Started by upstream project "BIOFORMATS-test-repo" build number 24
originally caused by:
 Started by upstream project "Trigger" build number 27
 originally caused by:
  Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins13833363853180120217.sh
+ '[' cv7000 = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_2988_merge_ci -v /uod/idr/repos/curated/cv7000:/data -v /uod/idr-scratch/merge-ci/curated/cv7000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 11:18:09,852 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 11:18:09,854 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
   [testng] 11:18:09,854 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 11:18:09,855 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 11:18:09,855 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 11:18:09,855 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 11:18:09,856 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 11:18:09,856 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 11:18:09,856 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 11:18:09,857 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 11:18:09,857 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 11:18:09,857 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 11:18:10,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 11:18:10,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 11:18:10,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 11:18:10,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 11:18:10,130 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 11:18:10,130 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 11:18:10,131 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 11:18:10,131 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 11:18:10,131 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
   [testng] 11:18:10,132 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
   [testng] 11:18:10,132 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 276 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-04-05 11:18:10,142] [main] java.version = 1.8.0_342
   [testng] 11:18:10,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 11:18:10,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:18:10,192 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-05_11-18-10.log]
   [testng] 11:18:10,194 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
   [testng] [2024-04-05 11:18:10,196] [main] testng.directory = /data
   [testng] [2024-04-05 11:18:10,196] [main] testng.configDirectory = /config
   [testng] [2024-04-05 11:18:10,209] [main] testng.multiplier = 1.0
   [testng] [2024-04-05 11:18:10,209] [main] testng.in-memory = false
   [testng] [2024-04-05 11:18:10,209] [main] testng.allow-missing = false
   [testng] [2024-04-05 11:18:10,209] [main] user.language = en
   [testng] [2024-04-05 11:18:10,209] [main] user.country = ${user.country}
   [testng] [2024-04-05 11:18:10,210] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-04-05 11:23:49,804] [main] ----------------------------------------
   [testng] [2024-04-05 11:23:49,805] [main] Total files: 31914
   [testng] [2024-04-05 11:23:49,805] [main] Scan time: 339.594 s (10 ms/file)
   [testng] [2024-04-05 11:23:49,805] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 11 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-04-05 11:24:14,684] [pool-1-thread-1] Initializing /data/nih/180521-OMERO-Multi-Test_20180521_134927/Test-plate-1/Test-plate-1.wpi: 
   [testng] 11:24:14,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 11:24:14,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:24:14,686 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-05_11-24-14.log]
   [testng] 11:24:14,687 |-INFO in ch.qos.logback.core.sift.SiftProcessor@384c42a0 - End of configuration.
   [testng] [2024-04-05 11:24:15,356] [pool-1-thread-11] Initializing /data/public/idr0088/110000251230/110000251230.wpi: 
   [testng] 11:24:15,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 11:24:15,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:24:15,357 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-05_11-24-15.log]
   [testng] 11:24:15,358 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ec5214e - End of configuration.
   [testng] [2024-04-05 11:24:15,788] [pool-1-thread-10] Initializing /data/samples/multiple-actions-per-channel/test-plate.wpi: 
   [testng] 11:24:15,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 11:24:15,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:24:15,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-05_11-24-15.log]
   [testng] 11:24:15,791 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44b8ef5e - End of configuration.
   [testng] [2024-04-05 11:24:16,407] [pool-1-thread-9] Initializing /data/samples/sparse-channels/sparse.wpi: 
   [testng] 11:24:16,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 11:24:16,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:24:16,409 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-05_11-24-16.log]
   [testng] 11:24:16,409 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10913c4a - End of configuration.
   [testng] [2024-04-05 11:24:16,441] [pool-1-thread-8] Initializing /data/samples/multi-action-z/test-plate.wpi: 
   [testng] 11:24:16,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 11:24:16,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:24:16,443 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-05_11-24-16.log]
   [testng] 11:24:16,444 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60b17248 - End of configuration.
   [testng] [2024-04-05 11:24:17,078] [pool-1-thread-7] Initializing /data/glencoe/DW 0003_20161111_111619/AssayPlate_Corning_#3683/AssayPlate_Corning_#3683.wpi: 
   [testng] 11:24:17,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 11:24:17,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:24:17,080 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-05_11-24-17.log]
   [testng] 11:24:17,080 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d81ae04 - End of configuration.
   [testng] [2024-04-05 11:24:17,130] [pool-1-thread-6] Initializing /data/glencoe/DW 0001_20161111_100649/AssayPlate_Corning_#3683/AssayPlate_Corning_#3683.wpi: 
   [testng] 11:24:17,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 11:24:17,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:24:17,131 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-05_11-24-17.log]
   [testng] 11:24:17,131 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a0b60aa - End of configuration.
   [testng] [2024-04-05 11:24:17,547] [pool-1-thread-5] Initializing /data/samples/extra-dirs/AssayPlate_Corning_#3683.wpi: 
   [testng] 11:24:17,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 11:24:17,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:24:17,548 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-05_11-24-17.log]
   [testng] 11:24:17,548 |-INFO in ch.qos.logback.core.sift.SiftProcessor@81f8b4e - End of configuration.
   [testng] [2024-04-05 11:24:17,643] [pool-1-thread-4] Initializing /data/glencoe/DW 0002_20161111_105720/AssayPlate_Corning_#3683/AssayPlate_Corning_#3683.wpi: 
   [testng] 11:24:17,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 11:24:17,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:24:17,644 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-05_11-24-17.log]
   [testng] 11:24:17,644 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b0698c5 - End of configuration.
   [testng] [2024-04-05 11:24:17,699] [pool-1-thread-3] Initializing /data/samples/channel-subset/AssayPlate_Corning_#3683.wpi: 
   [testng] 11:24:17,699 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 11:24:17,699 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:24:17,701 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-05_11-24-17.log]
   [testng] 11:24:17,701 |-INFO in ch.qos.logback.core.sift.SiftProcessor@312974de - End of configuration.
   [testng] [2024-04-05 11:24:17,758] [pool-1-thread-2] Initializing /data/public/idr0093/020/020.wpi: 
   [testng] 11:24:17,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 11:24:17,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:24:17,759 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-05_11-24-17.log]
   [testng] 11:24:17,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@be2cfb7 - End of configuration.
   [testng] 13:26:06,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 13:26:06,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 13:26:06,547 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-05_13-26-06.log]
   [testng] 13:26:06,547 |-INFO in ch.qos.logback.core.sift.SiftProcessor@626766fd - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 583, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 128 minutes 2 seconds
Finished: SUCCESS