Started by upstream project "BIOFORMATS-test-repo" build number 187
originally caused by:
Started by upstream project "Trigger" build number 209
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins5017216984576925197.sh
+ '[' microct = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_29514_merge_ci -v /uod/idr/repos/curated/microct:/data -v /uod/idr-scratch/merge-ci/curated/microct:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:35:28,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:35:28,868 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:35:28,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:35:28,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:35:28,915 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:35:28,916 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:35:28,916 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:35:28,916 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:35:28,916 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration.
[testng] 01:35:28,917 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point
[testng] 01:35:28,917 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 403 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-09-13 01:35:28,928] [main] java.version = 1.8.0_342
[testng] 01:35:28,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:35:28,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:28,982 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-13_01-35-28.log]
[testng] 01:35:28,984 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-09-13 01:35:28,986] [main] testng.directory = /data
[testng] [2024-09-13 01:35:28,986] [main] testng.configDirectory = /config
[testng] [2024-09-13 01:35:28,999] [main] testng.multiplier = 1.0
[testng] [2024-09-13 01:35:28,999] [main] testng.in-memory = false
[testng] [2024-09-13 01:35:28,999] [main] testng.allow-missing = false
[testng] [2024-09-13 01:35:28,999] [main] user.language = en
[testng] [2024-09-13 01:35:28,999] [main] user.country = ${user.country}
[testng] [2024-09-13 01:35:29,000] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-09-13 01:35:33,225] [main] ----------------------------------------
[testng] [2024-09-13 01:35:33,225] [main] Total files: 53
[testng] [2024-09-13 01:35:33,225] [main] Scan time: 4.225 s (79 ms/file)
[testng] [2024-09-13 01:35:33,225] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 53 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-09-13 01:36:07,194] [pool-1-thread-1] Initializing /data/samples/hox-wt-2005042201-humerus/hox-wt-2005042201-humerus.vff:
[testng] 01:36:07,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:36:07,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:07,196 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-13_01-36-07.log]
[testng] 01:36:07,198 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58325151 - End of configuration.
[testng] [2024-09-13 01:36:07,511] [pool-1-thread-12] Initializing /data/samples/how-wt-2005043001/how-wt-2005043001-hand.vff:
[testng] 01:36:07,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:36:07,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:07,513 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-13_01-36-07.log]
[testng] 01:36:07,514 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8ce233b - End of configuration.
[testng] [2024-09-13 01:36:07,968] [pool-1-thread-11] Initializing /data/samples/hox_wt_2005041501/hox-wt-04152005.vff:
[testng] 01:36:07,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:36:07,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:07,970 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-13_01-36-07.log]
[testng] 01:36:07,971 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18b24f2d - End of configuration.
[testng] [2024-09-13 01:36:08,552] [pool-1-thread-10] Initializing /data/samples/hox-wt-2005050901-humerus/hox-wt-20050509-01-humerus.vff:
[testng] 01:36:08,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:36:08,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:08,553 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-13_01-36-08.log]
[testng] 01:36:08,553 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14370f2d - End of configuration.
[testng] [2024-09-13 01:36:09,006] [pool-1-thread-9] Initializing /data/samples/hox-wt-2005050201-humerus/hox-wt-20050502-01-humerus.vff:
[testng] 01:36:09,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:36:09,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:09,007 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-13_01-36-09.log]
[testng] 01:36:09,007 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19f58725 - End of configuration.
[testng] [2024-09-13 01:36:09,477] [pool-1-thread-8] Initializing /data/samples/Ping_1_2003112001/Ping_1_2003112001.vff:
[testng] 01:36:09,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:36:09,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:09,478 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-13_01-36-09.log]
[testng] 01:36:09,478 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21b2750e - End of configuration.
[testng] [2024-09-13 01:36:10,172] [pool-1-thread-7] Initializing /data/samples/hox-wt-2005042701-humerus/hox-wt-2005042701-humerus.vff:
[testng] 01:36:10,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:36:10,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:10,173 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-13_01-36-10.log]
[testng] 01:36:10,174 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11b20067 - End of configuration.
[testng] [2024-09-13 01:36:10,982] [pool-1-thread-6] Initializing /data/samples/hox_wt_2005041201/hox-wt-04122005.vff:
[testng] 01:36:10,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:36:10,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:10,984 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-13_01-36-10.log]
[testng] 01:36:10,984 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43e02431 - End of configuration.
