Started by upstream project "BIOFORMATS-test-repo" build number 1
originally caused by:
Started by upstream project "Trigger" build number 1
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins2983259368208971729.sh
+ '[' fei = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_30_merge_ci -v /uod/idr/repos/curated/fei:/data -v /uod/idr-scratch/devspace/curated/fei:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 16:06:17,391 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 16:06:17,393 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
[testng] 16:06:17,393 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 16:06:17,395 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 16:06:17,395 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 16:06:17,396 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 16:06:17,396 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 16:06:17,396 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 16:06:17,397 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 16:06:17,398 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 16:06:17,398 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 16:06:17,399 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 16:06:17,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 16:06:17,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 16:06:17,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 16:06:17,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 16:06:17,619 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 16:06:17,619 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 16:06:17,619 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 16:06:17,620 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 16:06:17,620 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
[testng] 16:06:17,621 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
[testng] 16:06:17,621 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 224 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-03-14 16:06:17,631] [main] java.version = 21
[testng] 16:06:17,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 16:06:17,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:06:17,677 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-14_16-06-17.log]
[testng] 16:06:17,679 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
[testng] [2024-03-14 16:06:17,680] [main] testng.directory = /data
[testng] [2024-03-14 16:06:17,681] [main] testng.configDirectory = /config
[testng] [2024-03-14 16:06:17,690] [main] testng.multiplier = 1.0
[testng] [2024-03-14 16:06:17,690] [main] testng.in-memory = false
[testng] [2024-03-14 16:06:17,690] [main] testng.allow-missing = false
[testng] [2024-03-14 16:06:17,690] [main] user.language = en
[testng] [2024-03-14 16:06:17,690] [main] user.country = ${user.country}
[testng] [2024-03-14 16:06:17,691] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-03-14 16:06:19,249] [main] ----------------------------------------
[testng] [2024-03-14 16:06:19,249] [main] Total files: 21
[testng] [2024-03-14 16:06:19,249] [main] Scan time: 1.558 s (74 ms/file)
[testng] [2024-03-14 16:06:19,250] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-03-14 16:06:22,172] [pool-1-thread-1] Initializing /data/antoine/Tile_001-002-000_0-000.tif:
[testng] 16:06:22,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 16:06:22,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:06:22,175 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-14_16-06-22.log]
[testng] 16:06:22,175 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a289989 - End of configuration.
[testng] [2024-03-14 16:06:22,287] [pool-1-thread-12] Initializing /data/venu/VENU01.TIF:
[testng] 16:06:22,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 16:06:22,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:06:22,288 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-14_16-06-22.log]
[testng] 16:06:22,289 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4eb79570 - End of configuration.
[testng] [2024-03-14 16:06:22,385] [pool-1-thread-11] Initializing /data/venu/VENU03.IMG:
[testng] 16:06:22,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 16:06:22,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:06:22,386 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-14_16-06-22.log]
[testng] 16:06:22,387 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dd0a065 - End of configuration.
[testng] [2024-03-14 16:06:22,412] [pool-1-thread-10] Initializing /data/venu/VENU_Four.TIF:
[testng] 16:06:22,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 16:06:22,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:06:22,413 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-14_16-06-22.log]
[testng] 16:06:22,414 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71cd7bee - End of configuration.
[testng] [2024-03-14 16:06:22,475] [pool-1-thread-9] Initializing /data/venu/VENU01.IMG:
[testng] 16:06:22,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 16:06:22,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:06:22,476 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-14_16-06-22.log]
[testng] 16:06:22,476 |-INFO in ch.qos.logback.core.sift.SiftProcessor@476b8b9f - End of configuration.
[testng] [2024-03-14 16:06:22,502] [pool-1-thread-8] Initializing /data/venu/VENU_Five.TIF:
[testng] 16:06:22,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 16:06:22,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:06:22,503 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-14_16-06-22.log]
[testng] 16:06:22,503 |-INFO in ch.qos.logback.core.sift.SiftProcessor@578ebfbf - End of configuration.
[testng] [2024-03-14 16:06:22,581] [pool-1-thread-7] Initializing /data/venu/VENU_Seven.TIF:
[testng] 16:06:22,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 16:06:22,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:06:22,582 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-14_16-06-22.log]
[testng] 16:06:22,583 |-INFO in ch.qos.logback.core.sift.SiftProcessor@512a68d9 - End of configuration.
[testng] [2024-03-14 16:06:22,643] [pool-1-thread-6] Initializing /data/peter/ZC_PTCS_ED_1000x_002.tif:
[testng] 16:06:22,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 16:06:22,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:06:22,644 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-14_16-06-22.log]
[testng] 16:06:22,645 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4164d7a - End of configuration.
[testng] [2024-03-14 16:06:22,718] [pool-1-thread-5] Initializing /data/steffen/Batman_008.tif:
[testng] 16:06:22,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 16:06:22,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:06:22,719 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-14_16-06-22.log]
[testng] 16:06:22,719 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2afd251f - End of configuration.
[testng] [2024-03-14 16:06:22,782] [pool-1-thread-4] Initializing /data/venu/VENU02.TIF:
[testng] 16:06:22,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 16:06:22,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:06:22,783 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-14_16-06-22.log]
[testng] 16:06:22,783 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36e936b1 - End of configuration.
[testng] [2024-03-14 16:06:22,856] [pool-1-thread-3] Initializing /data/qa-4264/08.51.17 CCD Acquire-Acquire CCD Image Display-Acquire CCD -0.tif:
[testng] 16:06:22,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 16:06:22,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:06:22,857 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-14_16-06-22.log]
[testng] 16:06:22,858 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76c950a8 - End of configuration.
[testng] [2024-03-14 16:06:22,937] [pool-1-thread-2] Initializing /data/venu/VENU_Eight.TIF:
[testng] 16:06:22,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 16:06:22,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:06:22,938 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-14_16-06-22.log]
[testng] 16:06:22,939 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bf042b4 - End of configuration.
[testng] [2024-03-14 16:06:25,806] [pool-1-thread-9] Initializing /data/venu/VENU03.TIF:
[testng] [2024-03-14 16:06:25,981] [pool-1-thread-10] Initializing /data/qa-11061/Tile_020-009-000_0.tif:
[testng] [2024-03-14 16:06:26,095] [pool-1-thread-2] Initializing /data/venu/VENU_Six.TIF:
[testng] [2024-03-14 16:06:26,260] [pool-1-thread-6] Initializing /data/venu/VENU02.IMG:
[testng] [2024-03-14 16:06:26,306] [pool-1-thread-4] Initializing /data/venu/VENU.TIF:
[testng] [2024-03-14 16:06:26,399] [pool-1-thread-12] Initializing /data/qa-10514/TITAN_FEI_TIFF_Test_Image.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 14 seconds
Finished: SUCCESS