Started by upstream project "BIOFORMATS-test-repo" build number 200
originally caused by:
Started by upstream project "Trigger" build number 225
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins8334236410928290159.sh
+ '[' bigtiff = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_31675_merge_ci -v /uod/idr/repos/curated/bigtiff:/data -v /uod/idr-scratch/merge-ci/curated/bigtiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 06:46:00,518 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 06:46:00,520 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
[testng] 06:46:00,520 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 06:46:00,526 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 06:46:00,526 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 06:46:00,527 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 06:46:00,527 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 06:46:00,527 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 06:46:00,528 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 06:46:00,528 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 06:46:00,528 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 06:46:00,529 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 06:46:00,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 06:46:00,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 06:46:00,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 06:46:00,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 06:46:00,900 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 06:46:00,901 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 06:46:00,901 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 06:46:00,901 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 06:46:00,901 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
[testng] 06:46:00,906 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
[testng] 06:46:00,906 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 378 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-09-26 06:46:00,916] [main] java.version = 21
[testng] 06:46:00,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 06:46:00,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:46:01,147 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-26_06-46-01.log]
[testng] 06:46:01,148 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
[testng] [2024-09-26 06:46:01,150] [main] testng.directory = /data
[testng] [2024-09-26 06:46:01,150] [main] testng.configDirectory = /config
[testng] [2024-09-26 06:46:01,199] [main] testng.multiplier = 1.0
[testng] [2024-09-26 06:46:01,230] [main] testng.in-memory = false
[testng] [2024-09-26 06:46:01,230] [main] testng.allow-missing = false
[testng] [2024-09-26 06:46:01,230] [main] user.language = en
[testng] [2024-09-26 06:46:01,230] [main] user.country = ${user.country}
[testng] [2024-09-26 06:46:01,230] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-09-26 06:46:03,277] [main] ----------------------------------------
[testng] [2024-09-26 06:46:03,277] [main] Total files: 14
[testng] [2024-09-26 06:46:03,277] [main] Scan time: 2.047 s (146 ms/file)
[testng] [2024-09-26 06:46:03,277] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-09-26 06:46:21,168] [pool-1-thread-1] Initializing /data/carlsen/Olympics8-lzw.tif:
[testng] 06:46:21,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 06:46:21,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:46:21,171 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-26_06-46-21.log]
[testng] 06:46:21,171 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59e536e6 - End of configuration.
[testng] [2024-09-26 06:46:21,339] [pool-1-thread-12] Initializing /data/samples/BigTIFF.tif:
[testng] 06:46:21,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 06:46:21,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:46:21,340 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-26_06-46-21.log]
[testng] 06:46:21,340 |-INFO in ch.qos.logback.core.sift.SiftProcessor@426602e - End of configuration.
[testng] [2024-09-26 06:46:21,477] [pool-1-thread-11] Initializing /data/samples/BigTIFFLong8.tif:
[testng] 06:46:21,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 06:46:21,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:46:21,478 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-26_06-46-21.log]
[testng] 06:46:21,479 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3285db32 - End of configuration.
[testng] [2024-09-26 06:46:21,598] [pool-1-thread-10] Initializing /data/samples/BigTIFFSubIFD4.tif:
[testng] 06:46:21,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 06:46:21,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:46:21,600 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-26_06-46-21.log]
[testng] 06:46:21,600 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41b76a90 - End of configuration.
[testng] [2024-09-26 06:46:21,750] [pool-1-thread-9] Initializing /data/samples/Classic.tif:
[testng] 06:46:21,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 06:46:21,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:46:21,751 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-26_06-46-21.log]
[testng] 06:46:21,751 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3eb47eab - End of configuration.
[testng] [2024-09-26 06:46:21,935] [pool-1-thread-8] Initializing /data/samples/BigTIFFMotorola.tif:
[testng] 06:46:21,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 06:46:21,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:46:21,936 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-26_06-46-21.log]
[testng] 06:46:21,937 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5aa96d36 - End of configuration.
[testng] [2024-09-26 06:46:22,091] [pool-1-thread-7] Initializing /data/carlsen/Olympics8.tif:
[testng] 06:46:22,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 06:46:22,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:46:22,092 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-26_06-46-22.log]
[testng] 06:46:22,092 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cfd5188 - End of configuration.
[testng] [2024-09-26 06:46:22,232] [pool-1-thread-6] Initializing /data/samples/BigTIFFSubIFD8.tif:
[testng] 06:46:22,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 06:46:22,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:46:22,233 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-26_06-46-22.log]
[testng] 06:46:22,233 |-INFO in ch.qos.logback.core.sift.SiftProcessor@103e211f - End of configuration.
[testng] [2024-09-26 06:46:22,444] [pool-1-thread-5] Initializing /data/samples/BigTIFFLong8Tiles.tif:
[testng] 06:46:22,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 06:46:22,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:46:22,445 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-26_06-46-22.log]
[testng] 06:46:22,446 |-INFO in ch.qos.logback.core.sift.SiftProcessor@446d70f0 - End of configuration.
[testng] [2024-09-26 06:46:22,616] [pool-1-thread-4] Initializing /data/samples/BigTIFFMotorolaLongStrips.tif:
[testng] 06:46:22,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 06:46:22,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:46:22,617 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-26_06-46-22.log]
[testng] 06:46:22,618 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e18a159 - End of configuration.
[testng] [2024-09-26 06:46:22,810] [pool-1-thread-3] Initializing /data/samples/BigTIFFLong.tif:
[testng] 06:46:22,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 06:46:22,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:46:22,811 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-26_06-46-22.log]
[testng] 06:46:22,812 |-INFO in ch.qos.logback.core.sift.SiftProcessor@630b8c0a - End of configuration.
[testng] [2024-09-26 06:46:23,006] [pool-1-thread-2] Initializing /data/carlsen/Olympics8-raw.tif:
[testng] 06:46:23,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 06:46:23,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:46:23,007 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-26_06-46-23.log]
[testng] 06:46:23,008 |-INFO in ch.qos.logback.core.sift.SiftProcessor@193ac080 - End of configuration.
[testng] [2024-09-26 06:46:28,136] [pool-1-thread-11] Initializing /data/colin/7S59P8I1_F00000012.btf:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 52 seconds
Finished: SUCCESS