Started by upstream project "BIOFORMATS-test-repo" build number 200 originally caused by: Started by upstream project "Trigger" build number 225 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins4086117765632963636.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_31717_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 07:42:26,248 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 07:42:26,250 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 07:42:26,250 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:42:26,251 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:42:26,251 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 07:42:26,252 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 07:42:26,252 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 07:42:26,252 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:42:26,253 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:42:26,254 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 07:42:26,254 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 07:42:26,254 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 07:42:26,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 07:42:26,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 07:42:26,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 07:42:26,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 07:42:26,481 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 07:42:26,481 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 07:42:26,481 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 07:42:26,481 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 07:42:26,482 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 07:42:26,482 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 07:42:26,483 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 230 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-26 07:42:26,498] [main] java.version = 21 [testng] 07:42:26,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:42:26,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:42:26,548 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-26_07-42-26.log] [testng] 07:42:26,550 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-09-26 07:42:26,552] [main] testng.directory = /data [testng] [2024-09-26 07:42:26,552] [main] testng.configDirectory = /config [testng] [2024-09-26 07:42:26,561] [main] testng.multiplier = 1.0 [testng] [2024-09-26 07:42:26,563] [main] testng.in-memory = false [testng] [2024-09-26 07:42:26,563] [main] testng.allow-missing = false [testng] [2024-09-26 07:42:26,563] [main] user.language = en [testng] [2024-09-26 07:42:26,563] [main] user.country = ${user.country} [testng] [2024-09-26 07:42:26,563] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-26 07:54:31,558] [main] ---------------------------------------- [testng] [2024-09-26 07:54:31,558] [main] Total files: 7329 [testng] [2024-09-26 07:54:31,559] [main] Scan time: 724.995 s (98 ms/file) [testng] [2024-09-26 07:54:31,559] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-26 08:06:20,078] [pool-1-thread-1] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] 08:06:20,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:06:20,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:06:20,080 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-26_08-06-20.log] [testng] 08:06:20,080 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d69fdc9 - End of configuration. [testng] [2024-09-26 08:06:21,528] [pool-1-thread-12] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] 08:06:21,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:06:21,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:06:21,529 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-26_08-06-21.log] [testng] 08:06:21,529 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e944080 - End of configuration. [testng] [2024-09-26 08:06:22,832] [pool-1-thread-11] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] 08:06:22,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:06:22,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:06:22,833 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-26_08-06-22.log] [testng] 08:06:22,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7193dad2 - End of configuration. [testng] [2024-09-26 08:06:24,121] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] 08:06:24,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:06:24,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:06:24,122 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-26_08-06-24.log] [testng] 08:06:24,122 |-INFO in ch.qos.logback.core.sift.SiftProcessor@84a8222 - End of configuration. [testng] [2024-09-26 08:06:25,493] [pool-1-thread-9] Initializing /data/graham/G_Wright deconvolved.stk: [testng] 08:06:25,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:06:25,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:06:25,494 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-26_08-06-25.log] [testng] 08:06:25,494 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b8bc0dc - End of configuration. [testng] [2024-09-26 08:06:26,828] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] 08:06:26,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:06:26,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:06:26,830 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-26_08-06-26.log] [testng] 08:06:26,830 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10a8468f - End of configuration. [testng] [2024-09-26 08:06:28,333] [pool-1-thread-7] Initializing /data/qa-16915/m-01.tif: [testng] 