[testng] [2024-09-13 01:36:11,702] [pool-1-thread-5] Initializing /data/samples/hox_wt_2005041101/hox-wt-04112005-a.vff:
[testng] 01:36:11,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:36:11,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:11,703 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-13_01-36-11.log]
[testng] 01:36:11,704 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2138a996 - End of configuration.
[testng] [2024-09-13 01:36:12,395] [pool-1-thread-4] Initializing /data/samples/hox-wt-2005042201-hand/hox-wt-2005042201-hand.vff:
[testng] 01:36:12,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:36:12,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:12,396 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-13_01-36-12.log]
[testng] 01:36:12,396 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fb2d75c - End of configuration.
[testng] [2024-09-13 01:36:12,907] [pool-1-thread-3] Initializing /data/samples/Pepper_2003112000/Pepper_2003112000.vff:
[testng] 01:36:12,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:36:12,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:12,908 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-13_01-36-12.log]
[testng] 01:36:12,909 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3810b433 - End of configuration.
[testng] [2024-09-13 01:36:13,507] [pool-1-thread-2] Initializing /data/samples/hox-wt-2005050904-hand/hox-wt-20050509-04-hand.vff:
[testng] 01:36:13,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:36:13,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:13,508 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-13_01-36-13.log]
[testng] 01:36:13,508 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70f384e2 - End of configuration.
[testng] [2024-09-13 01:36:50,817] [pool-1-thread-2] Initializing /data/samples/hox-wt-2005050904-humerus/hox-wt-20050509-04-humerus.vff:
[testng] [2024-09-13 01:36:54,223] [pool-1-thread-1] Initializing /data/samples/hox-wt-2005050903-humerus/hox-wt-20050509-03-humerus.vff:
[testng] [2024-09-13 01:36:56,145] [pool-1-thread-7] Initializing /data/samples/hox-wt-2005050201-hand/hox-wt-20050502-01-hand.vff:
[testng] [2024-09-13 01:36:58,869] [pool-1-thread-9] Initializing /data/samples/Chick_Embryo_2003121700/Chick_Embryo_2003121700.vff:
[testng] [2024-09-13 01:37:02,021] [pool-1-thread-10] Initializing /data/samples/hox_wt_2005042701/hox-wt-2005042701-hand.vff:
[testng] [2024-09-13 01:37:02,856] [pool-1-thread-4] Initializing /data/samples/hox-wt-2005050801-hand/hox-wt-20050508-01-hand.vff:
[testng] [2024-09-13 01:37:04,342] [pool-1-thread-11] Initializing /data/samples/hox-wt-2005042601-humerus/hox-wt-2005042601-humerus.vff:
[testng] [2024-09-13 01:37:05,698] [pool-1-thread-5] Initializing /data/samples/hox-wt-2005050501-hand/hox-wt-20050505-01-hand.vff:
[testng] [2024-09-13 01:37:06,364] [pool-1-thread-6] Initializing /data/samples/hox-wt-2005050501-humerus/hox-wt-20050505-01-humerus.vff:
[testng] [2024-09-13 01:37:06,762] [pool-1-thread-12] Initializing /data/samples/Mouse_Hand_2004010701/Mouse_Hand_2004010701.vff:
[testng] [2024-09-13 01:37:20,838] [pool-1-thread-8] Initializing /data/samples/hox_wt_2005040501/hox-wt-04052005-a.vff:
[testng] [2024-09-13 01:37:24,046] [pool-1-thread-3] Initializing /data/samples/hox-wt-2005042301-hand/hox-wt-2005042301-hand.vff:
[testng] [2024-09-13 01:37:47,473] [pool-1-thread-5] Initializing /data/samples/mouse_skull_93um/mouse_skull_93um.vff:
[testng] [2024-09-13 01:37:49,117] [pool-1-thread-6] Initializing /data/samples/hox-wt-2005042101-humerus/hox-wt-2005042101-humerus.vff:
