Started by upstream project "BIOFORMATS-test-repo" build number 187
originally caused by:
 Started by upstream project "Trigger" build number 209
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins13665802819083041282.sh
+ '[' micromanager = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_29588_merge_ci -v /uod/idr/repos/curated/micromanager:/data -v /uod/idr-scratch/merge-ci/curated/micromanager:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 02:17:59,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:17:59,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:17:59,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:17:59,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:17:59,339 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:17:59,339 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:17:59,339 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:17:59,340 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:17:59,340 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration.
   [testng] 02:17:59,341 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point
   [testng] 02:17:59,341 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 491 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-09-13 02:17:59,353] [main] java.version = 1.8.0_342
   [testng] 02:17:59,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:17:59,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:17:59,425 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-13_02-17-59.log]
   [testng] 02:17:59,427 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
   [testng] [2024-09-13 02:17:59,431] [main] testng.directory = /data
   [testng] [2024-09-13 02:17:59,431] [main] testng.configDirectory = /config
   [testng] [2024-09-13 02:17:59,451] [main] testng.multiplier = 1.0
   [testng] [2024-09-13 02:17:59,452] [main] testng.in-memory = false
   [testng] [2024-09-13 02:17:59,452] [main] testng.allow-missing = false
   [testng] [2024-09-13 02:17:59,452] [main] user.language = en
   [testng] [2024-09-13 02:17:59,452] [main] user.country = ${user.country}
   [testng] [2024-09-13 02:17:59,453] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-09-13 02:18:13,002] [main] ----------------------------------------
   [testng] [2024-09-13 02:18:13,002] [main] Total files: 1686
   [testng] [2024-09-13 02:18:13,003] [main] Scan time: 13.549 s (8 ms/file)
   [testng] [2024-09-13 02:18:13,003] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 49 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-09-13 02:24:03,755] [pool-1-thread-1] Initializing /data/eric/GFP-Aladin mCh-Tub_2/Acqusition.xml: 
   [testng] 02:24:03,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:24:03,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:24:03,757 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-13_02-24-03.log]
   [testng] 02:24:03,758 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d927cf1 - End of configuration.
   [testng] [2024-09-13 02:24:03,963] [pool-1-thread-12] Initializing /data/public/1.4.22/thomas/test/test_sep/Pos0/img_000000000_FITC_000.tif: 
   [testng] 02:24:03,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:24:03,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:24:03,964 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-13_02-24-03.log]
   [testng] 02:24:03,965 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cf0ec7d - End of configuration.
   [testng] [2024-09-13 02:24:04,009] [pool-1-thread-11] Initializing /data/nico/test-ASI-Z_181/img_000000004_Cy3_009.tif: 
   [testng] 02:24:04,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:24:04,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:24:04,010 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-13_02-24-04.log]
   [testng] 02:24:04,011 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cec2f54 - End of configuration.
   [testng] [2024-09-13 02:24:04,378] [pool-1-thread-11] Used files list does not include base file
   [testng] [2024-09-13 02:24:04,381] [pool-1-thread-10] Initializing /data/public/1.4.16/serge/Pos1/img_000000000_00-BF0_000.tif: 
   [testng] 02:24:04,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:24:04,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:24:04,383 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-13_02-24-04.log]
   [testng] 02:24:04,383 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a0338bc - End of configuration.
   [testng] [2024-09-13 02:24:04,782] [pool-1-thread-9] Initializing /data/public/1.4.16/serge/Pos2/img_000000000_00-BF0_000.tif: 
   [testng] 02:24:04,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:24:04,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:24:04,784 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-13_02-24-04.log]
   [testng] 02:24:04,784 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ace0878 - End of configuration.
   [testng] [2024-09-13 02:24:05,134] [pool-1-thread-8] Initializing /data/colin/20121205_H_rel_3c_0nm_1/img_000000000_Cy5_000.tif: 
   [testng] 02:24:05,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:24:05,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:24:05,135 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-13_02-24-05.log]
   [testng] 02:24:05,136 |-INFO in ch.qos.logback.core.sift.SiftProcessor@746d260e - End of configuration.
   [testng] [2024-09-13 02:24:06,468] [pool-1-thread-7] Initializing /data/public/1.4.22/thomas/test/test2_stack/MMStack_Pos0_metadata.txt: 
   [testng] 02:24:06,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:24:06,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:24:06,469 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-13_02-24-06.log]
   [testng] 02:24:06,469 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e8a8dc0 - End of configuration.
