Started by upstream project "BIOFORMATS-test-repo" build number 190
originally caused by:
Started by upstream project "Trigger" build number 212
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins15281335834630119087.sh
+ '[' specs = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_30019_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:39:20,739 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:39:20,741 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 01:39:20,741 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:39:20,742 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:39:20,743 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:39:20,743 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:39:20,743 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:39:20,743 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:39:20,744 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:39:20,744 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:39:20,744 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:39:20,744 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:39:20,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:39:20,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:39:21,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:39:21,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:39:21,028 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:39:21,028 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:39:21,028 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:39:21,029 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:39:21,029 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 01:39:21,030 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 01:39:21,030 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 286 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-09-16 01:39:21,040] [main] java.version = 1.8.0_342
[testng] 01:39:21,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:39:21,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:39:21,096 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-16_01-39-21.log]
[testng] 01:39:21,098 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-09-16 01:39:21,101] [main] testng.directory = /data
[testng] [2024-09-16 01:39:21,101] [main] testng.configDirectory = /config
[testng] [2024-09-16 01:39:21,114] [main] testng.multiplier = 1.0
[testng] [2024-09-16 01:39:21,115] [main] testng.in-memory = false
[testng] [2024-09-16 01:39:21,115] [main] testng.allow-missing = false
[testng] [2024-09-16 01:39:21,115] [main] user.language = fr
[testng] [2024-09-16 01:39:21,115] [main] user.country = FR
[testng] [2024-09-16 01:39:21,115] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-09-16 01:39:39,122] [main] ----------------------------------------
[testng] [2024-09-16 01:39:39,122] [main] Total files: 226
[testng] [2024-09-16 01:39:39,122] [main] Scan time: 18.007 s (79 ms/file)
[testng] [2024-09-16 01:39:39,122] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 28 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-09-16 01:39:50,185] [pool-1-thread-1] Initializing /data/fluoview/SpineAnimation.avi:
[testng] 01:39:50,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:39:50,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:39:50,187 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-16_01-39-50.log]
[testng] 01:39:50,188 |-INFO in ch.qos.logback.core.sift.SiftProcessor@671a42cc - End of configuration.
[testng] [2024-09-16 01:39:50,249] [pool-1-thread-12] Initializing /data/iplab/Color Image.IPL:
[testng] 01:39:50,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:39:50,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:39:50,250 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-16_01-39-50.log]
[testng] 01:39:50,251 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c29db4a - End of configuration.
[testng] [2024-09-16 01:39:50,262] [pool-1-thread-11] Initializing /data/fluoview/Sample_XYT.TIF:
[testng] 01:39:50,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:39:50,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:39:50,263 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-16_01-39-50.log]
[testng] 01:39:50,264 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40b47d84 - End of configuration.
[testng] [2024-09-16 01:39:50,344] [pool-1-thread-10] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3:
[testng] 01:39:50,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:39:50,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:39:50,346 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-16_01-39-50.log]
[testng] 01:39:50,346 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2934cac1 - End of configuration.
[testng] [2024-09-16 01:39:50,356] [pool-1-thread-9] Initializing /data/fluoview/SpineAnimation.tif:
[testng] 01:39:50,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:39:50,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:39:50,357 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-16_01-39-50.log]
[testng] 01:39:50,357 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15c9ddcc - End of configuration.
[testng] [2024-09-16 01:39:50,425] [pool-1-thread-8] Initializing /data/iplab/Blend_Fitc.IPL:
[testng] 01:39:50,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:39:50,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:39:50,427 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-16_01-39-50.log]
[testng] 01:39:50,427 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65935ee9 - End of configuration.
[testng] [2024-09-16 01:39:50,440] [pool-1-thread-7] Initializing /data/iplab/3t3 Cell.IPL:
[testng] 01:39:50,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:39:50,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:39:50,442 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-16_01-39-50.log]
[testng] 01:39:50,442 |-INFO in ch.qos.logback.core.sift.SiftProcessor@716a12d3 - End of configuration.
