Started by upstream project "BIOFORMATS-test-repo" build number 187
originally caused by:
Started by upstream project "Trigger" build number 209
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins8252356370432113043.sh
+ '[' bigtiff = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_29543_merge_ci -v /uod/idr/repos/curated/bigtiff:/data -v /uod/idr-scratch/merge-ci/curated/bigtiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:43:49,266 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:43:49,268 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 01:43:49,268 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:43:49,269 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:43:49,269 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:43:49,269 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:43:49,269 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:43:49,269 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:43:49,270 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:43:49,270 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:43:49,270 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:43:49,270 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:43:49,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:43:49,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:43:49,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:43:49,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:43:49,541 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:43:49,542 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:43:49,542 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:43:49,542 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:43:49,542 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 01:43:49,543 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 01:43:49,543 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 273 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-09-13 01:43:49,553] [main] java.version = 1.8.0_342
[testng] 01:43:49,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:43:49,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:43:49,606 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-13_01-43-49.log]
[testng] 01:43:49,607 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-09-13 01:43:49,609] [main] testng.directory = /data
[testng] [2024-09-13 01:43:49,610] [main] testng.configDirectory = /config
[testng] [2024-09-13 01:43:49,622] [main] testng.multiplier = 1.0
[testng] [2024-09-13 01:43:49,623] [main] testng.in-memory = false
[testng] [2024-09-13 01:43:49,623] [main] testng.allow-missing = false
[testng] [2024-09-13 01:43:49,623] [main] user.language = en
[testng] [2024-09-13 01:43:49,623] [main] user.country = ${user.country}
[testng] [2024-09-13 01:43:49,623] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-09-13 01:43:50,536] [main] ----------------------------------------
[testng] [2024-09-13 01:43:50,536] [main] Total files: 14
[testng] [2024-09-13 01:43:50,536] [main] Scan time: 0.913 s (65 ms/file)
[testng] [2024-09-13 01:43:50,536] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-09-13 01:44:07,222] [pool-1-thread-1] Initializing /data/samples/BigTIFF.tif:
[testng] 01:44:07,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:44:07,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:44:07,223 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-13_01-44-07.log]
[testng] 01:44:07,224 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37514a9a - End of configuration.
[testng] [2024-09-13 01:44:07,309] [pool-1-thread-12] Initializing /data/samples/BigTIFFMotorola.tif:
[testng] 01:44:07,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:44:07,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:44:07,310 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-13_01-44-07.log]
[testng] 01:44:07,311 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29663c8c - End of configuration.
[testng] [2024-09-13 01:44:07,361] [pool-1-thread-11] Initializing /data/samples/BigTIFFLong.tif:
[testng] 01:44:07,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:44:07,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:44:07,362 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-13_01-44-07.log]
[testng] 01:44:07,363 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28f67549 - End of configuration.
[testng] [2024-09-13 01:44:07,413] [pool-1-thread-10] Initializing /data/colin/7S59P8I1_F00000012.btf:
[testng] 01:44:07,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:44:07,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:44:07,414 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-13_01-44-07.log]
[testng] 01:44:07,415 |-INFO in ch.qos.logback.core.sift.SiftProcessor@278f2aea - End of configuration.
[testng] [2024-09-13 01:44:09,447] [pool-1-thread-9] Initializing /data/samples/Classic.tif:
[testng] 01:44:09,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:44:09,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:44:09,449 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-13_01-44-09.log]
[testng] 01:44:09,450 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b098f95 - End of configuration.
[testng] [2024-09-13 01:44:09,581] [pool-1-thread-8] Initializing /data/samples/BigTIFFMotorolaLongStrips.tif:
[testng] 01:44:09,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:44:09,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:44:09,582 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-13_01-44-09.log]
[testng] 01:44:09,582 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4791d465 - End of configuration.
[testng] [2024-09-13 01:44:09,651] [pool-1-thread-7] Initializing /data/samples/BigTIFFLong8.tif:
[testng] 01:44:09,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:44:09,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:44:09,652 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-13_01-44-09.log]
[testng] 01:44:09,653 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29da072c - End of configuration.
[testng] [2024-09-13 01:44:09,715] [pool-1-thread-6] Initializing /data/carlsen/Olympics8-lzw.tif:
[testng] 01:44:09,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:44:09,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:44:09,716 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-13_01-44-09.log]
[testng] 01:44:09,716 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c6c30a - End of configuration.
[testng] [2024-09-13 01:44:09,783] [pool-1-thread-5] Initializing /data/carlsen/Olympics8.tif:
[testng] 01:44:09,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:44:09,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:44:09,785 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-13_01-44-09.log]
[testng] 01:44:09,785 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f23b84f - End of configuration.
[testng] [2024-09-13 01:44:09,872] [pool-1-thread-4] Initializing /data/samples/BigTIFFSubIFD4.tif:
[testng] 01:44:09,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:44:09,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:44:09,873 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-13_01-44-09.log]
[testng] 01:44:09,873 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6695b9a8 - End of configuration.
[testng] [2024-09-13 01:44:09,931] [pool-1-thread-3] Initializing /data/samples/BigTIFFLong8Tiles.tif:
[testng] 01:44:09,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:44:09,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:44:09,932 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-13_01-44-09.log]
[testng] 01:44:09,932 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ecbe05a - End of configuration.
[testng] [2024-09-13 01:44:09,981] [pool-1-thread-2] Initializing /data/carlsen/Olympics8-raw.tif:
[testng] 01:44:09,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:44:09,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:44:09,982 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-13_01-44-09.log]
[testng] 01:44:09,982 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29a3cfc - End of configuration.
[testng] [2024-09-13 01:44:12,213] [pool-1-thread-7] Initializing /data/samples/BigTIFFSubIFD8.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 43 seconds
Finished: SUCCESS