Started by upstream project "BIOFORMATS-test-repo" build number 24
originally caused by:
 Started by upstream project "Trigger" build number 27
 originally caused by:
  Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins2808965442682003048.sh
+ '[' li-flim = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_2965_merge_ci -v /uod/idr/repos/curated/li-flim:/data -v /uod/idr-scratch/merge-ci/curated/li-flim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 11:02:17,116 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 11:02:17,118 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
   [testng] 11:02:17,118 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 11:02:17,119 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 11:02:17,119 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 11:02:17,119 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 11:02:17,119 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 11:02:17,119 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 11:02:17,120 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 11:02:17,120 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 11:02:17,121 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 11:02:17,121 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 11:02:17,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 11:02:17,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 11:02:17,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 11:02:17,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 11:02:17,402 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 11:02:17,402 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 11:02:17,402 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 11:02:17,403 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 11:02:17,403 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
   [testng] 11:02:17,404 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
   [testng] 11:02:17,404 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 284 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-04-05 11:02:17,414] [main] java.version = 1.8.0_342
   [testng] 11:02:17,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 11:02:17,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:02:17,467 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-05_11-02-17.log]
   [testng] 11:02:17,468 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
   [testng] [2024-04-05 11:02:17,470] [main] testng.directory = /data
   [testng] [2024-04-05 11:02:17,471] [main] testng.configDirectory = /config
   [testng] [2024-04-05 11:02:17,484] [main] testng.multiplier = 1.0
   [testng] [2024-04-05 11:02:17,484] [main] testng.in-memory = false
   [testng] [2024-04-05 11:02:17,484] [main] testng.allow-missing = false
   [testng] [2024-04-05 11:02:17,484] [main] user.language = en
   [testng] [2024-04-05 11:02:17,484] [main] user.country = ${user.country}
   [testng] [2024-04-05 11:02:17,484] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-04-05 11:02:18,389] [main] ----------------------------------------
   [testng] [2024-04-05 11:02:18,389] [main] Total files: 28
   [testng] [2024-04-05 11:02:18,390] [main] Scan time: 0.905 s (32 ms/file)
   [testng] [2024-04-05 11:02:18,390] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 26 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-04-05 11:02:21,574] [pool-1-thread-1] Initializing /data/samples/reference-extended.fli: 
   [testng] 11:02:21,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 11:02:21,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:02:21,576 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-05_11-02-21.log]
   [testng] 11:02:21,577 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b714186 - End of configuration.
   [testng] [2024-04-05 11:02:21,663] [pool-1-thread-12] Initializing /data/qian/vxl-mbad-737-1um-01687.fli: 
   [testng] 11:02:21,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 11:02:21,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:02:21,665 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-05_11-02-21.log]
   [testng] 11:02:21,665 |-INFO in ch.qos.logback.core.sift.SiftProcessor@585193bf - End of configuration.
   [testng] [2024-04-05 11:02:21,697] [pool-1-thread-11] Initializing /data/qa-17164/ExampleFile - LiFlimReader fix ExposureTime .fli: 
   [testng] 11:02:21,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 11:02:21,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:02:21,698 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-05_11-02-21.log]
   [testng] 11:02:21,698 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f80eb9 - End of configuration.
   [testng] [2024-04-05 11:02:21,718] [pool-1-thread-10] Initializing /data/jean-marie/Flimdata/A Reference fluorescein4ns-CFPbpFILTER.fli: 
   [testng] 11:02:21,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 11:02:21,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:02:21,719 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-05_11-02-21.log]
   [testng] 11:02:21,719 |-INFO in ch.qos.logback.core.sift.SiftProcessor@565d1266 - End of configuration.
   [testng] [2024-04-05 11:02:21,743] [pool-1-thread-9] Initializing /data/LambertInstruments/LambertInstruments-fli-2/16-8bit_CameraSimulator_LI-Camera-Simulator.fli: 
   [testng] 11:02:21,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 11:02:21,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:02:21,744 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-05_11-02-21.log]
   [testng] 11:02:21,745 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69848647 - End of configuration.
   [testng] [2024-04-05 11:02:21,767] [pool-1-thread-8] Initializing /data/jean-marie/Flimdata/lif_A Sample CFP-and-CFPYFP-cells-CFPbpFILTER.fli: 
   [testng] 11:02:21,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 11:02:21,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:02:21,768 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-05_11-02-21.log]
   [testng] 11:02:21,769 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41386f8f - End of configuration.
   [testng] [2024-04-05 11:02:21,793] [pool-1-thread-7] Initializing /data/samples/lifetime-extended.fli: 
   [testng] 11:02:21,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 11:02:21,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:02:21,794 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-05_11-02-21.log]
   [testng] 11:02:21,795 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1982bc18 - End of configuration.