   [testng] [2024-09-13 02:24:06,500] [pool-1-thread-6] Initializing /data/public/1.4.16/serge/Pos3/img_000000000_00-BF0_000.tif: 
   [testng] 02:24:06,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:24:06,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:24:06,501 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-13_02-24-06.log]
   [testng] 02:24:06,501 |-INFO in ch.qos.logback.core.sift.SiftProcessor@651f89eb - End of configuration.
   [testng] [2024-09-13 02:24:06,747] [pool-1-thread-5] Initializing /data/david/res test/res test.tif: 
   [testng] 02:24:06,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:24:06,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:24:06,748 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-13_02-24-06.log]
   [testng] 02:24:06,748 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73fbf03e - End of configuration.
   [testng] [2024-09-13 02:24:06,873] [pool-1-thread-4] Initializing /data/qa-4984/img_000000000__000.tif: 
   [testng] 02:24:06,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:24:06,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:24:06,874 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-13_02-24-06.log]
   [testng] 02:24:06,875 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64806345 - End of configuration.
   [testng] [2024-09-13 02:24:06,924] [pool-1-thread-3] Initializing /data/public/1.4.16/serge/Pos4/img_000000000_00-BF0_000.tif: 
   [testng] 02:24:06,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:24:06,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:24:06,925 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-13_02-24-06.log]
   [testng] 02:24:06,925 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12babe45 - End of configuration.
   [testng] [2024-09-13 02:24:07,147] [pool-1-thread-2] Initializing /data/nico/test-ASI-Z_181/img_000000004_FITC_008.tif: 
   [testng] 02:24:07,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:24:07,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:24:07,148 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-13_02-24-07.log]
   [testng] 02:24:07,148 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72f73e88 - End of configuration.
   [testng] [2024-09-13 02:24:07,388] [pool-1-thread-2] Used files list does not include base file
   [testng] [2024-09-13 02:24:08,615] [pool-1-thread-7] Initializing /data/nico/test-ASI-Z_181/img_000000004_FITC_006.tif: 
   [testng] [2024-09-13 02:24:08,751] [pool-1-thread-7] Used files list does not include base file
   [testng] [2024-09-13 02:24:08,901] [pool-1-thread-5] Initializing /data/public/1.4.16/serge/Pos5/img_000000000_00-BF0_000.tif: 
   [testng] [2024-09-13 02:24:09,355] [pool-1-thread-4] Initializing /data/nico/test-ASI-Z_181/img_000000004_FITC_007.tif: 
   [testng] [2024-09-13 02:24:09,503] [pool-1-thread-4] Used files list does not include base file
   [testng] [2024-09-13 02:24:09,674] [pool-1-thread-12] Initializing /data/public/1.4.23/jens/fucci_GFP-geminin_RFP-cdt1_2_MMStack_Pos0_metadata.txt: 
   [testng] [2024-09-13 02:24:13,514] [pool-1-thread-1] Initializing /data/david/img_000000000_white_000.tif: 
   [testng] [2024-09-13 02:24:17,722] [pool-1-thread-12] Initializing /data/eik/1-Pos_000_000/img_000000000_Blue_002.tif: 
   [testng] [2024-09-13 02:24:20,215] [pool-1-thread-10] Initializing /data/kally/img_000000000_Brightfield_000.tif: 
   [testng] [2024-09-13 02:24:22,154] [pool-1-thread-6] Initializing /data/david/trial 2 part 3 40x_0/Acqusition.xml: 
   [testng] [2024-09-13 02:24:22,436] [pool-1-thread-9] Initializing /data/scott/EMoffslicefurst2Time_0/img_000000000_491_000.tif: 
   [testng] [2024-09-13 02:24:22,494] [pool-1-thread-3] Initializing /data/qa-17040/hyper2.0_1_MMStack_1-Pos_000_000_metadata.txt: 
   [testng] [2024-09-13 02:24:23,438] [pool-1-thread-3] Initializing /data/scott/EMonslicefurst2Time_0/img_000000000_491_000.tif: 
