Started by upstream project "BIOFORMATS-test-repo" build number 194 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins81917739729629452.sh + '[' mrw = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_30743_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 13:07:21,797 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 13:07:21,798 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 13:07:21,798 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 13:07:21,799 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 13:07:21,800 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 13:07:21,800 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 13:07:21,800 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 13:07:21,800 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 13:07:21,801 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 13:07:21,801 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 13:07:21,802 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 13:07:21,802 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 13:07:21,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 13:07:21,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 13:07:21,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 13:07:21,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 13:07:21,990 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 13:07:21,990 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 13:07:21,990 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 13:07:21,991 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 13:07:21,991 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 13:07:21,991 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 13:07:21,991 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 190 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-19 13:07:22,000] [main] java.version = 21 [testng] 13:07:22,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 13:07:22,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:07:22,045 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-19_13-07-22.log] [testng] 13:07:22,046 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-09-19 13:07:22,048] [main] testng.directory = /data [testng] [2024-09-19 13:07:22,048] [main] testng.configDirectory = /config [testng] [2024-09-19 13:07:22,057] [main] testng.multiplier = 1.0 [testng] [2024-09-19 13:07:22,058] [main] testng.in-memory = false [testng] [2024-09-19 13:07:22,058] [main] testng.allow-missing = false [testng] [2024-09-19 13:07:22,058] [main] user.language = en [testng] [2024-09-19 13:07:22,058] [main] user.country = ${user.country} [testng] [2024-09-19 13:07:22,058] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-19 13:07:23,273] [main] ---------------------------------------- [testng] [2024-09-19 13:07:23,273] [main] Total files: 19 [testng] [2024-09-19 13:07:23,274] [main] Scan time: 1.215 s (63 ms/file) [testng] [2024-09-19 13:07:23,274] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 19 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-19 13:07:36,780] [pool-1-thread-1] Initializing /data/samples/400R PICT0003.MRW: [testng] 13:07:36,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 13:07:36,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:07:36,782 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-19_13-07-36.log] [testng] 13:07:36,782 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a577606 - End of configuration. [testng] [2024-09-19 13:07:37,621] [pool-1-thread-12] Initializing /data/samples/05-Aug-21_duperele_0353.mrw: [testng] 13:07:37,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 13:07:37,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:07:37,622 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-19_13-07-37.log] [testng] 13:07:37,623 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f6a066a - End of configuration. [testng] [2024-09-19 13:07:38,496] [pool-1-thread-11] Initializing /data/samples/05-Sep-03_duperele_0472.mrw: [testng] 13:07:38,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 13:07:38,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:07:38,497 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-19_13-07-38.log] [testng] 13:07:38,497 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5544db0d - End of configuration. [testng] [2024-09-19 13:07:39,404] [pool-1-thread-10] Initializing /data/samples/05-Sep-14_sigma_0698.mrw: [testng] 13:07:39,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 13:07:39,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:07:39,405 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-19_13-07-39.log] [testng] 13:07:39,405 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3009379e - End of configuration. [testng] [2024-09-19 13:07:40,211] [pool-1-thread-9] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw: [testng] 13:07:40,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 13:07:40,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:07:40,212 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-19_13-07-40.log] [testng] 13:07:40,213 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b0af725 - End of configuration. [testng] [2024-09-19 13:07:41,010] [pool-1-thread-8] Initializing /data/samples/05-Sep-22_statua_0800.mrw: [testng] 13:07:41,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 13:07:41,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:07:41,011 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-19_13-07-41.log] [testng] 13:07:41,011 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39103b8a - End of configuration. [testng] [2024-09-19 13:07:41,914] [pool-1-thread-7] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw: [testng] 13:07:41,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 13:07:41,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:07:41,915 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-19_13-07-41.log] [testng] 13:07:41,915 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58964a50 - End of configuration. [testng] [2024-09-19 13:07:42,847] [pool-1-thread-6] Initializing /data/samples/200R PICT0002.MRW: [testng] 13:07:42,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 13:07:42,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:07:42,849 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-19_13-07-42.log] [testng] 13:07:42,849 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10b5e7be - End of configuration. [testng] [2024-09-19 13:07:43,813] [pool-1-thread-5] Initializing /data/samples/3200R PICT0006.MRW: [testng] 13:07:43,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 13:07:43,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:07:43,814 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-19_13-07-43.log] [testng] 13:07:43,814 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e7453fd - End of configuration. [testng] [2024-09-19 13:07:44,821] [pool-1-thread-4] Initializing /data/samples/05-Sep-22_statua_0837.mrw: [testng] 13:07:44,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 13:07:44,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:07:44,822 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-19_13-07-44.log] [testng] 13:07:44,822 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d1d239e - End of configuration. [testng] [2024-09-19 13:07:45,778] [pool-1-thread-3] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw: [testng] 13:07:45,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 13:07:45,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:07:45,779 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-19_13-07-45.log] [testng] 13:07:45,780 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b282356 - End of configuration. [testng] [2024-09-19 13:07:46,641] [pool-1-thread-2] Initializing /data/samples/800R PICT0010.MRW: [testng] 13:07:46,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 13:07:46,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:07:46,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-19_13-07-46.log] [testng] 13:07:46,643 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bcb1231 - End of configuration. [testng] [2024-09-19 13:07:57,485] [pool-1-thread-12] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw: [testng] [2024-09-19 13:07:58,162] [pool-1-thread-1] Initializing /data/samples/100R PICT0001.MRW: [testng] [2024-09-19 13:07:58,875] [pool-1-thread-2] Initializing /data/samples/05-Sep-22_statua_0818.mrw: [testng] [2024-09-19 13:07:59,566] [pool-1-thread-4] Initializing /data/samples/1600R PICT0005.MRW: [testng] [2024-09-19 13:08:00,261] [pool-1-thread-9] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw: [testng] [2024-09-19 13:08:00,971] [pool-1-thread-7] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw: [testng] [2024-09-19 13:08:01,662] [pool-1-thread-3] Initializing /data/samples/05-Sep-07_nyc_0531.mrw: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1007, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 51 seconds Finished: SUCCESS