Started by upstream project "BIOFORMATS-test-repo" build number 199
originally caused by:
Started by upstream project "Trigger" build number 223
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins3768303254816305759.sh
+ '[' psd = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_31601_merge_ci -v /test/idr/repos/curated/psd:/data -v /test/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:25:14,673 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:25:14,675 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 02:25:14,675 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:25:14,676 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:25:14,677 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:25:14,677 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:25:14,677 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:25:14,677 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:25:14,678 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:25:14,679 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:25:14,679 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:25:14,680 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:25:14,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:25:14,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:25:14,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:25:14,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:25:15,017 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:25:15,018 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:25:15,018 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:25:15,018 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:25:15,018 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 02:25:15,019 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 02:25:15,020 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 342 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-09-25 02:25:15,036] [main] java.version = 17.0.2
[testng] 02:25:15,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:25:15,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:25:15,145 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-25_02-25-15.log]
[testng] 02:25:15,147 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-09-25 02:25:15,162] [main] testng.directory = /data
[testng] [2024-09-25 02:25:15,162] [main] testng.configDirectory = /config
[testng] [2024-09-25 02:25:15,193] [main] testng.multiplier = 1.0
[testng] [2024-09-25 02:25:15,195] [main] testng.in-memory = false
[testng] [2024-09-25 02:25:15,195] [main] testng.allow-missing = false
[testng] [2024-09-25 02:25:15,195] [main] user.language = en
[testng] [2024-09-25 02:25:15,196] [main] user.country = ${user.country}
[testng] [2024-09-25 02:25:15,196] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-09-25 02:25:15,822] [main] ----------------------------------------
[testng] [2024-09-25 02:25:15,822] [main] Total files: 18
[testng] [2024-09-25 02:25:15,822] [main] Scan time: 0.626 s (34 ms/file)
[testng] [2024-09-25 02:25:15,822] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-09-25 02:25:17,435] [pool-1-thread-1] Initializing /data/ascb/607x.psd:
[testng] 02:25:17,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:25:17,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:25:17,440 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-25_02-25-17.log]
[testng] 02:25:17,441 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36e97527 - End of configuration.
[testng] [2024-09-25 02:25:17,502] [pool-1-thread-12] Initializing /data/jcb/Fig5A_sip1506h.tif:
[testng] 02:25:17,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:25:17,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:25:17,503 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-25_02-25-17.log]
[testng] 02:25:17,504 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23dedc0 - End of configuration.
[testng] [2024-09-25 02:25:17,533] [pool-1-thread-11] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd:
[testng] 02:25:17,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:25:17,534 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:25:17,536 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-25_02-25-17.log]
[testng] 02:25:17,537 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47017ed0 - End of configuration.
[testng] [2024-09-25 02:25:17,593] [pool-1-thread-10] Initializing /data/misc/smilie.psd:
[testng] 02:25:17,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:25:17,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:25:17,595 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-25_02-25-17.log]
[testng] 02:25:17,599 |-INFO in ch.qos.logback.core.sift.SiftProcessor@dc8e8ad - End of configuration.
[testng] [2024-09-25 02:25:17,631] [pool-1-thread-9] Initializing /data/jcb/Fig5A_sicont6h.tif:
[testng] 02:25:17,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:25:17,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:25:17,633 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-25_02-25-17.log]
[testng] 02:25:17,634 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5397e18a - End of configuration.
[testng] [2024-09-25 02:25:17,675] [pool-1-thread-8] Initializing /data/misc/glossy_orbs.psd:
[testng] 02:25:17,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:25:17,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:25:17,677 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-25_02-25-17.log]
[testng] 02:25:17,677 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7461d7e5 - End of configuration.
[testng] [2024-09-25 02:25:17,689] [pool-1-thread-7] Initializing /data/jcb/Fig5A_siHP16h.tif:
[testng] 02:25:17,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:25:17,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:25:17,691 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-25_02-25-17.log]
[testng] 02:25:17,692 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56a5a589 - End of configuration.
[testng] [2024-09-25 02:25:17,732] [pool-1-thread-6] Initializing /data/misc/vig_drawing_1.psd:
[testng] 02:25:17,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:25:17,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:25:17,734 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-25_02-25-17.log]
[testng] 02:25:17,734 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20cb239 - End of configuration.
[testng] [2024-09-25 02:25:17,783] [pool-1-thread-5] Initializing /data/ascb/423.psd:
[testng] 02:25:17,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:25:17,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:25:17,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-25_02-25-17.log]
[testng] 02:25:17,791 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b4efa30 - End of configuration.
[testng] [2024-09-25 02:25:17,874] [pool-1-thread-4] Initializing /data/misc/venus_composite_8bit.psd:
[testng] 02:25:17,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:25:17,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:25:17,882 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-25_02-25-17.log]
[testng] 02:25:17,883 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a67480f - End of configuration.
[testng] [2024-09-25 02:25:17,965] [pool-1-thread-3] Initializing /data/qa-7632/23283078__NA_NA_27343.psd:
[testng] 02:25:17,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:25:17,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:25:17,967 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-25_02-25-17.log]
[testng] 02:25:17,968 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c8f6f59 - End of configuration.
[testng] [2024-09-25 02:25:17,998] [pool-1-thread-2] Initializing /data/big-images/8kx8k.psd:
[testng] 02:25:17,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:25:17,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:25:17,999 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-25_02-25-17.log]
[testng] 02:25:18,000 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36451b94 - End of configuration.
[testng] [2024-09-25 02:25:21,072] [pool-1-thread-8] Initializing /data/qa-4117/caspase gel-1.psd:
[testng] [2024-09-25 02:25:21,124] [pool-1-thread-11] Initializing /data/ascb/thin&thick fill.2.psd:
[testng] [2024-09-25 02:25:21,158] [pool-1-thread-10] Initializing /data/simon/colour_separated_image.psd:
[testng] [2024-09-25 02:25:21,308] [pool-1-thread-6] Initializing /data/cris/house.tif:
[testng] [2024-09-25 02:25:21,687] [pool-1-thread-12] Initializing /data/misc/glossy_buttons.psd:
[testng] [2024-09-25 02:25:21,703] [pool-1-thread-9] Initializing /data/misc/venus_composite.psd:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 37 seconds
Finished: SUCCESS