[testng] [2024-09-16 01:39:50,450] [pool-1-thread-6] Initializing /data/iplab/Color Histology.IPL:
[testng] 01:39:50,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:39:50,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:39:50,451 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-16_01-39-50.log]
[testng] 01:39:50,451 |-INFO in ch.qos.logback.core.sift.SiftProcessor@103c16ea - End of configuration.
[testng] [2024-09-16 01:39:50,465] [pool-1-thread-5] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm:
[testng] 01:39:50,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:39:50,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:39:50,467 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-16_01-39-50.log]
[testng] 01:39:50,468 |-INFO in ch.qos.logback.core.sift.SiftProcessor@658851d3 - End of configuration.
[testng] [2024-09-16 01:39:50,583] [pool-1-thread-4] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3:
[testng] 01:39:50,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:39:50,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:39:50,585 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-16_01-39-50.log]
[testng] 01:39:50,585 |-INFO in ch.qos.logback.core.sift.SiftProcessor@690351fd - End of configuration.
[testng] [2024-09-16 01:39:50,611] [pool-1-thread-3] Initializing /data/iplab/Actin.IPL:
[testng] 01:39:50,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:39:50,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:39:50,612 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-16_01-39-50.log]
[testng] 01:39:50,613 |-INFO in ch.qos.logback.core.sift.SiftProcessor@615ef94e - End of configuration.
[testng] [2024-09-16 01:39:50,621] [pool-1-thread-2] Initializing /data/fluoview/sample_labled_XYTCh.tif:
[testng] 01:39:50,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:39:50,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:39:50,622 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-16_01-39-50.log]
[testng] 01:39:50,623 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38a3da3d - End of configuration.
[testng] [2024-09-16 01:39:52,710] [pool-1-thread-12] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3:
[testng] [2024-09-16 01:39:52,724] [pool-1-thread-9] Initializing /data/fluoview/sample_labled_XYZTCh.tif:
[testng] [2024-09-16 01:39:52,761] [pool-1-thread-6] Initializing /data/iplab/Blend_Dapi.IPL:
[testng] [2024-09-16 01:39:52,776] [pool-1-thread-3] Initializing /data/fluoview/Sample_XYZ.TIF:
[testng] [2024-09-16 01:39:52,873] [pool-1-thread-7] Initializing /data/fluoview/Sample_ThreeCH.TIF:
[testng] [2024-09-16 01:39:52,970] [pool-1-thread-10] Initializing /data/iplab/Blend_DIC.IPL:
[testng] [2024-09-16 01:39:52,987] [pool-1-thread-4] Initializing /data/iplab/Chromosomes.IPL:
[testng] [2024-09-16 01:39:52,994] [pool-1-thread-2] Initializing /data/iplab/10x Blood and Bacteria.IPL:
[testng] [2024-09-16 01:39:53,005] [pool-1-thread-8] Initializing /data/iplab/Blend_Tritc.IPL:
[testng] [2024-09-16 01:39:53,015] [pool-1-thread-1] Initializing /data/iplab/16Bit XRay.IPL:
[testng] [2024-09-16 01:39:53,021] [pool-1-thread-11] Initializing /data/fluoview/Sample_TwoCH.TIF:
[testng] [2024-09-16 01:39:53,827] [pool-1-thread-1] Initializing /data/fluoview/sample_labled_XYZCh.tif:
[testng] [2024-09-16 01:39:53,869] [pool-1-thread-4] Initializing /data/iplab/Blend_Final.IPL:
[testng] [2024-09-16 01:39:53,932] [pool-1-thread-12] Initializing /data/fluoview/Sample_XT.tif:
[testng] [2024-09-16 01:39:54,228] [pool-1-thread-8] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm:
[testng] [2024-09-16 01:39:54,376] [pool-1-thread-6] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1484, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 42 seconds
Finished: SUCCESS