08:06:28,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:06:28,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:06:28,334 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-26_08-06-28.log] [testng] 08:06:28,335 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18ef34e9 - End of configuration. [testng] [2024-09-26 08:06:30,330] [pool-1-thread-6] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] 08:06:30,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:06:30,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:06:30,331 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-26_08-06-30.log] [testng] 08:06:30,331 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ad6ad68 - End of configuration. [testng] [2024-09-26 08:06:31,972] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] 08:06:31,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:06:31,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:06:31,973 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-26_08-06-31.log] [testng] 08:06:31,973 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10f461a0 - End of configuration. [testng] [2024-09-26 08:06:37,933] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] 08:06:37,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:06:37,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:06:37,933 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-26_08-06-37.log] [testng] 08:06:37,934 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ded32b9 - End of configuration. [testng] [2024-09-26 08:06:39,336] [pool-1-thread-3] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] 08:06:39,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:06:39,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:06:39,337 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-26_08-06-39.log] [testng] 08:06:39,337 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1314fad9 - End of configuration. [testng] [2024-09-26 08:06:41,092] [pool-1-thread-2] Initializing /data/heiko/sample_3x3.stk: [testng] 08:06:41,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:06:41,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:06:41,093 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-26_08-06-41.log] [testng] 08:06:41,093 |-INFO in ch.qos.logback.core.sift.SiftProcessor@234bd664 - End of configuration. [testng] [2024-09-26 08:06:53,008] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-09-26 08:06:54,846] [pool-1-thread-10] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-09-26 08:06:56,366] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-09-26 08:07:04,335] [pool-1-thread-1] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-09-26 08:07:06,059] [pool-1-thread-6] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-09-26 08:07:07,453] [pool-1-thread-12] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-09-26 08:07:08,966] [pool-1-thread-7] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-09-26 08:07:10,494] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-09-26 08:07:12,771] [pool-1-thread-2] Used files list does not include base file [testng] [2024-09-26 08:07:17,336] [pool-1-thread-11] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-09-26 08:07:44,609] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-09-26 08:07:47,994] [pool-1-thread-10] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-09-26 08:07:52,251] [pool-1-thread-1] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-09-26 08:07:56,170] [pool-1-thread-7] Initializing /data/dave/Z Series.stk: [testng] [2024-09-26 08:07:58,071] [pool-1-thread-3] Initializing /data/jerome/deconv.STK: [testng] [2024-09-26 08:07:59,703] [pool-1-thread-4] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-09-26 08:08:03,679] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-09-26 08:08:08,462] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-09-26 08:08:09,751] [pool-1-thread-6] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-09-26 08:08:11,465] [pool-1-thread-10] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-09-26 08:08:14,142] [pool-1-thread-7] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-09-26 08:08:15,803] [pool-1-thread-3] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-09-26 08:08:19,607] [pool-1-thread-12] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-09-26 08:08:26,485] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-09-26 08:08:29,403] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-09-26 08:08:33,324] [pool-1-thread-7] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-09-26 08:08:38,622] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-09-26 08:08:40,936] [pool-1-thread-12] Used files list does not include base file [testng] [2024-09-26 08:08:42,340] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-09-26 08:08:45,141] [pool-1-thread-3] Used files list does not include base file [testng] [2024-09-26 08:08:45,176] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-09-26 08:08:56,196] [pool-1-thread-8] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-09-26 08:08:58,237] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-09-26 08:09:08,320] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-09-26 08:09:11,292] [pool-1-thread-2] Used files list does not include base file [testng] [2024-09-26 08:09:12,392] [pool-1-thread-6] Initializing /data/samples/zserEight.stk: [testng] [2024-09-26 08:09:17,949] [pool-1-thread-12] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-09-26 08:09:21,587] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-26 08:09:26,989] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-09-26 