Started by upstream project "BIOFORMATS-test-repo" build number 200 originally caused by: Started by upstream project "Trigger" build number 225 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins8428507300936774315.sh + '[' ome-tiff = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_31693_merge_ci -v /uod/idr/repos/curated/ome-tiff:/data -v /uod/idr-scratch/merge-ci/curated/ome-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 06:52:02,646 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 06:52:02,648 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 06:52:02,648 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:52:02,649 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:52:02,649 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 06:52:02,649 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 06:52:02,650 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 06:52:02,650 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:52:02,650 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:52:02,651 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 06:52:02,651 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 06:52:02,651 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 06:52:02,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:52:02,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:52:02,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:52:02,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:52:02,836 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:52:02,837 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:52:02,837 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:52:02,837 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:52:02,837 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 06:52:02,838 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 06:52:02,838 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 188 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-26 06:52:02,847] [main] java.version = 21 [testng] 06:52:02,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:52:02,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:52:02,902 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-26_06-52-02.log] [testng] 06:52:02,905 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-09-26 06:52:02,910] [main] testng.directory = /data [testng] [2024-09-26 06:52:02,910] [main] testng.configDirectory = /config [testng] [2024-09-26 06:52:02,922] [main] testng.multiplier = 1.0 [testng] [2024-09-26 06:52:02,923] [main] testng.in-memory = false [testng] [2024-09-26 06:52:02,923] [main] testng.allow-missing = false [testng] [2024-09-26 06:52:02,923] [main] user.language = en [testng] [2024-09-26 06:52:02,923] [main] user.country = ${user.country} [testng] [2024-09-26 06:52:02,923] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-26 06:56:22,343] [main] ---------------------------------------- [testng] [2024-09-26 06:56:22,343] [main] Total files: 4771 [testng] [2024-09-26 06:56:22,343] [main] Scan time: 259.42 s (54 ms/file) [testng] [2024-09-26 06:56:22,344] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 1455 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-26 07:36:28,052] [pool-1-thread-1] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X02--Y03/image--L06--S00--U00--V00--J00--X02--Y03--T06--Z00--C00.ome.tif: [testng] 07:36:28,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 07:36:28,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:36:28,054 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-26_07-36-28.log] [testng] 07:36:28,054 |-INFO in ch.qos.logback.core.sift.SiftProcessor@456eedf4 - End of configuration. [testng] [2024-09-26 07:36:28,844] [pool-1-thread-12] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X00--Y04/image--L05--S00--U00--V00--J00--X00--Y04--T05--Z00--C00.ome.tif: [testng] 07:36:28,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:36:28,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:36:28,845 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-26_07-36-28.log] [testng] 07:36:28,845 |-INFO in ch.qos.logback.core.sift.SiftProcessor@652a7546 - End of configuration. [testng] [2024-09-26 07:36:29,565] [pool-1-thread-11] Initializing /data/curtis/mc4s-db.ome.tif: [testng] 07:36:29,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 07:36:29,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:36:29,566 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-26_07-36-29.log] [testng] 07:36:29,567 |-INFO in ch.qos.logback.core.sift.SiftProcessor@416172a2 - End of configuration. [testng] [2024-09-26 07:36:30,952] [pool-1-thread-10] Initializing /data/andor/iQMM_FURA_TIME3_WAVELENGTH1_0.ome.tif: [testng] 07:36:30,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 07:36:30,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:36:30,953 