Started by upstream project "BIOFORMATS-test-repo" build number 24
originally caused by:
 Started by upstream project "Trigger" build number 27
 originally caused by:
  Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins12367712769319597621.sh
+ '[' leica-scn = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_3049_merge_ci -v /uod/idr/repos/curated/leica-scn:/data -v /uod/idr-scratch/merge-ci/curated/leica-scn:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 11:56:42,905 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 11:56:42,907 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
   [testng] 11:56:42,907 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 11:56:42,908 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 11:56:42,908 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 11:56:42,908 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 11:56:42,909 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 11:56:42,909 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 11:56:42,909 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 11:56:42,909 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 11:56:42,910 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 11:56:42,910 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 11:56:43,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 11:56:43,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 11:56:43,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 11:56:43,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 11:56:43,172 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 11:56:43,172 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 11:56:43,172 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 11:56:43,172 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 11:56:43,173 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
   [testng] 11:56:43,173 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
   [testng] 11:56:43,173 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 264 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-04-05 11:56:43,183] [main] java.version = 1.8.0_342
   [testng] 11:56:43,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 11:56:43,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:56:43,236 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-05_11-56-43.log]
   [testng] 11:56:43,239 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
   [testng] [2024-04-05 11:56:43,241] [main] testng.directory = /data
   [testng] [2024-04-05 11:56:43,242] [main] testng.configDirectory = /config
   [testng] [2024-04-05 11:56:43,254] [main] testng.multiplier = 1.0
   [testng] [2024-04-05 11:56:43,254] [main] testng.in-memory = false
   [testng] [2024-04-05 11:56:43,254] [main] testng.allow-missing = false
   [testng] [2024-04-05 11:56:43,254] [main] user.language = en
   [testng] [2024-04-05 11:56:43,254] [main] user.country = ${user.country}
   [testng] [2024-04-05 11:56:43,254] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-04-05 11:56:57,416] [main] ----------------------------------------
   [testng] [2024-04-05 11:56:57,416] [main] Total files: 12
   [testng] [2024-04-05 11:56:57,416] [main] Scan time: 14.161 s (1180 ms/file)
   [testng] [2024-04-05 11:56:57,416] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 12 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-04-05 11:56:59,067] [pool-1-thread-1] Initializing /data/scott/Oral_Biology_13 (1).scn: 
   [testng] 11:56:59,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 11:56:59,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:56:59,069 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-05_11-56-59.log]
   [testng] 11:56:59,070 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31893416 - End of configuration.
   [testng] [2024-04-05 11:56:59,317] [pool-1-thread-12] Initializing /data/scott/ImageCollection_0000000418_2010-10-27 13_31_31Z.scn: 
   [testng] 11:56:59,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 11:56:59,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:56:59,318 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-05_11-56-59.log]
   [testng] 11:56:59,319 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e459b18 - End of configuration.
   [testng] [2024-04-05 11:56:59,406] [pool-1-thread-11] Initializing /data/michael/collection_0000008286_2012-05-23 17_20_46 opened usig LOCI.tif: 
   [testng] 11:56:59,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 11:56:59,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:56:59,407 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-05_11-56-59.log]
   [testng] 11:56:59,408 |-INFO in ch.qos.logback.core.sift.SiftProcessor@146da5b7 - End of configuration.
   [testng] [2024-04-05 11:56:59,485] [pool-1-thread-10] Initializing /data/public/openslide/Leica-3/Leica-3.scn: 
   [testng] 11:56:59,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 11:56:59,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:56:59,487 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-05_11-56-59.log]
   [testng] 11:56:59,487 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e47c35d - End of configuration.
   [testng] [2024-04-05 11:56:59,602] [pool-1-thread-9] Initializing /data/michael/collection_0000008286_2012-05-23 17_20_46.scn: 
   [testng] 11:56:59,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 11:56:59,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:56:59,603 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-05_11-56-59.log]
   [testng] 11:56:59,603 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ecf0cc - End of configuration.
   [testng] [2024-04-05 11:56:59,741] [pool-1-thread-8] Initializing /data/qa-17671/132223-12_022a1963-b32e-467f-8242-b51a5295951f.SCN: 
   [testng] 11:56:59,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 11:56:59,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:56:59,742 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-05_11-56-59.log]
   [testng] 11:56:59,742 |-INFO in ch.qos.logback.core.sift.SiftProcessor@646ecfb5 - End of configuration.
   [testng] [2024-04-05 11:56:59,810] [pool-1-thread-7] Initializing /data/mihaela/UCLAD_0000000280_2011-02-10 13_32_55Z.scn: 
   [testng] 11:56:59,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 11:56:59,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:56:59,811 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-05_11-56-59.log]
   [testng] 11:56:59,812 |-INFO in ch.qos.logback.core.sift.SiftProcessor@165dfca9 - End of configuration.
   [testng] [2024-04-05 11:56:59,881] [pool-1-thread-6] Initializing /data/qa-11049/HP15.4994_2015-04-28.scn: 
   [testng] 11:56:59,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 11:56:59,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:56:59,882 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-05_11-56-59.log]
   [testng] 11:56:59,882 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b1a94b3 - End of configuration.
   [testng] [2024-04-05 11:57:00,077] [pool-1-thread-5] Initializing /data/public/openslide/Leica-2/Leica-2.scn: 
   [testng] 11:57:00,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 11:57:00,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:57:00,078 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-05_11-57-00.log]
   [testng] 11:57:00,078 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c9788b4 - End of configuration.
   [testng] [2024-04-05 11:57:00,199] [pool-1-thread-4] Initializing /data/qa-10469/Slide_907790L_DAPI_Ki67.scn: 
   [testng] 11:57:00,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 11:57:00,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:57:00,201 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-05_11-57-00.log]
   [testng] 11:57:00,202 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28643bb1 - End of configuration.
   [testng] [2024-04-05 11:57:00,621] [pool-1-thread-3] Initializing /data/michael/collection_0000008286_2012-05-23 17_20_46 fullresolution.jpg: 
   [testng] 11:57:00,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 11:57:00,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:57:00,622 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-05_11-57-00.log]
   [testng] 11:57:00,623 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3209ac16 - End of configuration.
   [testng] [2024-04-05 11:57:00,788] [pool-1-thread-2] Initializing /data/public/openslide/Leica-1/Leica-1.scn: 
   [testng] 11:57:00,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 11:57:00,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:57:00,789 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-05_11-57-00.log]
   [testng] 11:57:00,789 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b615829 - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 636, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 1 minute 34 seconds
Finished: SUCCESS