08:09:29,897] [pool-1-thread-6] Used files list does not include base file [testng] [2024-09-26 08:09:41,954] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-09-26 08:09:53,536] [pool-1-thread-7] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-09-26 08:09:55,927] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-09-26 08:10:07,644] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-09-26 08:10:09,775] [pool-1-thread-7] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-09-26 08:10:11,882] [pool-1-thread-5] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-09-26 08:10:57,243] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-09-26 08:10:59,029] [pool-1-thread-10] Initializing /data/qa-16915/m-04.tif: [testng] [2024-09-26 08:11:01,025] [pool-1-thread-2] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-09-26 08:11:02,535] [pool-1-thread-3] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-09-26 08:11:04,468] [pool-1-thread-1] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-09-26 08:11:12,738] [pool-1-thread-8] Initializing /data/samples/10xcalib.stk: [testng] [2024-09-26 08:11:14,121] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-26 08:11:15,757] [pool-1-thread-1] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-09-26 08:11:17,286] [pool-1-thread-10] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-09-26 08:11:18,888] [pool-1-thread-3] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-09-26 08:11:25,265] [pool-1-thread-7] Initializing /data/josh/2101to600astk.stk: [testng] [2024-09-26 08:12:01,618] [pool-1-thread-8] Initializing /data/cumol-test-series/23.001: [testng] [2024-09-26 08:12:05,543] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-09-26 08:12:08,597] [pool-1-thread-10] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-09-26 08:12:10,226] [pool-1-thread-6] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-09-26 08:12:17,157] [pool-1-thread-1] Initializing /data/ascb/mt aim.tif: [testng] [2024-09-26 08:12:28,432] [pool-1-thread-1] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-09-26 08:12:31,833] [pool-1-thread-2] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2024-09-26 08:12:42,631] [pool-1-thread-1] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-09-26 08:13:04,754] [pool-1-thread-10] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-09-26 08:13:11,847] [pool-1-thread-8] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-09-26 08:13:17,422] [pool-1-thread-12] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-09-26 08:13:19,758] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-09-26 08:13:23,097] [pool-1-thread-2] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-09-26 08:13:26,946] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-09-26 08:13:35,250] [pool-1-thread-10] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] 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base file [testng] [2024-09-26 08:15:35,648] [pool-1-thread-2] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-09-26 08:15:39,537] [pool-1-thread-5] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-09-26 08:15:45,397] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-26 08:15:48,568] [pool-1-thread-4] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-09-26 08:15:52,921] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-09-26 08:16:05,087] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-09-26 08:16:07,864] [pool-1-thread-3] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-09-26 08:16:11,239] [pool-1-thread-2] Initializing /data/alex/Selected FITC.stk: [testng] [2024-09-26 08:16:13,713] [pool-1-thread-5] Initializing 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Confocal_s2_t1.TIF: [testng] [2024-09-26 08:17:22,876] [pool-1-thread-7] Used files list does not include base file [testng] [2024-09-26 08:17:23,848] [pool-1-thread-12] Initializing /data/qa-16915/m-02.tif: [testng] [2024-09-26 08:17:25,980] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-09-26 08:17:27,509] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-09-26 08:17:31,208] [pool-1-thread-2] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-09-26 08:17:36,871] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-09-26 08:17:40,231] [pool-1-thread-4] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-09-26 08:17:43,033] [pool-1-thread-12] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-09-26 08:17:49,326] [pool-1-thread-9] Initializing 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[pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-09-26 08:19:27,063] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-26 08:19:30,796] [pool-1-thread-4] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-09-26 08:19:34,767] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-09-26 08:19:36,449] [pool-1-thread-2] Initializing /data/samples/10xcalib.tif: [testng] [2024-09-26 08:19:43,088] [pool-1-thread-4] Initializing /data/ascb/golgi marker.tif: [testng] [2024-09-26 08:19:44,823] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-09-26 08:19:47,534] [pool-1-thread-2] Initializing /data/qa-16887/m-01.tif: [testng] [2024-09-26 08:19:50,546] [pool-1-thread-12] Initializing 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/data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-09-26 08:20:25,347] [pool-1-thread-12] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-09-26 08:20:27,659] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-26 08:20:28,920] [pool-1-thread-9] Initializing /data/grant/X.STK: [testng] [2024-09-26 