Started by upstream project "BIOFORMATS-test-repo" build number 198 originally caused by: Started by upstream project "Trigger" build number 222 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins5103333696697987069.sh + '[' specs = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_31331_merge_ci -v /test/idr/repos/curated/specs:/data -v /test/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:48:27,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:48:27,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:48:28,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:48:28,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:48:28,044 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:48:28,044 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:48:28,044 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:48:28,045 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:48:28,045 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@41a0aa7d - End of configuration. [testng] 01:48:28,047 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6574a52c - Registering current configuration as safe fallback point [testng] 01:48:28,047 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c1a5b54 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 437 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-24 01:48:28,063] [main] java.version = 11.0.16 [testng] 01:48:28,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:48:28,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:48:28,268 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-24_01-48-28.log] [testng] 01:48:28,271 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-09-24 01:48:28,275] [main] testng.directory = /data [testng] [2024-09-24 01:48:28,278] [main] testng.configDirectory = /config [testng] [2024-09-24 01:48:28,316] [main] testng.multiplier = 1.0 [testng] [2024-09-24 01:48:28,332] [main] testng.in-memory = false [testng] [2024-09-24 01:48:28,333] [main] testng.allow-missing = false [testng] [2024-09-24 01:48:28,333] [main] user.language = en [testng] [2024-09-24 01:48:28,333] [main] user.country = ${user.country} [testng] [2024-09-24 01:48:28,333] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-24 01:48:42,379] [main] ---------------------------------------- [testng] [2024-09-24 01:48:42,380] [main] Total files: 226 [testng] [2024-09-24 01:48:42,380] [main] Scan time: 14.046 s (62 ms/file) [testng] [2024-09-24 01:48:42,380] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-24 01:48:48,432] [pool-1-thread-1] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] 01:48:48,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:48:48,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:48:48,435 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-24_01-48-48.log] [testng] 01:48:48,436 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d68f94c - End of configuration. [testng] [2024-09-24 01:48:48,513] [pool-1-thread-12] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] 01:48:48,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:48:48,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:48:48,515 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-24_01-48-48.log] [testng] 01:48:48,516 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50e9e934 - End of configuration. [testng] [2024-09-24 01:48:48,607] [pool-1-thread-11] Initializing /data/iplab/Color Image.IPL: [testng] 01:48:48,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:48:48,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:48:48,610 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-24_01-48-48.log] [testng] 01:48:48,611 |-INFO in ch.qos.logback.core.sift.SiftProcessor@538366a3 - End of configuration. [testng] [2024-09-24 01:48:48,629] [pool-1-thread-10] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] 01:48:48,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:48:48,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:48:48,631 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-24_01-48-48.log] [testng] 01:48:48,632 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1190531a - End of configuration. [testng] [2024-09-24 01:48:48,650] [pool-1-thread-9] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] 01:48:48,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:48:48,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:48:48,652 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-24_01-48-48.log] [testng] 01:48:48,653 |-INFO in ch.qos.logback.core.sift.SiftProcessor@543ab3f - End of configuration. [testng] [2024-09-24 01:48:48,671] [pool-1-thread-8] Initializing /data/iplab/Actin.IPL: [testng] 01:48:48,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:48:48,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:48:48,672 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-24_01-48-48.log] [testng] 01:48:48,672 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d3f9a20 - End of configuration. [testng] [2024-09-24 01:48:48,679] [pool-1-thread-7] Initializing /data/iplab/Chromosomes.IPL: [testng] 01:48:48,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:48:48,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:48:48,681 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-24_01-48-48.log] [testng] 01:48:48,681 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dc9bf62 - End of configuration. [testng] [2024-09-24 01:48:48,691] [pool-1-thread-6] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] 01:48:48,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:48:48,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:48:48,693 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-24_01-48-48.log] [testng] 01:48:48,694 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7996bb6b - End of configuration. [testng] [2024-09-24 01:48:48,735] [pool-1-thread-5] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] 01:48:48,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:48:48,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:48:48,736 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-24_01-48-48.log] [testng] 01:48:48,737 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36624c87 - End of configuration. [testng] [2024-09-24 01:48:48,762] [pool-1-thread-4] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] 01:48:48,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:48:48,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:48:48,763 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-24_01-48-48.log] [testng] 01:48:48,763 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59876de5 - End of configuration. [testng] [2024-09-24 01:48:48,846] [pool-1-thread-3] Initializing /data/iplab/Color Histology.IPL: [testng] 01:48:48,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:48:48,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:48:48,847 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-24_01-48-48.log] [testng] 01:48:48,847 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60710840 - End of configuration. [testng] [2024-09-24 01:48:48,855] [pool-1-thread-2] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] 01:48:48,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:48:48,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:48:48,856 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-24_01-48-48.log] [testng] 01:48:48,856 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48ef9df7 - End of configuration. [testng] [2024-09-24 01:48:50,822] [pool-1-thread-11] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] [2024-09-24 01:48:50,896] [pool-1-thread-3] Initializing /data/fluoview/Sample_XT.tif: [testng] [2024-09-24 01:48:50,929] [pool-1-thread-8] Initializing /data/fluoview/Sample_XYT.TIF: [testng] [2024-09-24 01:48:50,958] [pool-1-thread-10] Initializing /data/fluoview/SpineAnimation.tif: [testng] [2024-09-24 01:48:50,986] [pool-1-thread-7] Initializing /data/iplab/Blend_Tritc.IPL: [testng] [2024-09-24 01:48:50,992] [pool-1-thread-9] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] [2024-09-24 01:48:51,013] [pool-1-thread-5] Initializing /data/iplab/Blend_DIC.IPL: [testng] [2024-09-24 01:48:51,021] [pool-1-thread-2] Initializing /data/fluoview/SpineAnimation.avi: [testng] [2024-09-24 01:48:51,035] [pool-1-thread-1] Initializing /data/iplab/16Bit XRay.IPL: [testng] [2024-09-24 01:48:51,043] [pool-1-thread-6] Initializing /data/iplab/Blend_Final.IPL: [testng] [2024-09-24 01:48:51,404] [pool-1-thread-1] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] [2024-09-24 01:48:51,562] [pool-1-thread-6] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] [2024-09-24 01:48:51,669] [pool-1-thread-7] Initializing /data/iplab/Blend_Fitc.IPL: [testng] [2024-09-24 01:48:51,880] [pool-1-thread-5] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] [2024-09-24 01:48:51,889] [pool-1-thread-9] Initializing /data/iplab/Blend_Dapi.IPL: [testng] [2024-09-24 01:48:52,030] [pool-1-thread-6] Initializing /data/iplab/3t3 Cell.IPL: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 32 seconds Finished: SUCCESS