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-26_07-36-30.log] [testng] 07:36:30,953 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d75b4b4 - End of configuration. [testng] [2024-09-26 07:36:31,833] [pool-1-thread-9] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X06--Y04/image--L08--S00--U00--V00--J00--X06--Y04--T08--Z00--C00.ome.tif: [testng] 07:36:31,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:36:31,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:36:31,834 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-26_07-36-31.log] [testng] 07:36:31,835 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68054de1 - End of configuration. [testng] [2024-09-26 07:36:32,564] [pool-1-thread-8] Initializing /data/ruben/experiment--2009_10_27_15_43_34/slide--S00/chamber--U00--V00/field--X05--Y00/image--L00--S00--U00--V00--J00--X05--Y00--T00--Z00--C00.ome.tif: [testng] 07:36:32,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 07:36:32,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:36:32,565 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-26_07-36-32.log] [testng] 07:36:32,565 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38e2e727 - End of configuration. [testng] [2024-09-26 07:36:33,304] [pool-1-thread-7] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X00--Y04/image--L14--S00--U00--V00--J00--X00--Y04--T14--Z00--C00.ome.tif: [testng] 07:36:33,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 07:36:33,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:36:33,305 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-26_07-36-33.log] [testng] 07:36:33,305 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54f2cec1 - End of configuration. [testng] [2024-09-26 07:36:34,021] [pool-1-thread-6] Initializing /data/andor/iQMM_FURA_TIME111_WAVELENGTH1_0.ome.tif: [testng] 07:36:34,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 07:36:34,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:36:34,022 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-26_07-36-34.log] [testng] 07:36:34,022 |-INFO in ch.qos.logback.core.sift.SiftProcessor@639bc73 - End of configuration. [testng] [2024-09-26 07:36:34,822] [pool-1-thread-5] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X00--Y03/image--L07--S00--U00--V00--J00--X00--Y03--T07--Z00--C00.ome.tif: [testng] 07:36:34,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 07:36:34,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:36:34,823 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-26_07-36-34.log] [testng] 07:36:34,823 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4aaa1996 - End of configuration. [testng] [2024-09-26 07:36:35,555] [pool-1-thread-4] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X03--Y05/image--L11--S00--U00--V00--J00--X03--Y05--T11--Z00--C00.ome.tif: [testng] 07:36:35,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 07:36:35,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:36:35,556 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-26_07-36-35.log] [testng] 07:36:35,556 |-INFO in ch.qos.logback.core.sift.SiftProcessor@732354e5 - End of configuration. [testng] [2024-09-26 07:36:36,292] [pool-1-thread-3] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X05--Y02/image--L07--S00--U00--V00--J00--X05--Y02--T07--Z00--C00.ome.tif: [testng] 07:36:36,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 07:36:36,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:36:36,293 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-26_07-36-36.log] [testng] 07:36:36,294 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38828697 - End of configuration. [testng] [2024-09-26 07:36:37,066] [pool-1-thread-2] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X05--Y02/image--L14--S00--U00--V00--J00--X05--Y02--T14--Z00--C00.ome.tif: [testng] 07:36:37,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 07:36:37,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:36:37,067 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-26_07-36-37.log] [testng] 07:36:37,068 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9830341 - End of configuration. [testng] [2024-09-26 07:36:46,604] [pool-1-thread-7] Initializing /data/public/2015-01/bioformats-artificial/multi-channel.ome.tif: [testng] [2024-09-26 07:36:47,399] [pool-1-thread-2] Initializing /data/andor/iQMM_FURA_TIME158_WAVELENGTH1_0.ome.tif: [testng] [2024-09-26 07:36:48,326] [pool-1-thread-5] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X02--Y01/image--L14--S00--U00--V00--J00--X02--Y01--T14--Z00--C00.ome.tif: [testng] [2024-09-26 07:36:49,040] [pool-1-thread-8] Initializing /data/andor/iQMM_FURA_TIME87_WAVELENGTH0_0.ome.tif: [testng] [2024-09-26 07:36:49,883] [pool-1-thread-3] Initializing /data/andor/iQMM_FURA_TIME159_WAVELENGTH1_0.ome.tif: [testng] [2024-09-26 07:36:50,623] [pool-1-thread-1] Initializing /data/andor/iQMM_FURA_TIME93_WAVELENGTH0_0.ome.tif: [testng] [2024-09-26 07:36:51,559] [pool-1-thread-9] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X01--Y01/image--L10--S00--U00--V00--J00--X01--Y01--T10--Z00--C00.ome.tif: [testng] [2024-09-26 07:36:52,437] [pool-1-thread-11] Initializing /data/heinrich/3150248 Ex590.ome.tif: [testng] [2024-09-26 07:36:53,410] [pool-1-thread-10] Initializing /data/andor/iQMM_FURA_TIME42_WAVELENGTH0_0.ome.tif: [testng] [2024-09-26 07:36:54,514] [pool-1-thread-6] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X05--Y06/image--L00--S00--U00--V00--J00--X05--Y06--T00--Z00--C00.ome.tif: [testng] [2024-09-26 07:36:55,514] [pool-1-thread-12] Initializing /data/curtis/single-channel.ome.tif: [testng] [2024-09-26 07:36:56,479] [pool-1-thread-4] Initializing /data/curtis/z-series.ome.tif: [testng] [2024-09-26 07:37:02,464] [pool-1-thread-7] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X02--Y05/image--L00--S00--U00--V00--J00--X02--Y05--T00--Z00--C00.ome.tif: [testng] [2024-09-26 07:37:03,259] [pool-1-thread-4] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X05--Y02/image--L11--S00--U00--V00--J00--X05--Y02--T11--Z00--C00.ome.tif: [testng] [2024-09-26 07:37:06,670] [pool-1-thread-5] Initializing /data/glen/OMETiff Slidebook/Capture 2 - Position 1_XYT0.tif: [testng] [2024-09-26 07:37:07,987] [pool-1-thread-6] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X00--Y05/image--L02--S00--U00--V00--J00--X00--Y05--T02--Z00--C00.ome.tif: [testng] [2024-09-26 07:37:08,938] [pool-1-thread-9] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X05--Y05/image--L12--S00--U00--V00--J00--X05--Y05--T12--Z00--C00.ome.tif: [testng] [2024-09-26 07:37:09,733] [pool-1-thread-1] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X05--Y02/image--L06--S00--U00--V00--J00--X05--Y02--T06--Z00--C00.ome.tif: [testng] [2024-09-26 07:37:10,512] [pool-1-thread-12] Initializing /data/oliver/LA_ProtocolCombination_12.10.2009_21_40_58_Marker_1__3 2.tif: [testng] [2024-09-26 07:37:17,347] [pool-1-thread-11] Initializing /data/andor/iQMM_FURA_TIME176_WAVELENGTH1_0.ome.tif: [testng] [2024-09-26 07:37:18,024] [pool-1-thread-2] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X04--Y03/image--L01--S00--U00--V00--J00--X04--Y03--T01--Z00--C00.ome.tif: [testng] [2024-09-26 07:37:18,723] [pool-1-thread-10] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X06--Y02/image--L04--S00--U00--V00--J00--X06--Y02--T04--Z00--C00.ome.tif: [testng] [2024-09-26 07:37:19,477] [pool-1-thread-8] Initializing 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08:30:01,473] [pool-1-thread-8] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X01--Y06/image--L02--S00--U00--V00--J00--X01--Y06--T02--Z00--C00.ome.tif: [testng] [2024-09-26 08:30:06,051] [pool-1-thread-1] Initializing /data/public/2010-04/single-image.ome.tiff: [testng] [2024-09-26 08:30:07,530] [pool-1-thread-10] Initializing /data/public/2015-01/binaryonly/multifile-Z1.ome.tiff: [testng] [2024-09-26 08:30:08,495] [pool-1-thread-11] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X01--Y01/image--L07--S00--U00--V00--J00--X01--Y01--T07--Z00--C00.ome.tif: [testng] [2024-09-26 08:30:13,722] [pool-1-thread-8] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X01--Y06/image--L04--S00--U00--V00--J00--X01--Y06--T04--Z00--C00.ome.tif: [testng] [2024-09-26 08:30:14,984] [pool-1-thread-9] Initializing 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[pool-1-thread-8] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X06--Y05/image--L03--S00--U00--V00--J00--X06--Y05--T03--Z00--C00.ome.tif: [testng] [2024-09-26 08:31:07,955] [pool-1-thread-5] Initializing /data/andor/iQMM_FURA_TIME70_WAVELENGTH1_0.ome.tif: [testng] [2024-09-26 08:31:09,123] [pool-1-thread-11] Initializing /data/andor/iQMM_FURA_TIME105_WAVELENGTH1_0.ome.tif: [testng] [2024-09-26 08:31:10,223] [pool-1-thread-9] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X01--Y02/image--L01--S00--U00--V00--J00--X01--Y02--T01--Z00--C00.ome.tif: [testng] [2024-09-26 08:31:13,905] [pool-1-thread-1] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X03--Y06/image--L06--S00--U00--V00--J00--X03--Y06--T06--Z00--C00.ome.tif: [testng] [2024-09-26 08:31:17,678] [pool-1-thread-10] Initializing /data/andor/iQMM_FURA_TIME162_WAVELENGTH0_0.ome.tif: [testng] [2024-09-26 08:31:21,283] [pool-1-thread-8] Initializing /data/andor/iQMM_FURA_TIME136_WAVELENGTH1_0.ome.tif: [testng] [2024-09-26 08:31:22,146] [pool-1-thread-9] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X06--Y03/image--L01--S00--U00--V00--J00--X06--Y03--T01--Z00--C00.ome.tif: [testng] [2024-09-26 08:31:23,925] [pool-1-thread-5] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X00--Y05/image--L06--S00--U00--V00--J00--X00--Y05--T06--Z00--C00.ome.tif: [testng] [2024-09-26 08:31:24,786] [pool-1-thread-11] Initializing /data/andor/iQMM_FURA_TIME81_WAVELENGTH0_0.ome.tif: [testng] [2024-09-26 08:31:26,197] [pool-1-thread-1] Initializing /data/public/2016-06/bioformats-artificial/single-channel.ome.tf8: [testng] [2024-09-26 08:31:30,892] [pool-1-thread-9] Initializing 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/data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X03--Y02/image--L12--S00--U00--V00--J00--X03--Y02--T12--Z00--C00.ome.tif: [testng] [2024-09-26 08:31:55,627] [pool-1-thread-5] Initializing /data/public/2010-06/multi-channel-z-series-time-series.ome.tiff: [testng] [2024-09-26 08:31:58,105] [pool-1-thread-1] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X02--Y01/image--L04--S00--U00--V00--J00--X02--Y01--T04--Z00--C00.ome.tif: [testng] [2024-09-26 08:31:58,989] [pool-1-thread-11] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X03--Y02/image--L06--S00--U00--V00--J00--X03--Y02--T06--Z00--C00.ome.tif: [testng] [2024-09-26 08:32:01,732] [pool-1-thread-8] Initializing /data/andor/iQMM_FURA_TIME121_WAVELENGTH0_0.ome.tif: [testng] [2024-09-26 08:32:02,453] [pool-1-thread-5] Initializing /data/ruben/experiment--2009_10_27_15_43_34/slide--S00/chamber--U00--V00/field--X03--Y00/image--L00--S00--U00--V00--J00--X03--Y00--T00--Z00--C00.ome.tif: [testng] [2024-09-26 08:32:03,363] [pool-1-thread-9] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X00--Y00/image--L01--S00--U00--V00--J00--X00--Y00--T01--Z00--C00.ome.tif: [testng] [2024-09-26 08:32:04,129] [pool-1-thread-10] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X04--Y01/image--L06--S00--U00--V00--J00--X04--Y01--T06--Z00--C00.ome.tif: [testng] [2024-09-26 08:32:07,562] [pool-1-thread-11] Initializing /data/idr0052/cell0007_R0001.companion.ome: [testng] [2024-09-26 08:33:15,992] [pool-1-thread-1] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X01--Y02/image--L12--S00--U00--V00--J00--X01--Y02--T12--Z00--C00.ome.tif: [testng] [2024-09-26 08:33:19,389] [pool-1-thread-9] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X04--Y04/image--L13--S00--U00--V00--J00--X04--Y04--T13--Z00--C00.ome.tif: [testng] [2024-09-26 08:33:20,192] [pool-1-thread-5] Initializing /data/ruben/experiment--2009_10_27_15_43_34/slide--S00/chamber--U00--V00/field--X03--Y01/image--L00--S00--U00--V00--J00--X03--Y01--T00--Z00--C00.ome.tif: [testng] [2024-09-26 08:33:20,947] [pool-1-thread-10] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X00--Y01/image--L01--S00--U00--V00--J00--X00--Y01--T01--Z00--C00.ome.tif: [testng] [2024-09-26 08:33:21,951] [pool-1-thread-8] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X06--Y01/image--L10--S00--U00--V00--J00--X06--Y01--T10--Z00--C00.ome.tif: [testng] [2024-09-26 08:33:25,045] [pool-1-thread-1] Initializing /data/andor/iQMM_FURA_TIME20_WAVELENGTH1_0.ome.tif: [testng] [2024-09-26 08:33:27,803] [pool-1-thread-9] Initializing /data/andor/iQMM_FURA_TIME64_WAVELENGTH0_0.ome.tif: [testng] [2024-09-26 08:33:29,995] [pool-1-thread-8] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X05--Y05/image--L11--S00--U00--V00--J00--X05--Y05--T11--Z00--C00.ome.tif: [testng] [2024-09-26 08:33:30,732] [pool-1-thread-5] Initializing /data/andor/iQMM_FURA_TIME37_WAVELENGTH1_0.ome.tif: [testng] [2024-09-26 08:33:31,378] [pool-1-thread-10] Initializing /data/chris/Video1_SGMCA.ome.tiff: [testng] [2024-09-26 08:33:35,987] [pool-1-thread-1] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X00--Y01/image--L10--S00--U00--V00--J00--X00--Y01--T10--Z00--C00.ome.tif: [testng] [2024-09-26 08:33:38,284] [pool-1-thread-9] Initializing /data/ruben/experiment--2009_10_27_15_43_34/slide--S00/chamber--U00--V00/field--X02--Y01/image--L00--S00--U00--V00--J00--X02--Y01--T00--Z00--C00.ome.tif: [testng] [2024-09-26 08:33:39,059] [pool-1-thread-10] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X02--Y01/image--L09--S00--U00--V00--J00--X02--Y01--T09--Z00--C00.ome.tif: [testng] [2024-09-26 08:33:39,757] [pool-1-thread-8] Initializing /data/andor/iQMM_FURA_TIME144_WAVELENGTH1_0.ome.tif: [testng] [2024-09-26 08:33:40,519] [pool-1-thread-5] Initializing /data/public/2016-06/modulo/SPIM-ModuloAlongZ.ome.tiff: [testng] [2024-09-26 08:33:43,892] [pool-1-thread-1] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X00--Y06/image--L06--S00--U00--V00--J00--X00--Y06--T06--Z00--C00.ome.tif: [testng] 09:30:12,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:30:12,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:30:12,488 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-26_09-30-12.log] [testng] 09:30:12,488 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c3c492 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 77115, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 158 minutes 13 seconds Finished: SUCCESS