08:20:30,141] [pool-1-thread-4] Initializing /data/jae/RGB_s34.tif: [testng] [2024-09-26 08:20:37,907] [pool-1-thread-12] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-09-26 08:20:39,968] [pool-1-thread-3] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-09-26 08:20:42,056] [pool-1-thread-8] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-09-26 08:20:45,919] [pool-1-thread-4] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-09-26 08:20:47,852] [pool-1-thread-10] Initializing /data/samples/zser24.stk: [testng] [2024-09-26 08:20:49,318] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-09-26 08:20:51,258] [pool-1-thread-9] Used files list does not include base file [testng] [2024-09-26 08:20:52,843] [pool-1-thread-3] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-09-26 08:20:55,901] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-09-26 08:20:57,926] [pool-1-thread-8] Used files list does not include base file [testng] [2024-09-26 08:20:58,608] [pool-1-thread-10] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-09-26 08:21:03,602] [pool-1-thread-12] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-09-26 08:21:06,189] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-09-26 08:21:08,060] [pool-1-thread-10] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-09-26 08:21:11,183] [pool-1-thread-7] Initializing /data/samples/zseries.stk: [testng] [2024-09-26 08:21:13,773] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-09-26 08:21:15,222] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-26 08:21:20,904] [pool-1-thread-10] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-09-26 08:21:23,114] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-09-26 08:21:29,657] [pool-1-thread-10] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-09-26 08:21:30,768] [pool-1-thread-7] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-09-26 08:21:31,970] [pool-1-thread-4] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-09-26 08:21:34,317] [pool-1-thread-10] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-09-26 08:21:39,910] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-09-26 08:21:42,684] [pool-1-thread-7] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-09-26 08:21:46,577] [pool-1-thread-12] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-09-26 08:21:50,064] [pool-1-thread-4] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-09-26 08:21:51,444] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-09-26 08:21:56,913] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-09-26 08:22:02,194] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-09-26 08:22:22,267] [pool-1-thread-3] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-09-26 08:22:24,363] [pool-1-thread-4] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-09-26 08:22:30,728] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-09-26 08:22:38,849] [pool-1-thread-7] Initializing /data/steve/Experiment2.tif: [testng] [2024-09-26 08:22:43,237] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-09-26 08:22:46,006] [pool-1-thread-3] Used files list does not include base file [testng] [2024-09-26 08:22:48,983] [pool-1-thread-8] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-09-26 08:22:50,912] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-26 08:22:55,258] [pool-1-thread-7] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-09-26 08:23:07,344] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-09-26 08:23:09,982] [pool-1-thread-8] Used files list does not include base file [testng] [2024-09-26 08:23:23,318] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-09-26 08:23:43,079] [pool-1-thread-7] Initializing /data/thomas/test.tif: [testng] [2024-09-26 08:23:51,992] [pool-1-thread-7] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-09-26 08:24:03,984] [pool-1-thread-8] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-09-26 08:24:09,635] [pool-1-thread-7] Initializing /data/david/tl4.tif: [testng] [2024-09-26 08:24:14,919] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-09-26 08:24:21,777] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-09-26 08:24:26,992] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-09-26 08:24:28,906] [pool-1-thread-7] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-09-26 08:24:32,698] [pool-1-thread-12] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-09-26 08:24:36,334] [pool-1-thread-3] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-09-26 08:24:40,412] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-09-26 08:24:42,192] [pool-1-thread-7] Used files list does not include base file [testng] [2024-09-26 08:24:43,141] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-09-26 08:24:44,633] [pool-1-thread-8] Used files list does not include base file [testng] [2024-09-26 08:24:45,428] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-09-26 08:24:47,600] [pool-1-thread-12] Used files list does not include base file [testng] [2024-09-26 08:24:52,973] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-09-26 08:24:57,709] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-09-26 08:24:59,461] [pool-1-thread-7] Used files list does not include base file [testng] 10:06:37,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 10:06:37,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:06:37,329 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-26_10-06-37.log] [testng] 10:06:37,329 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d834d38 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 144 minutes 14 seconds Finished: SUCCESS