   [testng] [2024-04-05 11:02:21,818] [pool-1-thread-6] Initializing /data/samples/sample-extended.fli: 
   [testng] 11:02:21,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 11:02:21,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:02:21,819 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-05_11-02-21.log]
   [testng] 11:02:21,820 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73b55fcc - End of configuration.
   [testng] [2024-04-05 11:02:21,857] [pool-1-thread-5] Initializing /data/jean-marie/Flimdata/lif_D Sample CFPYFP-cells-CFPbpFILTER-multifreq.fli: 
   [testng] 11:02:21,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 11:02:21,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:02:21,858 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-05_11-02-21.log]
   [testng] 11:02:21,858 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51dd5f59 - End of configuration.
   [testng] [2024-04-05 11:02:21,902] [pool-1-thread-4] Initializing /data/rharkes/2018-11-28_10.04.10_sample_Rhodamine6G.fli: 
   [testng] 11:02:21,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 11:02:21,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:02:21,903 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-05_11-02-21.log]
   [testng] 11:02:21,903 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a1b21dd - End of configuration.
   [testng] [2024-04-05 11:02:21,932] [pool-1-thread-3] Initializing /data/jean-marie/Flimdata/C Sample CFP-and-CFPYFP-cells-CFPbpFILTER-slow timelapse.fli: 
   [testng] 11:02:21,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 11:02:21,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:02:21,932 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-05_11-02-21.log]
   [testng] 11:02:21,933 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14104e00 - End of configuration.
   [testng] [2024-04-05 11:02:21,962] [pool-1-thread-2] Initializing /data/LambertInstruments/cp70-euresys_Lambert HS1000_1875-ST-250(msb).fli: 
   [testng] 11:02:21,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 11:02:21,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:02:21,963 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-05_11-02-21.log]
   [testng] 11:02:21,963 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3379bb2c - End of configuration.
   [testng] [2024-04-05 11:02:23,316] [pool-1-thread-1] Initializing /data/jean-marie/Flimdata/A Sample CFP-and-CFPYFP-cells-CFPbpFILTER.fli: 
   [testng] [2024-04-05 11:02:23,349] [pool-1-thread-7] Initializing /data/LambertInstruments/cp70-siso_Lambert HS1000_1875-ST-250(lsb).fli: 
   [testng] [2024-04-05 11:02:23,554] [pool-1-thread-2] Initializing /data/jean-marie/Flimdata/lif_E Sample Typical-Dicot-Root-Zserie-CSU22.fli: 
   [testng] [2024-04-05 11:02:23,913] [pool-1-thread-8] Initializing /data/jean-marie/Flimdata/lif_C Sample CFP-and-CFPYFP-cells-CFPbpFILTER-slow timelapse.fli: 
   [testng] [2024-04-05 11:02:23,942] [pool-1-thread-9] Initializing /data/samples/sample-simple.fli: 
   [testng] [2024-04-05 11:02:23,957] [pool-1-thread-6] Initializing /data/samples/reference-simple.fli: 
   [testng] [2024-04-05 11:02:24,004] [pool-1-thread-11] Initializing /data/jean-marie/Flimdata/D Sample CFPYFP-cells-CFPbpFILTER-multifreq.fli: 
   [testng] [2024-04-05 11:02:24,042] [pool-1-thread-5] Initializing /data/jean-marie/Flimdata/E Sample Typical-Dicot-Root-Zserie-CSU22.fli: 
   [testng] [2024-04-05 11:02:24,342] [pool-1-thread-4] Initializing /data/jean-marie/IMG_4935.JPG: 
   [testng] [2024-04-05 11:02:24,866] [pool-1-thread-10] Initializing /data/jean-marie/Flimdata/E Reference fluorescein4ns-CSU22.fli: 
   [testng] [2024-04-05 11:02:24,898] [pool-1-thread-12] Initializing /data/jean-marie/Flimdata/C Reference fluorescein4ns-CFPbpFILTER.fli: 
   [testng] [2024-04-05 11:02:24,923] [pool-1-thread-9] Initializing /data/samples/lifetime-simple.fli: 
   [testng] [2024-04-05 11:02:24,933] [pool-1-thread-6] Initializing /data/LambertInstruments/LambertInstruments-fli-2/15-8bit_CameraSimulator_LI-Camera-Simulator.fli: 
   [testng] [2024-04-05 11:02:25,176] [pool-1-thread-9] Initializing /data/jean-marie/IMG_4936.JPG: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1378, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 20 seconds
Finished: SUCCESS