Started by upstream project "BIOFORMATS-test-repo" build number 187
originally caused by:
Started by upstream project "Trigger" build number 209
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins12470968027371025363.sh
+ '[' cellr = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_29650_merge_ci -v /uod/idr/repos/curated/cellr:/data -v /uod/idr-scratch/merge-ci/curated/cellr:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 03:06:12,737 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 03:06:12,739 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 03:06:12,739 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:06:12,741 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:06:12,741 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 03:06:12,741 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 03:06:12,742 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 03:06:12,742 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:06:12,742 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:06:12,742 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 03:06:12,743 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 03:06:12,743 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 03:06:12,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 03:06:12,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 03:06:13,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 03:06:13,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 03:06:13,039 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 03:06:13,039 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 03:06:13,039 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 03:06:13,040 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 03:06:13,040 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 03:06:13,042 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 03:06:13,042 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 300 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-09-13 03:06:13,057] [main] java.version = 1.8.0_342
[testng] 03:06:13,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 03:06:13,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:06:13,117 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-13_03-06-13.log]
[testng] 03:06:13,119 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-09-13 03:06:13,122] [main] testng.directory = /data
[testng] [2024-09-13 03:06:13,122] [main] testng.configDirectory = /config
[testng] [2024-09-13 03:06:13,138] [main] testng.multiplier = 1.0
[testng] [2024-09-13 03:06:13,139] [main] testng.in-memory = false
[testng] [2024-09-13 03:06:13,139] [main] testng.allow-missing = false
[testng] [2024-09-13 03:06:13,139] [main] user.language = en
[testng] [2024-09-13 03:06:13,139] [main] user.country = ${user.country}
[testng] [2024-09-13 03:06:13,139] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-09-13 03:06:43,209] [main] ----------------------------------------
[testng] [2024-09-13 03:06:43,209] [main] Total files: 256
[testng] [2024-09-13 03:06:43,209] [main] Scan time: 30.07 s (117 ms/file)
[testng] [2024-09-13 03:06:43,209] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-09-13 03:07:24,483] [pool-1-thread-1] Initializing /data/viktorie/Structure.jpg:
[testng] 03:07:24,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 03:07:24,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:07:24,485 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-13_03-07-24.log]
[testng] 03:07:24,485 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76e0bfad - End of configuration.
[testng] [2024-09-13 03:07:24,541] [pool-1-thread-12] Initializing /data/qa-17107/LifeScienceDemo/LifeScienceDemoSTAR_d.mtb:
[testng] 03:07:24,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 03:07:24,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:07:24,543 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-13_03-07-24.log]
[testng] 03:07:24,543 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dd358ae - End of configuration.
[testng] [2024-09-13 03:07:24,584] [pool-1-thread-11] Initializing /data/viktorie/2Channels.tif:
[testng] 03:07:24,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 03:07:24,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:07:24,617 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-13_03-07-24.log]
[testng] 03:07:24,618 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5be767eb - End of configuration.
[testng] [2024-09-13 03:07:24,694] [pool-1-thread-10] Initializing /data/colin/08-10-09/08-10-09_d.mtb:
[testng] 03:07:24,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 03:07:24,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:07:24,695 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-13_03-07-24.log]
[testng] 03:07:24,696 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2984a9c6 - End of configuration.
[testng] [2024-09-13 03:07:29,559] [pool-1-thread-9] Initializing /data/viktorie/090902/090902_d.mtb:
[testng] 03:07:29,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 03:07:29,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:07:29,561 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-13_03-07-29.log]
[testng] 03:07:29,561 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56f58fb8 - End of configuration.
[testng] [2024-09-13 03:07:29,600] [pool-1-thread-8] Initializing /data/qa-17107/example2/example2_d.mtb:
[testng] 03:07:29,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 03:07:29,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:07:29,602 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-13_03-07-29.log]
[testng] 03:07:29,602 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b384b29 - End of configuration.
[testng] [2024-09-13 03:07:29,671] [pool-1-thread-7] Initializing /data/qa-6659/12-07-05/12-07-05_d.mtb:
[testng] 03:07:29,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 03:07:29,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:07:29,672 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-13_03-07-29.log]
[testng] 03:07:29,673 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19d80cbf - End of configuration.
[testng] [2024-09-13 03:07:31,366] [pool-1-thread-6] Initializing /data/clare/set_27_on_d.mtb:
[testng] 03:07:31,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 03:07:31,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:07:31,368 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-13_03-07-31.log]
[testng] 03:07:31,368 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b0d5552 - End of configuration.
[testng] [2024-09-13 03:07:31,988] [pool-1-thread-5] Initializing /data/colin/07-06-21/07-06-21_d.mtb:
[testng] 03:07:31,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 03:07:31,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:07:31,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-13_03-07-31.log]
[testng] 03:07:31,989 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e6fca9b - End of configuration.
[testng] [2024-09-13 03:07:32,113] [pool-1-thread-4] Initializing /data/qa-17107/plain/Plain_d.mtb:
[testng] 03:07:32,113 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 03:07:32,113 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:07:32,114 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-13_03-07-32.log]
[testng] 03:07:32,115 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11a38ceb - End of configuration.
[testng] [2024-09-13 03:07:32,161] [pool-1-thread-3] Initializing /data/qa-17107/MaterialsDemo/MaterialsDemo_d.mtb:
[testng] 03:07:32,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 03:07:32,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:07:32,162 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-13_03-07-32.log]
[testng] 03:07:32,163 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23236195 - End of configuration.
[testng] [2024-09-13 03:07:32,254] [pool-1-thread-2] Initializing /data/kees/Mariaelena_d.mtb:
[testng] 03:07:32,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 03:07:32,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:07:32,255 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-13_03-07-32.log]
[testng] 03:07:32,255 |-INFO in ch.qos.logback.core.sift.SiftProcessor@738b120a - End of configuration.
[testng] [2024-09-13 03:07:34,424] [pool-1-thread-1] Initializing /data/viktorie/test/test_d.mtb:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 2 minutes 8 seconds
Finished: SUCCESS