Started by upstream project "BIOFORMATS-test-repo" build number 189
originally caused by:
Started by upstream project "Trigger" build number 211
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins1406706753161812182.sh
+ '[' naf = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_29891_merge_ci -v /uod/idr/repos/curated/naf:/data -v /uod/idr-scratch/merge-ci/curated/naf:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:53:52,932 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:53:52,934 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 01:53:52,934 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:53:52,935 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:53:52,935 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:53:52,936 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:53:52,936 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:53:52,936 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:53:52,936 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:53:52,937 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:53:52,937 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:53:52,938 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:53:53,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:53:53,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:53:53,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:53:53,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:53:53,185 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:53:53,185 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:53:53,185 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:53:53,186 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:53:53,186 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 01:53:53,187 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 01:53:53,187 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 251 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-09-15 01:53:53,197] [main] java.version = 17.0.2
[testng] 01:53:53,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:53:53,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:53:53,261 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-15_01-53-53.log]
[testng] 01:53:53,264 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-09-15 01:53:53,267] [main] testng.directory = /data
[testng] [2024-09-15 01:53:53,267] [main] testng.configDirectory = /config
[testng] [2024-09-15 01:53:53,282] [main] testng.multiplier = 1.0
[testng] [2024-09-15 01:53:53,284] [main] testng.in-memory = false
[testng] [2024-09-15 01:53:53,284] [main] testng.allow-missing = false
[testng] [2024-09-15 01:53:53,284] [main] user.language = en
[testng] [2024-09-15 01:53:53,284] [main] user.country = ${user.country}
[testng] [2024-09-15 01:53:53,285] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-09-15 01:53:53,657] [main] ----------------------------------------
[testng] [2024-09-15 01:53:53,657] [main] Total files: 9
[testng] [2024-09-15 01:53:53,657] [main] Scan time: 0.372 s (41 ms/file)
[testng] [2024-09-15 01:53:53,658] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 9 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-09-15 01:53:55,112] [pool-1-thread-1] Initializing /data/javier/1c.TIF:
[testng] 01:53:55,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:53:55,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:53:55,113 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-15_01-53-55.log]
[testng] 01:53:55,114 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d0d6641 - End of configuration.
[testng] [2024-09-15 01:53:55,239] [pool-1-thread-9] Initializing /data/javier/1b.NAF:
[testng] 01:53:55,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:53:55,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:53:55,240 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-15_01-53-55.log]
[testng] 01:53:55,241 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12a08a66 - End of configuration.
[testng] [2024-09-15 01:53:55,284] [pool-1-thread-8] Initializing /data/javier/1d.NAF:
[testng] 01:53:55,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:53:55,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:53:55,286 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-15_01-53-55.log]
[testng] 01:53:55,286 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ed65d85 - End of configuration.
[testng] [2024-09-15 01:53:55,351] [pool-1-thread-7] Initializing /data/javier/1d.TIF:
[testng] 01:53:55,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:53:55,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:53:55,353 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-15_01-53-55.log]
[testng] 01:53:55,353 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b5d0bc2 - End of configuration.
[testng] [2024-09-15 01:53:55,416] [pool-1-thread-6] Initializing /data/javier/1c.NAF:
[testng] 01:53:55,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:53:55,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:53:55,417 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-15_01-53-55.log]
[testng] 01:53:55,417 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72d5b82e - End of configuration.
[testng] [2024-09-15 01:53:55,447] [pool-1-thread-5] Initializing /data/cesare/Mscc7.NAF:
[testng] 01:53:55,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:53:55,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:53:55,448 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-15_01-53-55.log]
[testng] 01:53:55,449 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4112e6c6 - End of configuration.
[testng] [2024-09-15 01:53:55,553] [pool-1-thread-4] Initializing /data/javier/1b.TIF:
[testng] 01:53:55,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:53:55,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:53:55,555 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-15_01-53-55.log]
[testng] 01:53:55,555 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fefec7f - End of configuration.
[testng] [2024-09-15 01:53:55,673] [pool-1-thread-3] Initializing /data/javier/1a.NAF:
[testng] 01:53:55,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:53:55,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:53:55,674 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-15_01-53-55.log]
[testng] 01:53:55,675 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3361979e - End of configuration.
[testng] [2024-09-15 01:53:55,709] [pool-1-thread-2] Initializing /data/javier/1a.TIF:
[testng] 01:53:55,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:53:55,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:53:55,711 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-15_01-53-55.log]
[testng] 01:53:55,711 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fdf7745 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 477, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 10 seconds
Finished: SUCCESS