Started by upstream project "BIOFORMATS-test-repo" build number 202
originally caused by:
 Started by upstream project "Trigger" build number 228
 originally caused by:
  Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins3251681588090280313.sh
+ '[' leica-scn = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_32085_merge_ci -v /uod/idr/repos/curated/leica-scn:/data -v /uod/idr-scratch/merge-ci/curated/leica-scn:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 08:14:13,605 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 08:14:13,607 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
   [testng] 08:14:13,607 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 08:14:13,608 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 08:14:13,608 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 08:14:13,608 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 08:14:13,609 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 08:14:13,609 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 08:14:13,609 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 08:14:13,609 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 08:14:13,609 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 08:14:13,610 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 08:14:13,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 08:14:13,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 08:14:13,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 08:14:13,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 08:14:13,871 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 08:14:13,871 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 08:14:13,871 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 08:14:13,871 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 08:14:13,871 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
   [testng] 08:14:13,872 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
   [testng] 08:14:13,872 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 263 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-09-27 08:14:13,882] [main] java.version = 1.8.0_342
   [testng] 08:14:13,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 08:14:13,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:14:13,932 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-27_08-14-13.log]
   [testng] 08:14:13,933 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
   [testng] [2024-09-27 08:14:13,935] [main] testng.directory = /data
   [testng] [2024-09-27 08:14:13,935] [main] testng.configDirectory = /config
   [testng] [2024-09-27 08:14:13,948] [main] testng.multiplier = 1.0
   [testng] [2024-09-27 08:14:13,948] [main] testng.in-memory = false
   [testng] [2024-09-27 08:14:13,948] [main] testng.allow-missing = false
   [testng] [2024-09-27 08:14:13,948] [main] user.language = en
   [testng] [2024-09-27 08:14:13,948] [main] user.country = ${user.country}
   [testng] [2024-09-27 08:14:13,949] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-09-27 08:14:32,999] [main] ----------------------------------------
   [testng] [2024-09-27 08:14:33,000] [main] Total files: 12
   [testng] [2024-09-27 08:14:33,000] [main] Scan time: 19.05 s (1587 ms/file)
   [testng] [2024-09-27 08:14:33,000] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 12 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-09-27 08:14:42,710] [pool-1-thread-1] Initializing /data/qa-11049/HP15.4994_2015-04-28.scn: 
   [testng] 08:14:42,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 08:14:42,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:14:42,711 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-27_08-14-42.log]
   [testng] 08:14:42,711 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42bc7dfc - End of configuration.
   [testng] [2024-09-27 08:14:43,228] [pool-1-thread-12] Initializing /data/qa-17671/132223-12_022a1963-b32e-467f-8242-b51a5295951f.SCN: 
   [testng] 08:14:43,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 08:14:43,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:14:43,230 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-27_08-14-43.log]
   [testng] 08:14:43,230 |-INFO in ch.qos.logback.core.sift.SiftProcessor@241996a0 - End of configuration.
   [testng] [2024-09-27 08:14:43,779] [pool-1-thread-11] Initializing /data/public/openslide/Leica-1/Leica-1.scn: 
   [testng] 08:14:43,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 08:14:43,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:14:43,780 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-27_08-14-43.log]
   [testng] 08:14:43,780 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1710fe8a - End of configuration.
   [testng] [2024-09-27 08:14:44,564] [pool-1-thread-10] Initializing /data/mihaela/UCLAD_0000000280_2011-02-10 13_32_55Z.scn: 
   [testng] 08:14:44,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 08:14:44,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:14:44,565 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-27_08-14-44.log]
   [testng] 08:14:44,565 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6426d8eb - End of configuration.
   [testng] [2024-09-27 08:14:45,437] [pool-1-thread-9] Initializing /data/michael/collection_0000008286_2012-05-23 17_20_46 opened usig LOCI.tif: 
   [testng] 08:14:45,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 08:14:45,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:14:45,437 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-27_08-14-45.log]
   [testng] 08:14:45,438 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46d0f701 - End of configuration.
   [testng] [2024-09-27 08:14:46,643] [pool-1-thread-8] Initializing /data/scott/Oral_Biology_13 (1).scn: 
   [testng] 08:14:46,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 08:14:46,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:14:46,646 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-27_08-14-46.log]
   [testng] 08:14:46,646 |-INFO in ch.qos.logback.core.sift.SiftProcessor@243d8f2a - End of configuration.
   [testng] [2024-09-27 08:14:47,631] [pool-1-thread-7] Initializing /data/public/openslide/Leica-2/Leica-2.scn: 
   [testng] 08:14:47,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 08:14:47,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:14:47,632 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-27_08-14-47.log]
   [testng] 08:14:47,632 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1cc17576 - End of configuration.
   [testng] [2024-09-27 08:14:48,270] [pool-1-thread-6] Initializing /data/michael/collection_0000008286_2012-05-23 17_20_46 fullresolution.jpg: 
   [testng] 08:14:48,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 08:14:48,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:14:48,271 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-27_08-14-48.log]
   [testng] 08:14:48,272 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6088d4b9 - End of configuration.
   [testng] [2024-09-27 08:14:48,397] [pool-1-thread-5] Initializing /data/scott/ImageCollection_0000000418_2010-10-27 13_31_31Z.scn: 
   [testng] 08:14:48,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 08:14:48,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:14:48,398 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-27_08-14-48.log]
   [testng] 08:14:48,398 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ffb239b - End of configuration.
   [testng] [2024-09-27 08:14:48,997] [pool-1-thread-4] Initializing /data/qa-10469/Slide_907790L_DAPI_Ki67.scn: 
   [testng] 08:14:48,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 08:14:48,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:14:48,998 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-27_08-14-48.log]
   [testng] 08:14:48,998 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12e39121 - End of configuration.
   [testng] [2024-09-27 08:14:49,642] [pool-1-thread-3] Initializing /data/public/openslide/Leica-3/Leica-3.scn: 
   [testng] 08:14:49,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 08:14:49,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:14:49,643 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-27_08-14-49.log]
   [testng] 08:14:49,643 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3dd02387 - End of configuration.
   [testng] [2024-09-27 08:14:50,242] [pool-1-thread-2] Initializing /data/michael/collection_0000008286_2012-05-23 17_20_46.scn: 
   [testng] 08:14:50,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 08:14:50,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:14:50,242 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-27_08-14-50.log]
   [testng] 08:14:50,243 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d7a62a6 - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 636, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 1 minute 59 seconds
Finished: SUCCESS