Started by upstream project "BIOFORMATS-test-repo" build number 197
originally caused by:
Started by upstream project "Trigger" build number 221
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins14516631308580204435.sh
+ '[' cellomics = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_31244_merge_ci -v /test/idr/repos/curated/cellomics:/data -v /test/idr-scratch/merge-ci/curated/cellomics:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:53:52,560 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:53:52,564 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 02:53:52,564 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:53:52,566 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:53:52,566 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:53:52,566 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:53:52,567 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:53:52,567 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:53:52,568 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:53:52,568 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:53:52,569 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:53:52,569 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:53:52,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:53:52,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:53:52,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:53:52,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:53:52,913 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:53:52,913 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:53:52,913 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:53:52,914 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:53:52,914 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 02:53:52,915 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 02:53:52,915 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 347 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-09-23 02:53:52,925] [main] java.version = 1.8.0_342
[testng] 02:53:52,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:53:52,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:53:52,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-23_02-53-52.log]
[testng] 02:53:52,990 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-09-23 02:53:52,993] [main] testng.directory = /data
[testng] [2024-09-23 02:53:52,993] [main] testng.configDirectory = /config
[testng] [2024-09-23 02:53:53,006] [main] testng.multiplier = 1.0
[testng] [2024-09-23 02:53:53,007] [main] testng.in-memory = false
[testng] [2024-09-23 02:53:53,007] [main] testng.allow-missing = false
[testng] [2024-09-23 02:53:53,007] [main] user.language = fr
[testng] [2024-09-23 02:53:53,007] [main] user.country = FR
[testng] [2024-09-23 02:53:53,007] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-09-23 02:54:02,138] [main] ----------------------------------------
[testng] [2024-09-23 02:54:02,138] [main] Total files: 2539
[testng] [2024-09-23 02:54:02,138] [main] Scan time: 9.131 s (3 ms/file)
[testng] [2024-09-23 02:54:02,138] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 17 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-09-23 02:54:04,306] [pool-1-thread-1] Initializing /data/omar/FB03f00d1.C01:
[testng] 02:54:04,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:54:04,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:54:04,307 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-23_02-54-04.log]
[testng] 02:54:04,308 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4310a117 - End of configuration.
[testng] [2024-09-23 02:54:04,370] [pool-1-thread-12] Initializing /data/johannes/MFGTMP_081222130005_E07f00d0.C01:
[testng] 02:54:04,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:54:04,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:54:04,372 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-23_02-54-04.log]
[testng] 02:54:04,372 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ba65cb9 - End of configuration.
[testng] [2024-09-23 02:54:04,398] [pool-1-thread-11] Initializing /data/johannes/MFGTMP_081128200001_A02f239d1.C01:
[testng] 02:54:04,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:54:04,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:54:04,399 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-23_02-54-04.log]
[testng] 02:54:04,399 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4dd892e8 - End of configuration.
[testng] [2024-09-23 02:54:04,437] [pool-1-thread-10] Initializing /data/lee/AS_09125_050116030001_D03f00d0.DIB:
[testng] 02:54:04,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:54:04,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:54:04,438 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-23_02-54-04.log]
[testng] 02:54:04,438 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2936a74 - End of configuration.
[testng] [2024-09-23 02:54:04,452] [pool-1-thread-9] Initializing /data/qa-21720/AS_09125_050117190001_A14f00d0.DIB:
[testng] 02:54:04,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:54:04,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:54:04,453 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-23_02-54-04.log]
[testng] 02:54:04,453 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b7eaad6 - End of configuration.
[testng] [2024-09-23 02:54:04,466] [pool-1-thread-8] Initializing /data/omar/FB03f00d0.C01:
[testng] 02:54:04,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:54:04,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:54:04,467 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-23_02-54-04.log]
[testng] 02:54:04,468 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c5d7191 - End of configuration.
[testng] [2024-09-23 02:54:04,505] [pool-1-thread-7] Initializing /data/qa-7352/test/MFGTMP-PC_130509120002_B02f00d0.C01:
[testng] 02:54:04,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:54:04,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:54:04,507 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-23_02-54-04.log]
[testng] 02:54:04,507 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40dff2a5 - End of configuration.
[testng] [2024-09-23 02:54:04,707] [pool-1-thread-6] Initializing /data/lee/icd002235_090127090001_a01f00d1.c01:
[testng] 02:54:04,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:54:04,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:54:04,708 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-23_02-54-04.log]
[testng] 02:54:04,709 |-INFO in ch.qos.logback.core.sift.SiftProcessor@420ac9ee - End of configuration.
[testng] [2024-09-23 02:54:04,726] [pool-1-thread-5] Initializing /data/harri/MFGTMP-PC_111018140003/MFGTMP-PC_111018140003_E04f00d0.C01:
[testng] 02:54:04,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:54:04,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:54:04,727 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-23_02-54-04.log]
[testng] 02:54:04,728 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18b516c3 - End of configuration.
[testng] [2024-09-23 02:54:04,853] [pool-1-thread-4] Initializing /data/omar/FB03f03o2.DIB:
[testng] 02:54:04,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:54:04,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:54:04,854 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-23_02-54-04.log]
[testng] 02:54:04,854 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11d444e2 - End of configuration.
[testng] [2024-09-23 02:54:04,872] [pool-1-thread-3] Initializing /data/samples/plate-size/plate_B03f00d0.C01:
[testng] 02:54:04,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:54:04,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:54:04,873 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-23_02-54-04.log]
[testng] 02:54:04,874 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b02a6a - End of configuration.
[testng] [2024-09-23 02:54:05,010] [pool-1-thread-2] Initializing /data/samples/sparse-plate/plate_E03f00d0.C01:
[testng] 02:54:05,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:54:05,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:54:05,011 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-23_02-54-05.log]
[testng] 02:54:05,011 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56d064 - End of configuration.
[testng] [2024-09-23 02:54:06,813] [pool-1-thread-10] Initializing /data/samples/different-field-count/plate_B03f00d0.C01:
[testng] [2024-09-23 02:54:06,865] [pool-1-thread-9] Initializing /data/qa-7352/test/MFGTMP-PC_130509120002_B02f00o1.C01:
[testng] [2024-09-23 02:54:06,965] [pool-1-thread-4] Initializing /data/public/BBBC001/AS_09125_050118150001_A03f00d0.DIB:
[testng] [2024-09-23 02:54:06,979] [pool-1-thread-11] Initializing /data/omar/FB03f00o1.C01:
[testng] [2024-09-23 02:54:06,994] [pool-1-thread-8] Initializing /data/omar/FB03f00o2.C01:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 901, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 4 minutes 44 seconds
Finished: SUCCESS