22:33,343] [pool-1-thread-12] Initializing /data/venu/Kontrolle0009.lim:
[testng] 01:22:33,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:22:33,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:33,345 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-12_01-22-33.log]
[testng] 01:22:33,345 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4088058 - End of configuration.
[testng] [2024-09-12 01:22:33,366] [pool-1-thread-11] Initializing /data/venu/Kontrolle0001.lim:
[testng] 01:22:33,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:22:33,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:33,368 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-12_01-22-33.log]
[testng] 01:22:33,368 |-INFO in ch.qos.logback.core.sift.SiftProcessor@576ccf87 - End of configuration.
[testng] [2024-09-12 01:22:33,401] [pool-1-thread-10] Initializing /data/venu/Kontrolle0004.lim:
[testng] 01:22:33,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:22:33,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:33,403 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-12_01-22-33.log]
[testng] 01:22:33,403 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e20cdd - End of configuration.
[testng] [2024-09-12 01:22:33,446] [pool-1-thread-9] Initializing /data/venu/Kontrolle0015.lim:
[testng] 01:22:33,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:22:33,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:33,447 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-12_01-22-33.log]
[testng] 01:22:33,447 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50413c65 - End of configuration.
[testng] [2024-09-12 01:22:33,478] [pool-1-thread-8] Initializing /data/venu/Kontrolle0002.lim:
[testng] 01:22:33,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:22:33,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:33,479 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-12_01-22-33.log]
[testng] 01:22:33,479 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ab2e997 - End of configuration.
[testng] [2024-09-12 01:22:33,516] [pool-1-thread-7] Initializing /data/venu/Kontrolle0021.lim:
[testng] 01:22:33,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:22:33,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:33,518 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-12_01-22-33.log]
[testng] 01:22:33,518 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a07e21f - End of configuration.
[testng] [2024-09-12 01:22:33,553] [pool-1-thread-6] Initializing /data/venu/Kontrolle0013.lim:
[testng] 01:22:33,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:22:33,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:33,555 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-12_01-22-33.log]
[testng] 01:22:33,555 |-INFO in ch.qos.logback.core.sift.SiftProcessor@170c98bf - End of configuration.
[testng] [2024-09-12 01:22:33,578] [pool-1-thread-5] Initializing /data/venu/Kontrolle0010.lim:
[testng] 01:22:33,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:22:33,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:33,580 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-12_01-22-33.log]
[testng] 01:22:33,580 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32ca53c0 - End of configuration.
[testng] [2024-09-12 01:22:33,599] [pool-1-thread-4] Initializing /data/venu/Kontrolle0007.lim:
[testng] 01:22:33,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:22:33,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:33,601 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-12_01-22-33.log]
[testng] 01:22:33,601 |-INFO in ch.qos.logback.core.sift.SiftProcessor@665afd2 - End of configuration.
[testng] [2024-09-12 01:22:33,646] [pool-1-thread-3] Initializing /data/venu/Kontrolle0016.lim:
[testng] 01:22:33,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:22:33,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:33,648 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-12_01-22-33.log]
[testng] 01:22:33,648 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71ebd0da - End of configuration.
[testng] [2024-09-12 01:22:33,670] [pool-1-thread-2] Initializing /data/venu/Kontrolle0020.lim:
[testng] 01:22:33,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:22:33,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:33,671 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-12_01-22-33.log]
[testng] 01:22:33,671 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bfd50b7 - End of configuration.
[testng] [2024-09-12 01:22:36,410] [pool-1-thread-2] Initializing /data/venu/Kontrolle0012.lim:
[testng] [2024-09-12 01:22:36,432] [pool-1-thread-1] Initializing /data/venu/Kontrolle0008.lim:
[testng] [2024-09-12 01:22:36,460] [pool-1-thread-8] Initializing /data/venu/Kontrolle0014.lim:
[testng] [2024-09-12 01:22:36,493] [pool-1-thread-7] Initializing /data/venu/Kontrolle0003.lim:
[testng] [2024-09-12 01:22:36,517] [pool-1-thread-6] Initializing /data/venu/Kontrolle0018.lim:
[testng] [2024-09-12 01:22:36,540] [pool-1-thread-3] Initializing /data/venu/Kontrolle0017.lim:
[testng] [2024-09-12 01:22:36,572] [pool-1-thread-10] Initializing /data/venu/Kontrolle0005.lim:
[testng] [2024-09-12 01:22:36,592] [pool-1-thread-9] Initializing /data/venu/Kontrolle0019.lim:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1060, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 10 seconds
Finished: SUCCESS