Started by upstream project "BIOFORMATS-test-repo" build number 190
originally caused by:
Started by upstream project "Trigger" build number 212
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins3106238318848156166.sh
+ '[' analyze = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_30105_merge_ci -v /uod/idr/repos/curated/analyze:/data -v /uod/idr-scratch/merge-ci/curated/analyze:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:34:38,321 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:34:38,323 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 02:34:38,323 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:34:38,324 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:34:38,324 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:34:38,324 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:34:38,325 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:34:38,325 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:34:38,325 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:34:38,326 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:34:38,326 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:34:38,326 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:34:38,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:34:38,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:34:38,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:34:38,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:34:38,611 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:34:38,611 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:34:38,611 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:34:38,612 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:34:38,612 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 02:34:38,613 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 02:34:38,613 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 288 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-09-16 02:34:38,624] [main] java.version = 1.8.0_342
[testng] 02:34:38,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:34:38,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:34:38,675 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-16_02-34-38.log]
[testng] 02:34:38,677 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-09-16 02:34:38,679] [main] testng.directory = /data
[testng] [2024-09-16 02:34:38,679] [main] testng.configDirectory = /config
[testng] [2024-09-16 02:34:38,692] [main] testng.multiplier = 1.0
[testng] [2024-09-16 02:34:38,692] [main] testng.in-memory = false
[testng] [2024-09-16 02:34:38,692] [main] testng.allow-missing = false
[testng] [2024-09-16 02:34:38,692] [main] user.language = fr
[testng] [2024-09-16 02:34:38,692] [main] user.country = FR
[testng] [2024-09-16 02:34:38,692] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-09-16 02:34:39,606] [main] ----------------------------------------
[testng] [2024-09-16 02:34:39,606] [main] Total files: 21
[testng] [2024-09-16 02:34:39,606] [main] Scan time: 0.914 s (43 ms/file)
[testng] [2024-09-16 02:34:39,607] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-09-16 02:34:41,574] [pool-1-thread-1] Initializing /data/frans/aal.hdr:
[testng] 02:34:41,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:34:41,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:34:41,575 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-16_02-34-41.log]
[testng] 02:34:41,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e3f32a2 - End of configuration.
[testng] [2024-09-16 02:34:41,634] [pool-1-thread-12] Initializing /data/frans/ch2.hdr:
[testng] 02:34:41,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:34:41,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:34:41,635 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-16_02-34-41.log]
[testng] 02:34:41,636 |-INFO in ch.qos.logback.core.sift.SiftProcessor@748d488b - End of configuration.
[testng] [2024-09-16 02:34:41,659] [pool-1-thread-11] Initializing /data/frans/betmask.hdr:
[testng] 02:34:41,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:34:41,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:34:41,660 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-16_02-34-41.log]
[testng] 02:34:41,660 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a4f5bba - End of configuration.
[testng] [2024-09-16 02:34:41,676] [pool-1-thread-10] Initializing /data/frans/Test Files for Frans/1002-sag-transform-box-est_flip-ord.hdr:
[testng] 02:34:41,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:34:41,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:34:41,677 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-16_02-34-41.log]
[testng] 02:34:41,677 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7571cc91 - End of configuration.
[testng] [2024-09-16 02:34:41,695] [pool-1-thread-9] Initializing /data/frans/Test Files for Frans/F005_1002_MF_SCAN1_stat_brain_fdg_JJ_Volume_Corrected.hdr:
[testng] 02:34:41,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:34:41,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:34:41,696 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-16_02-34-41.log]
[testng] 02:34:41,696 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14fdfdb1 - End of configuration.
[testng] [2024-09-16 02:34:41,714] [pool-1-thread-8] Initializing /data/frans/brodmann.hdr:
[testng] 02:34:41,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:34:41,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:34:41,715 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-16_02-34-41.log]
[testng] 02:34:41,715 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b93883b - End of configuration.
[testng] [2024-09-16 02:34:41,731] [pool-1-thread-7] Initializing /data/frans/MR_CHEST.hdr:
[testng] 02:34:41,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:34:41,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:34:41,732 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-16_02-34-41.log]
[testng] 02:34:41,733 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3207e1ac - End of configuration.
[testng] [2024-09-16 02:34:41,762] [pool-1-thread-6] Initializing /data/frans/CT_APERT.hdr:
[testng] 02:34:41,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:34:41,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:34:41,763 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-16_02-34-41.log]
[testng] 02:34:41,763 |-INFO in ch.qos.logback.core.sift.SiftProcessor@274d977d - End of configuration.
[testng] [2024-09-16 02:34:41,785] [pool-1-thread-5] Initializing /data/frans/Test Files for Frans/06-101-mask-40pc2dil.hdr:
[testng] 02:34:41,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:34:41,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:34:41,786 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-16_02-34-41.log]
[testng] 02:34:41,787 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22cbb6ac - End of configuration.
[testng] [2024-09-16 02:34:41,806] [pool-1-thread-4] Initializing /data/frans/CT_HAND.hdr:
[testng] 02:34:41,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:34:41,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:34:41,807 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-16_02-34-41.log]
[testng] 02:34:41,808 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71ef9c72 - End of configuration.
[testng] [2024-09-16 02:34:41,827] [pool-1-thread-3] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1.img.hdr:
[testng] 02:34:41,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:34:41,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:34:41,828 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-16_02-34-41.log]
[testng] 02:34:41,829 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c443043 - End of configuration.
[testng] [2024-09-16 02:34:41,865] [pool-1-thread-2] Initializing /data/frans/MR_SEGBRAIN.hdr:
[testng] 02:34:41,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:34:41,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:34:41,866 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-16_02-34-41.log]
[testng] 02:34:41,867 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50d824cc - End of configuration.
[testng] [2024-09-16 02:34:43,802] [pool-1-thread-11] Initializing /data/frans/CT_KNEE.hdr:
[testng] [2024-09-16 02:34:43,839] [pool-1-thread-2] Initializing /data/frans/m000-MR_CHEST.gif:
[testng] [2024-09-16 02:34:43,860] [pool-1-thread-7] Initializing /data/frans/CT_WHOLE.hdr:
[testng] [2024-09-16 02:34:43,888] [pool-1-thread-8] Initializing /data/frans/CT_CHEST.hdr:
[testng] [2024-09-16 02:34:43,905] [pool-1-thread-1] Initializing /data/frans/CT_CRANI.hdr:
[testng] [2024-09-16 02:34:43,921] [pool-1-thread-6] Initializing /data/frans/Test Files for Frans/PLA-zm2-16mm_1002_MF_V1.hdr:
[testng] [2024-09-16 02:34:43,936] [pool-1-thread-10] Initializing /data/frans/ch2bet.hdr:
[testng] [2024-09-16 02:34:43,952] [pool-1-thread-12] Initializing /data/frans/Test Files for Frans/200-PLA_sansBD_spmT_0005.hdr:
[testng] [2024-09-16 02:34:43,971] [pool-1-thread-4] Initializing /data/frans/CT_FOOT.hdr:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 9 seconds
Finished: SUCCESS