Started by upstream project "BIOFORMATS-test-repo" build number 198
originally caused by:
Started by upstream project "Trigger" build number 222
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins8904553886525173453.sh
+ '[' ariol = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_31356_merge_ci -v /test/idr/repos/curated/ariol:/data -v /test/idr-scratch/merge-ci/curated/ariol:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 01:57:48,127 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:57:48,129 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
[testng] 01:57:48,129 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:57:48,130 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:57:48,131 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:57:48,131 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:57:48,132 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:57:48,132 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:57:48,132 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:57:48,133 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:57:48,133 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:57:48,134 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:57:48,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:57:48,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:57:48,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:57:48,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:57:48,439 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:57:48,440 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:57:48,440 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:57:48,440 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:57:48,440 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
[testng] 01:57:48,441 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
[testng] 01:57:48,441 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 309 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-09-24 01:57:48,453] [main] java.version = 11.0.16
[testng] 01:57:48,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:57:48,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:57:48,510 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-24_01-57-48.log]
[testng] 01:57:48,512 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-09-24 01:57:48,516] [main] testng.directory = /data
[testng] [2024-09-24 01:57:48,516] [main] testng.configDirectory = /config
[testng] [2024-09-24 01:57:48,534] [main] testng.multiplier = 1.0
[testng] [2024-09-24 01:57:48,536] [main] testng.in-memory = false
[testng] [2024-09-24 01:57:48,537] [main] testng.allow-missing = false
[testng] [2024-09-24 01:57:48,537] [main] user.language = en
[testng] [2024-09-24 01:57:48,537] [main] user.country = ${user.country}
[testng] [2024-09-24 01:57:48,537] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-09-24 01:57:50,060] [main] ----------------------------------------
[testng] [2024-09-24 01:57:50,060] [main] Total files: 33
[testng] [2024-09-24 01:57:50,060] [main] Scan time: 1.523 s (46 ms/file)
[testng] [2024-09-24 01:57:50,060] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 26 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-09-24 01:57:53,802] [pool-1-thread-1] Initializing /data/karen/E8E773C3-C86B-4457-9D2E-2DFB91EF1714.jpg:
[testng] 01:57:53,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:57:53,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:57:53,805 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-24_01-57-53.log]
[testng] 01:57:53,806 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23d11cf5 - End of configuration.
[testng] [2024-09-24 01:57:53,881] [pool-1-thread-12] Initializing /data/karen/612E1340-B118-425D-9B59-FD7860AA2B8F.jpg:
[testng] 01:57:53,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:57:53,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:57:53,898 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-24_01-57-53.log]
[testng] 01:57:53,899 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20b3b008 - End of configuration.
[testng] [2024-09-24 01:57:54,166] [pool-1-thread-11] Initializing /data/karen/26D1C9F6-07D0-4D5F-BD3F-1B7ECB1CB011.jpg:
[testng] 01:57:54,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:57:54,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:57:54,169 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-24_01-57-54.log]
[testng] 01:57:54,170 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e00f3cb - End of configuration.
[testng] [2024-09-24 01:57:54,319] [pool-1-thread-10] Initializing /data/karen/CBC73B29-94B4-44E8-BFCD-FC7CE4CF8109.jpg:
[testng] 01:57:54,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:57:54,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:57:54,323 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-24_01-57-54.log]
[testng] 01:57:54,324 |-INFO in ch.qos.logback.core.sift.SiftProcessor@96d371b - End of configuration.
[testng] [2024-09-24 01:57:54,575] [pool-1-thread-9] Initializing /data/karen/425C6157-4CFF-434F-8CDC-5D10CE65F168.jpg:
[testng] 01:57:54,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:57:54,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:57:54,577 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-24_01-57-54.log]
[testng] 01:57:54,579 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48a451c2 - End of configuration.
[testng] [2024-09-24 01:57:54,687] [pool-1-thread-8] Initializing /data/karen/025B2189-8F22-49E7-A23A-93FAC9BABE18.jpg:
[testng] 01:57:54,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:57:54,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:57:54,689 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-24_01-57-54.log]
[testng] 01:57:54,689 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70d26bb0 - End of configuration.
[testng] [2024-09-24 01:57:54,790] [pool-1-thread-7] Initializing /data/karen/AEC8E959-A1A7-4FCA-A755-F3D9DA44C118.jpg:
[testng] 01:57:54,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:57:54,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:57:54,792 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-24_01-57-54.log]
[testng] 01:57:54,793 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e899e9d - End of configuration.
