Started by upstream project "BIOFORMATS-test-repo" build number 190 originally caused by: Started by upstream project "Trigger" build number 212 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins13297761726244560899.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_30077_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:14:30,875 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:14:30,877 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:14:30,877 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:14:30,878 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:14:30,878 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:14:30,878 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:14:30,879 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:14:30,879 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:14:30,879 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:14:30,879 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:14:30,879 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:14:30,879 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:14:31,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:14:31,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:14:31,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:14:31,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:14:31,197 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:14:31,197 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:14:31,197 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:14:31,198 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:14:31,198 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:14:31,199 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:14:31,199 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 320 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-16 02:14:31,211] [main] java.version = 1.8.0_342 [testng] 02:14:31,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:14:31,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:14:31,272 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-16_02-14-31.log] [testng] 02:14:31,274 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-09-16 02:14:31,277] [main] testng.directory = /data [testng] [2024-09-16 02:14:31,277] [main] testng.configDirectory = /config [testng] [2024-09-16 02:14:31,293] [main] testng.multiplier = 1.0 [testng] [2024-09-16 02:14:31,293] [main] testng.in-memory = false [testng] [2024-09-16 02:14:31,293] [main] testng.allow-missing = false [testng] [2024-09-16 02:14:31,293] [main] user.language = fr [testng] [2024-09-16 02:14:31,293] [main] user.country = FR [testng] [2024-09-16 02:14:31,293] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-09-16 02:21:25,565] [main] ---------------------------------------- [testng] [2024-09-16 02:21:25,566] [main] Total files: 7329 [testng] [2024-09-16 02:21:25,566] [main] Scan time: 414.272 s (56 ms/file) [testng] [2024-09-16 02:21:25,567] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-16 02:24:29,033] [pool-1-thread-1] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] 02:24:29,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:24:29,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:29,035 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-16_02-24-29.log] [testng] 02:24:29,035 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21e1bd3c - End of configuration. [testng] [2024-09-16 02:24:32,388] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] 02:24:32,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:24:32,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:32,390 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-16_02-24-32.log] [testng] 02:24:32,390 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6be4cbc7 - End of configuration. [testng] [2024-09-16 02:24:32,479] [pool-1-thread-11] Initializing /data/josh/2101to400bstk.stk: [testng] 02:24:32,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:24:32,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:32,480 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-16_02-24-32.log] [testng] 02:24:32,481 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4029983b - End of configuration. [testng] [2024-09-16 02:24:41,455] [pool-1-thread-10] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] 02:24:41,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:24:41,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:41,457 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-16_02-24-41.log] [testng] 02:24:41,457 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30df710b - End of configuration. [testng] [2024-09-16 02:24:41,529] [pool-1-thread-9] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] 02:24:41,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:24:41,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:41,530 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-16_02-24-41.log] [testng] 02:24:41,530 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fa3dc65 - End of configuration. [testng] [2024-09-16 02:24:41,643] [pool-1-thread-8] Initializing /data/cumol-test-series/23.001: [testng] 02:24:41,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:24:41,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:41,644 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-16_02-24-41.log] [testng] 02:24:41,644 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ec15a7e - End of configuration. [testng] [2024-09-16 02:24:41,730] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] 02:24:41,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:24:41,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:41,731 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-16_02-24-41.log] [testng] 02:24:41,731 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a65a5ff - End of configuration. [testng] [2024-09-16 02:24:41,809] [pool-1-thread-7] Used files list does not include