[testng] [2024-09-13 01:37:51,622] [pool-1-thread-2] Initializing /data/samples/Ping_1_2003112000/Ping_1_2003112000.vff:
[testng] [2024-09-13 01:37:54,594] [pool-1-thread-1] Initializing /data/samples/hox-wt-2005050901-hand/hox-wt-20050509-01-hand.vff:
[testng] [2024-09-13 01:37:56,743] [pool-1-thread-7] Initializing /data/samples/hox-wt-2005042101-hand/hox-wt-2005042101-hand.vff:
[testng] [2024-09-13 01:37:57,353] [pool-1-thread-11] Initializing /data/samples/hox-wt-2005050801-humerus/hox-wt-20050508-01-humerus.vff:
[testng] [2024-09-13 01:37:57,756] [pool-1-thread-10] Initializing /data/samples/Ping_1_2003112002/Ping_1_2003112002.vff:
[testng] [2024-09-13 01:37:58,363] [pool-1-thread-4] Initializing /data/samples/Statuette_2003112100/Statuette_2003112100.vff:
[testng] [2024-09-13 01:38:08,059] [pool-1-thread-8] Initializing /data/samples/hox_wt_2005041301/hox-wt-04132005.vff:
[testng] [2024-09-13 01:38:11,937] [pool-1-thread-3] Initializing /data/samples/Bat_Large_2003092500/Bat_Large_2003092500.vff:
[testng] [2024-09-13 01:38:17,377] [pool-1-thread-12] Initializing /data/samples/hox-wt-2005042601-hand/hox-wt-2005042601-hand.vff:
[testng] [2024-09-13 01:38:22,622] [pool-1-thread-9] Initializing /data/samples/Mouse_Hand_2004010700/Mouse_Hand_2004010700.vff:
[testng] [2024-09-13 01:38:33,125] [pool-1-thread-5] Initializing /data/samples/Mouse_Hand_2004011200/Mouse_Hand_2004011200.vff:
[testng] [2024-09-13 01:38:36,713] [pool-1-thread-6] Initializing /data/samples/Mouse_ankle_2003091500/AnkleJoint21umvoxels.vff:
[testng] [2024-09-13 01:38:39,091] [pool-1-thread-11] Initializing /data/samples/hox-wt-2005050902-humerus/hox-wt-20050509-02-humerus.vff:
[testng] [2024-09-13 01:38:44,473] [pool-1-thread-7] Initializing /data/samples/hox_wt_2005041401/hox-wt-04142005.vff:
[testng] [2024-09-13 01:38:47,989] [pool-1-thread-1] Initializing /data/samples/Chick_Embryo_2003121201/Chick_Embryo_2003121201.vff:
[testng] [2024-09-13 01:38:53,495] [pool-1-thread-4] Initializing /data/samples/how-wt-2005043001-humerus/how-wt-2005043001-humerus.vff:
[testng] [2024-09-13 01:39:09,644] [pool-1-thread-8] Initializing /data/samples/hox-wt-2005042301-humerus/hox-wt-2005042301-humerus.vff:
[testng] [2024-09-13 01:39:15,778] [pool-1-thread-6] Initializing /data/samples/orig.Mouse_Hand_2004010900/Mouse_Hand_2004010900.vff:
[testng] [2024-09-13 01:39:20,304] [pool-1-thread-10] Initializing /data/samples/hox_wt_2005040401/hox-wt-04042005-a.vff:
[testng] [2024-09-13 01:39:24,268] [pool-1-thread-3] Initializing /data/samples/Bat_Small_2003092500/Bat_Small_2003092500.vff:
[testng] [2024-09-13 01:39:27,362] [pool-1-thread-12] Initializing /data/samples/Mouse_Hand_2004010900/Mouse_Hand_2004010900.vff:
[testng] [2024-09-13 01:39:28,963] [pool-1-thread-2] Initializing /data/samples/hox-wt-2005050902-hand/hox-wt-20050509-02-hand.vff:
[testng] [2024-09-13 01:39:38,939] [pool-1-thread-11] Initializing /data/samples/hox-wt-2005050903-hand/hox-wt-20050509-03-hand.vff:
[testng] [2024-09-13 01:39:41,766] [pool-1-thread-7] Initializing /data/samples/hox_wt_2005040701/hox-wt-04072005-a.vff:
[testng] [2024-09-13 01:39:45,444] [pool-1-thread-9] Initializing /data/samples/Almond_Kiss_2003112600/Almond_Kiss_2003112600.vff:
[testng] [2024-09-13 01:39:48,379] [pool-1-thread-4] Initializing /data/samples/Hersheys_Kiss_2003120100/Hersheys_Kiss_2003120100.vff:
[testng] [2024-09-13 01:39:51,838] [pool-1-thread-5] Initializing /data/samples/Chick_Embryo_2003121200/Chick_Embryo_2003121200.vff:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 2809, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 5 minutes 18 seconds
Finished: SUCCESS