[testng] [2024-09-24 01:57:54,884] [pool-1-thread-6] Initializing /data/karen/C8026BD0-CBB2-4C73-B69F-9E505B47D46D.jpg:
[testng] 01:57:54,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:57:54,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:57:54,885 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-24_01-57-54.log]
[testng] 01:57:54,886 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75e90f66 - End of configuration.
[testng] [2024-09-24 01:57:54,985] [pool-1-thread-5] Initializing /data/karen/BB1976B8-C06C-4CFC-8C94-7AEF45E3E191.jpg:
[testng] 01:57:54,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:57:54,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:57:54,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-24_01-57-54.log]
[testng] 01:57:54,991 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15633ebc - End of configuration.
[testng] [2024-09-24 01:57:55,182] [pool-1-thread-4] Initializing /data/karen/6F44F067-6003-458E-871B-1F9AE1F7C928.jpg:
[testng] 01:57:55,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:57:55,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:57:55,186 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-24_01-57-55.log]
[testng] 01:57:55,187 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6899815d - End of configuration.
[testng] [2024-09-24 01:57:55,397] [pool-1-thread-3] Initializing /data/karen/9C2E458B-73C5-4D03-84F7-060F83B4D95A.jpg:
[testng] 01:57:55,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:57:55,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:57:55,402 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-24_01-57-55.log]
[testng] 01:57:55,404 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52f55830 - End of configuration.
[testng] [2024-09-24 01:57:55,672] [pool-1-thread-2] Initializing /data/karen/94227E77-1CEA-4531-BAD7-1B9152596BC1.jpg:
[testng] 01:57:55,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:57:55,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:57:55,679 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-24_01-57-55.log]
[testng] 01:57:55,681 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45713032 - End of configuration.
[testng] [2024-09-24 01:58:03,514] [pool-1-thread-8] Initializing /data/karen/6F685C73-2CD1-421E-B85B-FC1FA4F3F155.jpg:
[testng] [2024-09-24 01:58:03,684] [pool-1-thread-4] Initializing /data/karen/0017007C-2559-4778-962F-8C4951E89A35.jpg:
[testng] [2024-09-24 01:58:03,761] [pool-1-thread-6] Initializing /data/karen/C6492D1B-CEB2-4CBB-B4E8-88B8828E763D.jpg:
[testng] [2024-09-24 01:58:03,874] [pool-1-thread-9] Initializing /data/karen/885FB907-C91D-4E8E-87AB-611D8A61402C.jpg:
[testng] [2024-09-24 01:58:04,394] [pool-1-thread-1] Initializing /data/karen/6FC2A99A-C50C-4DD0-B379-FA5595AFD2D6.jpg:
[testng] [2024-09-24 01:58:04,475] [pool-1-thread-5] Initializing /data/karen/04CBE9A7-FA1B-4556-9900-6D869E85FFC7.jpg:
[testng] [2024-09-24 01:58:04,805] [pool-1-thread-11] Initializing /data/karen/76336D87-715F-4F65-B069-3D3C548625D5.jpg:
[testng] [2024-09-24 01:58:04,874] [pool-1-thread-7] Initializing /data/karen/E1445030-57F3-4E15-8BF5-763E0F691B0C.jpg:
[testng] [2024-09-24 01:58:05,096] [pool-1-thread-2] Initializing /data/karen/3AF38F06-D489-4DDA-9806-14A3E12FCE7B.jpg:
[testng] [2024-09-24 01:58:06,726] [pool-1-thread-10] Initializing /data/karen/FE241E3F-2DA8-4BA9-99CB-635663EDE04F.jpg:
[testng] [2024-09-24 01:58:08,165] [pool-1-thread-3] Initializing /data/karen/FFB1E060-F4A7-431B-AB93-655CE861D238.jpg:
[testng] [2024-09-24 01:58:08,489] [pool-1-thread-6] Initializing /data/karen/DFCC500D-A2DA-4166-909B-87EA112049A3.jpg:
[testng] [2024-09-24 01:58:08,802] [pool-1-thread-4] Initializing /data/karen/FD96C1D1-ABE6-4478-A673-652AA63435F2.jpg:
[testng] [2024-09-24 01:58:09,060] [pool-1-thread-8] Initializing /data/karen/07AEF934-D3B2-4558-AB51-4BD744DF2DFF.jpg:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1378, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 29 seconds
Finished: SUCCESS