   [testng] [2024-09-13 02:24:24,350] [pool-1-thread-6] Initializing /data/qa-17040/hyper2.0_1_MMStack_1-Pos_001_000_metadata.txt: 
   [testng] [2024-09-13 02:24:24,414] [pool-1-thread-5] Initializing /data/eric/GFP-Aladin mCh-Tub_0/Acqusition.xml: 
   [testng] [2024-09-13 02:24:26,447] [pool-1-thread-6] Initializing /data/nico/test2/img_000000000_Cy5_000.tif: 
   [testng] [2024-09-13 02:24:27,902] [pool-1-thread-9] Initializing /data/qa-17040/hyper2.0_1_MMStack_1-Pos_000_001_metadata.txt: 
   [testng] [2024-09-13 02:24:28,154] [pool-1-thread-12] Initializing /data/public/1.4.22/thomas/test/test_stack/test_stack_MMStack_Pos0_metadata.txt: 
   [testng] [2024-09-13 02:24:28,558] [pool-1-thread-6] Initializing /data/eric/GFP-Aladin mCh-Tub_1/Acqusition.xml: 
   [testng] [2024-09-13 02:24:28,907] [pool-1-thread-3] Initializing /data/nico/S2-GFP-Histone-Cherry-tub_9_Great2/metadata.txt: 
   [testng] [2024-09-13 02:24:37,289] [pool-1-thread-9] Initializing /data/scott/EMonchanfurst2Time_0/img_000000000_491_000.tif: 
   [testng] [2024-09-13 02:24:37,395] [pool-1-thread-12] Initializing /data/eric/GFP-Aladin mCh-Tub_4/Acqusition.xml: 
   [testng] [2024-09-13 02:24:40,808] [pool-1-thread-1] Initializing /data/nico/MM_test_0/img_0_Cy5_0.tif: 
   [testng] [2024-09-13 02:24:41,451] [pool-1-thread-4] Initializing /data/nico/test-ASI-Z_181/img_000000004_Cy3_008.tif: 
   [testng] [2024-09-13 02:24:41,670] [pool-1-thread-4] Used files list does not include base file
   [testng] [2024-09-13 02:24:41,673] [pool-1-thread-11] Initializing /data/eric/GFP-Aladin mCh-Tub_3/Acqusition.xml: 
   [testng] [2024-09-13 02:24:42,203] [pool-1-thread-2] Initializing /data/scott/EMoffchanfurst2Time_0/img_000000000_491_000.tif: 
   [testng] [2024-09-13 02:24:42,342] [pool-1-thread-7] Initializing /data/public/1.4.22/sebastien/Test_Dataset_MultiPosition_Stack_1_MMStack_Pos0_metadata.txt: 
   [testng] [2024-09-13 02:25:08,130] [pool-1-thread-6] Initializing /data/nico/test-ASI-Z_181/img_000000004_Cy3_006.tif: 
   [testng] [2024-09-13 02:25:08,477] [pool-1-thread-6] Used files list does not include base file
   [testng] [2024-09-13 02:25:08,683] [pool-1-thread-5] Initializing /data/nico/test_1/Acqusition.xml: 
   [testng] [2024-09-13 02:25:10,066] [pool-1-thread-1] Initializing /data/stanislav/s105-GFP-_0/img_000000000_GFP_000.tif: 
   [testng] [2024-09-13 02:25:11,129] [pool-1-thread-9] Initializing /data/pr-3253/img_000000000__000.tif: 
   [testng] [2024-09-13 02:25:13,674] [pool-1-thread-9] Initializing /data/nico/test-ASI-Z_181/img_000000004_Cy3_007.tif: 
   [testng] [2024-09-13 02:25:13,904] [pool-1-thread-9] Used files list does not include base file
   [testng] [2024-09-13 02:25:14,408] [pool-1-thread-2] Initializing /data/public/1.4.16/serge/Pos0/img_000000000_00-BF0_000.tif: 
   [testng] [2024-09-13 02:25:15,631] [pool-1-thread-5] Initializing /data/nico/Untitled_4_multi_file/img_000000000_gfpFast_000.tif: 
   [testng] [2024-09-13 02:25:20,722] [pool-1-thread-1] Initializing /data/public/1.4.22/thomas/test/test2_sep/Pos0/metadata.txt: 
   [testng] [2024-09-13 02:25:21,984] [pool-1-thread-1] Initializing /data/qa-17040/hyper2.0_1_MMStack_1-Pos_001_001_metadata.txt: 
   [testng] [2024-09-13 02:25:23,326] [pool-1-thread-1] Initializing /data/nico/test-ASI-Z_181/img_000000004_FITC_009.tif: 
   [testng] [2024-09-13 02:25:23,511] [pool-1-thread-1] Used files list does not include base file
   [testng] [2024-09-13 02:25:23,660] [pool-1-thread-11] Initializing /data/eric/GFP-Aladin mCh-Tub_5/Acqusition.xml: 
   [testng] [2024-09-13 02:25:28,880] [pool-1-thread-8] Initializing /data/pr-3229/1.4-large-acq-take-2_1_MMStack_Pos0_metadata.txt: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 2597, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 36 minutes 28 seconds
Finished: SUCCESS