base file [testng] [2024-09-16 02:24:41,811] [pool-1-thread-6] Initializing /data/doil/001-23 dapi.stk: [testng] 02:24:41,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:24:41,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:41,812 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-16_02-24-41.log] [testng] 02:24:41,812 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1858868 - End of configuration. [testng] [2024-09-16 02:24:43,797] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] 02:24:43,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:24:43,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:43,798 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-16_02-24-43.log] [testng] 02:24:43,798 |-INFO in ch.qos.logback.core.sift.SiftProcessor@707a0953 - End of configuration. [testng] [2024-09-16 02:24:43,870] [pool-1-thread-4] Initializing /data/josh/2101to800.stk: [testng] 02:24:43,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:24:43,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:43,871 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-16_02-24-43.log] [testng] 02:24:43,871 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45da4684 - End of configuration. [testng] [2024-09-16 02:24:44,570] [pool-1-thread-3] Initializing /data/jerome/deconv.STK: [testng] 02:24:44,570 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:24:44,570 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:44,571 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-16_02-24-44.log] [testng] 02:24:44,572 |-INFO in ch.qos.logback.core.sift.SiftProcessor@615603bb - End of configuration. [testng] [2024-09-16 02:24:44,615] [pool-1-thread-2] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] 02:24:44,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:24:44,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:44,616 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-16_02-24-44.log] [testng] 02:24:44,616 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d97ef4f - End of configuration. [testng] [2024-09-16 02:24:46,363] [pool-1-thread-3] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-09-16 02:24:46,463] [pool-1-thread-9] Initializing /data/qa-16915/m-01.tif: [testng] [2024-09-16 02:24:47,056] [pool-1-thread-10] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-09-16 02:24:47,362] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-16 02:24:47,593] [pool-1-thread-8] Initializing /data/thomas/t_test2001.tif: [testng] [2024-09-16 02:24:47,678] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-09-16 02:24:48,162] [pool-1-thread-3] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-09-16 02:24:48,419] [pool-1-thread-2] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-09-16 02:24:48,885] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-09-16 02:24:49,082] [pool-1-thread-10] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-09-16 02:24:49,176] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-09-16 02:24:49,512] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-09-16 02:24:50,272] [pool-1-thread-12] Initializing /data/jae/RGB_s34.tif: [testng] [2024-09-16 02:24:50,362] [pool-1-thread-7] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-09-16 02:24:50,548] [pool-1-thread-5] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-09-16 02:24:51,287] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-09-16 02:24:51,434] [pool-1-thread-10] Initializing /data/david/tl4.tif: [testng] [2024-09-16 02:24:51,878] [pool-1-thread-9] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-09-16 02:24:51,996] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-09-16 02:24:52,328] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-09-16 02:24:52,418] [pool-1-thread-7] Used files list does not include base file [testng] [2024-09-16 02:24:53,287] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-09-16 02:24:53,507] [pool-1-thread-12] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-09-16 02:24:54,144] [pool-1-thread-5] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-09-16 02:24:54,721] [pool-1-thread-4] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-09-16 02:24:54,875] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-16 02:24:55,261] [pool-1-thread-5] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-09-16 02:24:56,149] [pool-1-thread-2] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-09-16 02:24:56,214] [pool-1-thread-4] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-09-16 02:24:56,324] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-09-16 02:24:56,413] [pool-1-thread-7] Used files list does not include base file [testng] [2024-09-16 02:24:57,070] [pool-1-thread-8] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-09-16 02:24:57,236] [pool-1-thread-2] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-09-16 02:24:57,337] [pool-1-thread-5] Initializing /data/grant/X.STK: [testng] [2024-09-16 02:24:58,456] [pool-1-thread-2] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-09-16 02:24:58,850] [pool-1-thread-10] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-09-16 02:24:59,346] [pool-1-thread-3] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-09-16 02:24:59,870] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-09-16 02:24:59,995] [pool-1-thread-8] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-09-16 02:25:00,930] [pool-1-thread-7] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-09-16 02:25:01,190] [pool-1-thread-10] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-09-16 02:25:01,261] [pool-1-thread-5] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-09-16 02:25:01,962] [pool-1-thread-8] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-09-16 02:25:02,728] [pool-1-thread-12] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-09-16 02:25:02,842] [pool-1-thread-5] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-09-16 