Started by upstream project "BIOFORMATS-test-repo" build number 194 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins748459668026187960.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_30804_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 15:29:35,819 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 15:29:35,820 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 15:29:35,820 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 15:29:35,821 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 15:29:35,822 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 15:29:35,822 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 15:29:35,822 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 15:29:35,822 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 15:29:35,823 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 15:29:35,823 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 15:29:35,824 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 15:29:35,824 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 15:29:35,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 15:29:35,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 15:29:36,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 15:29:36,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 15:29:36,022 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 15:29:36,022 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 15:29:36,022 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 15:29:36,022 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 15:29:36,022 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 15:29:36,023 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 15:29:36,023 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 200 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-19 15:29:36,032] [main] java.version = 21 [testng] 15:29:36,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 15:29:36,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:29:36,077 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-19_15-29-36.log] [testng] 15:29:36,079 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-09-19 15:29:36,081] [main] testng.directory = /data [testng] [2024-09-19 15:29:36,081] [main] testng.configDirectory = /config [testng] [2024-09-19 15:29:36,089] [main] testng.multiplier = 1.0 [testng] [2024-09-19 15:29:36,090] [main] testng.in-memory = false [testng] [2024-09-19 15:29:36,090] [main] testng.allow-missing = false [testng] [2024-09-19 15:29:36,090] [main] user.language = en [testng] [2024-09-19 15:29:36,090] [main] user.country = ${user.country} [testng] [2024-09-19 15:29:36,090] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-19 15:29:54,030] [main] ---------------------------------------- [testng] [2024-09-19 15:29:54,030] [main] Total files: 31 [testng] [2024-09-19 15:29:54,030] [main] Scan time: 17.94 s (578 ms/file) [testng] [2024-09-19 15:29:54,030] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-19 15:30:15,981] [pool-1-thread-1] Initializing /data/venu/Multichannel 3.jp2: [testng] 15:30:15,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 15:30:15,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:30:15,983 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-19_15-30-15.log] [testng] 15:30:15,984 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f7dbaf6 - End of configuration. [testng] [2024-09-19 15:30:16,732] [pool-1-thread-12] Initializing /data/vikram/Captured 4.jp2: [testng] 15:30:16,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 15:30:16,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:30:16,734 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-19_15-30-16.log] [testng] 15:30:16,734 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60bac8d9 - End of configuration. [testng] [2024-09-19 15:30:17,345] [pool-1-thread-11] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] 15:30:17,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 15:30:17,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:30:17,346 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-19_15-30-17.log] [testng] 15:30:17,347 |-INFO in ch.qos.logback.core.sift.SiftProcessor@184fd4b0 - End of configuration. [testng] [2024-09-19 15:30:18,830] [pool-1-thread-10] Initializing /data/david/cy5-tph.jp2: [testng] 15:30:18,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 15:30:18,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:30:18,831 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-19_15-30-18.log] [testng] 15:30:18,831 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72a76891 - End of configuration. [testng] [2024-09-19 15:30:19,440] [pool-1-thread-9] Initializing /data/aryeh/flour 12.jp2: [testng] 15:30:19,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 15:30:19,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:30:19,441 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-19_15-30-19.log] [testng] 15:30:19,442 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d6a5c95 - End of configuration. [testng] [2024-09-19 15:30:20,112] [pool-1-thread-8] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] 15:30:20,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 15:30:20,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:30:20,113 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-19_15-30-20.log] [testng] 15:30:20,114 |-INFO in ch.qos.logback.core.sift.SiftProcessor@661d39bb - End of configuration. [testng] [2024-09-19 15:30:21,027] [pool-1-thread-7] Initializing /data/david/000000_000001.jpx: [testng] 15:30:21,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 15:30:21,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:30:21,029 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-19_15-30-21.log] [testng] 15:30:21,029 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cf4dc5c - End of configuration. [testng] [2024-09-19 15:30:21,568] [pool-1-thread-6] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] 15:30:21,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 15:30:21,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:30:21,570 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-19_15-30-21.log] [testng] 15:30:21,571 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c29bca1 - End of configuration. [testng] [2024-09-19 15:30:22,101] [pool-1-thread-5] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] 15:30:22,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 15:30:22,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:30:22,102 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-19_15-30-22.log] [testng] 15:30:22,102 |-INFO in ch.qos.logback.core.sift.SiftProcessor@683c58a0 - End of configuration. [testng] [2024-09-19 15:30:22,606] [pool-1-thread-4] Initializing /data/big-images/2kx2k.jpf: [testng] 15:30:22,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 15:30:22,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:30:22,607 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-19_15-30-22.log] [testng] 15:30:22,608 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2190d33f - End of configuration. [testng] [2024-09-19 15:30:23,114] [pool-1-thread-3] Initializing /data/vikram/Captured 1.jp2: [testng] 15:30:23,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 15:30:23,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:30:23,115 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-19_15-30-23.log] [testng] 15:30:23,116 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d1eafe1 - End of configuration. [testng] [2024-09-19 15:30:23,652] [pool-1-thread-2] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] 15:30:23,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 15:30:23,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:30:23,653 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-19_15-30-23.log] [testng] 15:30:23,653 |-INFO in ch.qos.logback.core.sift.SiftProcessor@771e2ed7 - End of configuration. [testng] [2024-09-19 15:30:28,625] [pool-1-thread-3] Initializing /data/big-images/8kx8k.jpf: [testng] [2024-09-19 15:30:29,108] [pool-1-thread-12] Initializing /data/frans/flower.jp2: [testng] [2024-09-19 15:30:29,652] [pool-1-thread-9] Initializing /data/vikram/Captured 5.jp2: [testng] [2024-09-19 15:30:31,801] [pool-1-thread-11] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] [2024-09-19 15:30:32,702] [pool-1-thread-6] Initializing /data/vikram/Captured 3.jp2: [testng] [2024-09-19 15:30:33,976] [pool-1-thread-5] Initializing /data/big-images/4kx4k.jpf: [testng] [2024-09-19 15:30:34,590] [pool-1-thread-7] Initializing /data/david/C1R1_FOS.jp2: [testng] [2024-09-19 15:30:35,904] [pool-1-thread-9] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] [2024-09-19 15:30:38,023] [pool-1-thread-6] Initializing /data/kraig/head.jp2: [testng] [2024-09-19 15:30:38,672] [pool-1-thread-1] Initializing /data/vikram/Captured 2.jp2: [testng] [2024-09-19 15:30:39,242] [pool-1-thread-4] Initializing /data/venu/Multichannel 3a.jpg: [testng] [2024-09-19 15:30:42,768] [pool-1-thread-4] Initializing /data/misc/clown-rgb.jpc: [testng] [2024-09-19 15:30:43,427] [pool-1-thread-1] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] [2024-09-19 15:30:44,759] [pool-1-thread-2] Initializing /data/david/multichannel-2d test.jp2: [testng] [2024-09-19 15:30:45,271] [pool-1-thread-6] Initializing /data/misc/clown-rgb.jp2: [testng] [2024-09-19 15:30:49,208] [pool-1-thread-4] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] [2024-09-19 15:30:49,918] [pool-1-thread-6] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] [2024-09-19 15:30:52,162] [pool-1-thread-1] Initializing /data/misc/clown-rgb.jbig: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 50 seconds Finished: SUCCESS