02:25:02,992] [pool-1-thread-4] Initializing /data/samples/zseries.stk: [testng] [2024-09-16 02:25:03,467] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-09-16 02:25:03,533] [pool-1-thread-10] Used files list does not include base file [testng] [2024-09-16 02:25:03,551] [pool-1-thread-8] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-09-16 02:25:04,277] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-09-16 02:25:04,497] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-09-16 02:25:04,538] [pool-1-thread-3] Used files list does not include base file [testng] [2024-09-16 02:25:04,640] [pool-1-thread-5] Initializing /data/josh/2101to600astk.stk: [testng] [2024-09-16 02:25:14,211] [pool-1-thread-10] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-09-16 02:25:14,355] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-09-16 02:25:14,477] [pool-1-thread-3] Initializing /data/ascb/golgi marker.tif: [testng] [2024-09-16 02:25:14,550] [pool-1-thread-12] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-09-16 02:25:14,861] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-09-16 02:25:15,062] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-09-16 02:25:15,168] [pool-1-thread-10] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-09-16 02:25:16,288] [pool-1-thread-9] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-09-16 02:25:16,560] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-09-16 02:25:16,673] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-09-16 02:25:16,943] [pool-1-thread-10] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-09-16 02:25:17,302] [pool-1-thread-3] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-09-16 02:25:17,859] [pool-1-thread-12] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-09-16 02:25:18,117] [pool-1-thread-4] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-09-16 02:25:18,688] [pool-1-thread-12] Initializing /data/samples/diatoms3d.stk: [testng] [2024-09-16 02:25:18,918] [pool-1-thread-10] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-09-16 02:25:19,167] [pool-1-thread-3] Initializing 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DAPI.TIF: [testng] [2024-09-16 02:25:30,781] [pool-1-thread-7] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-09-16 02:25:32,347] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-09-16 02:25:32,446] [pool-1-thread-3] Used files list does not include base file [testng] [2024-09-16 02:25:32,867] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-09-16 02:25:32,926] [pool-1-thread-4] Used files list does not include base file [testng] [2024-09-16 02:25:33,564] [pool-1-thread-9] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-09-16 02:25:35,727] [pool-1-thread-9] Initializing /data/josh/2101to400astk.stk: [testng] [2024-09-16 02:25:38,454] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-09-16 02:25:38,683] [pool-1-thread-4] Initializing 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[pool-1-thread-2] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-09-16 02:25:42,839] [pool-1-thread-4] Initializing /data/qa-16915/m-02.tif: [testng] [2024-09-16 02:25:43,267] [pool-1-thread-6] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-09-16 02:25:43,344] [pool-1-thread-10] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-09-16 02:25:43,766] [pool-1-thread-7] Initializing /data/qa-16887/m-01.tif: [testng] [2024-09-16 02:25:44,637] [pool-1-thread-10] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-09-16 02:25:44,804] [pool-1-thread-3] Initializing /data/alex/Selected FITC.stk: [testng] [2024-09-16 02:25:45,663] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-09-16 02:25:45,741] [pool-1-thread-6] Used files list does not include base file [testng] [2024-09-16 02:25:45,843] [pool-1-thread-2] Initializing 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02:25:49,677] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-09-16 02:25:50,498] [pool-1-thread-6] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-16 02:25:50,866] [pool-1-thread-3] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-09-16 02:25:51,074] [pool-1-thread-2] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-09-16 02:25:52,026] [pool-1-thread-3] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-09-16 02:25:54,435] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-09-16 02:25:54,803] [pool-1-thread-8] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-09-16 02:25:54,886] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-09-16 02:25:54,957] [pool-1-thread-6] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-09-16 02:25:55,619] [pool-1-thread-8] Initializing /data/samples/zserSixteen.stk: [testng] [2024-09-16 02:25:56,119] [pool-1-thread-8] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-09-16 02:25:56,200] [pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-09-16 02:25:56,359] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-09-16 02:25:56,639] [pool-1-thread-4] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-09-16 02:25:57,361] [pool-1-thread-11] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-09-16 02:25:57,433] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-09-16 02:25:57,506] [pool-1-thread-10] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-09-16 02:25:57,716] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-09-16 02:25:57,800] [pool-1-thread-6] Used files list does not include base file [testng] [2024-09-16 02:25:58,160] [pool-1-thread-9] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-09-16 02:25:58,844] [pool-1-thread-2] Initializing /data/qa-16915/m-04.tif: [testng] [2024-09-16 02:25:59,975] [pool-1-thread-8] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-09-16 02:26:00,788] [pool-1-thread-7] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-09-16 02:26:00,895] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-09-16 02:26:02,382] [pool-1-thread-6] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-09-16 02:26:02,782] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-09-16 02:26:03,745] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-09-16 02:26:03,840] [pool-1-thread-7] Used files list does not include base file [testng] [2024-09-16 02:26:03,841] [pool-1-thread-2] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-09-16 02:26:03,973] [pool-1-thread-8] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-09-16 02:26:05,299] [pool-1-thread-6] Initializing /data/steve/Experiment2.stk: [testng] [2024-09-16 02:26:05,568] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-09-16 02:26:05,635] [pool-1-thread-8] Used files list does not include base file [testng] [2024-09-16 02:26:06,011] [pool-1-thread-6] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-09-16 02:26:06,160] [pool-1-thread-2] Initializing 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[2024-09-16 02:26:10,030] [pool-1-thread-7] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-09-16 02:26:10,312] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-09-16 02:26:10,351] [pool-1-thread-8] Used files list does not include base file [testng] [2024-09-16 02:26:12,298] [pool-1-thread-9] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-09-16 02:26:12,344] [pool-1-thread-8] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-09-16 02:26:13,189] [pool-1-thread-6] Initializing /data/samples/zser24.stk: [testng] [2024-09-16 02:26:13,250] [pool-1-thread-3] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-09-16 02:26:13,348] [pool-1-thread-2] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-09-16 02:26:13,427] [pool-1-thread-11] Initializing /data/josh/2101to600f.stk: [testng] [2024-09-16 02:26:16,246] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-09-16 02:26:16,826] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-09-16 02:26:16,893] [pool-1-thread-6] Used files list does not include base file [testng] [2024-09-16 02:26:16,949] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-09-16 02:26:17,563] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-16 02:26:17,941] [pool-1-thread-10] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-09-16 02:26:18,635] [pool-1-thread-3] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-09-16 02:26:18,756] [pool-1-thread-5] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-09-16 02:26:19,644] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-09-16 02:26:19,797] [pool-1-thread-5] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-09-16 02:26:20,077] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-09-16 02:26:20,922] [pool-1-thread-6] Initializing /data/samples/10xcalib.tif: [testng] [2024-09-16 02:26:20,976] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-09-16 02:26:22,091] [pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-16 02:26:22,361] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-09-16 02:26:22,393] [pool-1-thread-3] Used files list does not include base file [testng] [2024-09-16 02:26:22,469] [pool-1-thread-6] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-09-16 02:26:23,054] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-09-16 02:26:23,949] [pool-1-thread-2] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-09-16 02:26:24,133] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-09-16 02:26:24,353] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-09-16 02:26:24,691] [pool-1-thread-6] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-09-16 02:26:24,854] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-09-16 02:26:25,213] [pool-1-thread-2] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-09-16 02:26:25,408] [pool-1-thread-10] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-09-16 02:26:25,656] [pool-1-thread-3] Initializing /data/ascb/mt aim.tif: [testng] [2024-09-16 02:26:25,723] [pool-1-thread-10] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-09-16 02:26:28,271] [pool-1-thread-2] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-09-16 02:26:28,497] [pool-1-thread-5] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-09-16 02:26:29,059] [pool-1-thread-3] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-09-16 02:26:29,762] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-16 02:26:30,176] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-09-16 02:26:30,225] [pool-1-thread-9] Used files list does not include base file [testng] [2024-09-16 02:26:30,599] [pool-1-thread-5] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-09-16 02:26:31,049] [pool-1-thread-6] Initializing /data/josh/2101to600e.stk: [testng] [2024-09-16 02:26:31,810] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-09-16 02:26:32,072] [pool-1-thread-3] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-09-16 02:26:32,293] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-09-16 02:26:33,031] [pool-1-thread-2] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-09-16 02:26:33,382] [pool-1-thread-3] Initializing /data/samples/10xcalib.stk: [testng] [2024-09-16 02:26:33,430] [pool-1-thread-5] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-09-16 02:26:33,711] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-09-16 02:26:33,869] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-09-16 02:26:34,166] [pool-1-thread-3] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-09-16 02:26:34,944] [pool-1-thread-2] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-09-16 02:26:35,461] [pool-1-thread-3] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-09-16 02:26:35,594] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-09-16 02:26:35,683] [pool-1-thread-5] Used files list does not include base file [testng] [2024-09-16 02:26:35,841] [pool-1-thread-9] Initializing /data/jacek/YFP2trans.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 22 minutes 31 seconds Finished: SUCCESS