Started by upstream project "BIOFORMATS-test-repo" build number 203
originally caused by:
Started by upstream project "Trigger" build number 229
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins13221417282494221426.sh
+ '[' specs = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_32151_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 01:27:40,528 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:27:40,530 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
[testng] 01:27:40,530 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:27:40,531 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:27:40,531 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:27:40,532 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:27:40,532 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:27:40,532 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:27:40,533 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:27:40,533 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:27:40,534 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:27:40,534 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:27:40,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:27:40,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:27:40,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:27:40,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:27:40,738 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:27:40,738 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:27:40,738 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:27:40,739 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:27:40,739 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
[testng] 01:27:40,740 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
[testng] 01:27:40,740 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 207 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-09-28 01:27:40,749] [main] java.version = 11.0.16
[testng] 01:27:40,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:27:40,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:40,796 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-28_01-27-40.log]
[testng] 01:27:40,798 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-09-28 01:27:40,801] [main] testng.directory = /data
[testng] [2024-09-28 01:27:40,801] [main] testng.configDirectory = /config
[testng] [2024-09-28 01:27:40,811] [main] testng.multiplier = 1.0
[testng] [2024-09-28 01:27:40,813] [main] testng.in-memory = false
[testng] [2024-09-28 01:27:40,813] [main] testng.allow-missing = false
[testng] [2024-09-28 01:27:40,813] [main] user.language = en
[testng] [2024-09-28 01:27:40,813] [main] user.country = ${user.country}
[testng] [2024-09-28 01:27:40,813] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-09-28 01:29:40,215] [main] ----------------------------------------
[testng] [2024-09-28 01:29:40,215] [main] Total files: 226
[testng] [2024-09-28 01:29:40,215] [main] Scan time: 119.402 s (528 ms/file)
[testng] [2024-09-28 01:29:40,215] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 28 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-09-28 01:31:00,281] [pool-1-thread-1] Initializing /data/fluoview/Sample_ThreeCH.TIF:
[testng] 01:31:00,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:31:00,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:00,284 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-28_01-31-00.log]
[testng] 01:31:00,284 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48784042 - End of configuration.
[testng] [2024-09-28 01:31:00,733] [pool-1-thread-12] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm:
[testng] 01:31:00,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:31:00,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:00,735 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-28_01-31-00.log]
[testng] 01:31:00,735 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cd1cbcc - End of configuration.
[testng] [2024-09-28 01:31:01,090] [pool-1-thread-11] Initializing /data/iplab/Color Image.IPL:
[testng] 01:31:01,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:31:01,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:01,091 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-28_01-31-01.log]
[testng] 01:31:01,092 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5da983cb - End of configuration.
[testng] [2024-09-28 01:31:01,145] [pool-1-thread-10] Initializing /data/iplab/10x Blood and Bacteria.IPL:
[testng] 01:31:01,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:31:01,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:01,146 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-28_01-31-01.log]
[testng] 01:31:01,146 |-INFO in ch.qos.logback.core.sift.SiftProcessor@481ffd45 - End of configuration.
[testng] [2024-09-28 01:31:01,220] [pool-1-thread-9] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3:
[testng] 01:31:01,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:31:01,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:01,221 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-28_01-31-01.log]
[testng] 01:31:01,222 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3aa5f15a - End of configuration.
[testng] [2024-09-28 01:31:01,272] [pool-1-thread-8] Initializing /data/iplab/Actin.IPL:
[testng] 01:31:01,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:31:01,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:01,273 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-28_01-31-01.log]
[testng] 01:31:01,274 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61ae5508 - End of configuration.
[testng] [2024-09-28 01:31:01,321] [pool-1-thread-7] Initializing /data/iplab/Chromosomes.IPL:
[testng] 01:31:01,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:31:01,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:01,322 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-28_01-31-01.log]
[testng] 01:31:01,322 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73486367 - End of configuration.
[testng] [2024-09-28 01:31:01,365] [pool-1-thread-6] Initializing /data/fluoview/Sample_TwoCH.TIF:
[testng] 01:31:01,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:31:01,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:01,366 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-28_01-31-01.log]
[testng] 01:31:01,366 |-INFO in ch.qos.logback.core.sift.SiftProcessor@771d1763 - End of configuration.
[testng] [2024-09-28 01:31:01,581] [pool-1-thread-5] Initializing /data/fluoview/sample_labled_XYZCh.tif:
[testng] 01:31:01,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:31:01,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:01,582 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-28_01-31-01.log]
[testng] 01:31:01,582 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61c43608 - End of configuration.
[testng] [2024-09-28 01:31:01,827] [pool-1-thread-4] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm:
[testng] 01:31:01,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:31:01,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:01,828 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-28_01-31-01.log]
[testng] 01:31:01,828 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ddb6886 - End of configuration.
[testng] [2024-09-28 01:31:02,078] [pool-1-thread-3] Initializing /data/iplab/Color Histology.IPL:
[testng] 01:31:02,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:31:02,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:02,079 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-28_01-31-02.log]
[testng] 01:31:02,079 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45569f3 - End of configuration.
[testng] [2024-09-28 01:31:02,119] [pool-1-thread-2] Initializing /data/fluoview/Sample_XYZ.TIF:
[testng] 01:31:02,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:31:02,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:02,120 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-28_01-31-02.log]
[testng] 01:31:02,120 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b1e2e18 - End of configuration.
[testng] [2024-09-28 01:31:04,411] [pool-1-thread-8] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm:
[testng] [2024-09-28 01:31:04,777] [pool-1-thread-3] Initializing /data/fluoview/sample_labled_XYZTCh.tif:
[testng] [2024-09-28 01:31:05,171] [pool-1-thread-11] Initializing /data/iplab/Blend_DIC.IPL:
[testng] [2024-09-28 01:31:05,228] [pool-1-thread-7] Initializing /data/fluoview/SpineAnimation.avi:
[testng] [2024-09-28 01:31:05,359] [pool-1-thread-9] Initializing /data/iplab/16Bit XRay.IPL:
[testng] [2024-09-28 01:31:05,419] [pool-1-thread-10] Initializing /data/iplab/Blend_Final.IPL:
[testng] [2024-09-28 01:31:06,232] [pool-1-thread-1] Initializing /data/iplab/Blend_Tritc.IPL:
[testng] [2024-09-28 01:31:06,432] [pool-1-thread-2] Initializing /data/fluoview/SpineAnimation.tif:
[testng] [2024-09-28 01:31:06,835] [pool-1-thread-5] Initializing /data/fluoview/Sample_XYT.TIF:
[testng] [2024-09-28 01:31:07,363] [pool-1-thread-9] Initializing /data/fluoview/Sample_XT.tif:
[testng] [2024-09-28 01:31:07,827] [pool-1-thread-6] Initializing /data/fluoview/sample_labled_XYTCh.tif:
[testng] [2024-09-28 01:31:08,425] [pool-1-thread-10] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3:
[testng] [2024-09-28 01:31:08,605] [pool-1-thread-11] Initializing /data/iplab/Blend_Fitc.IPL:
[testng] [2024-09-28 01:31:09,045] [pool-1-thread-1] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3:
[testng] [2024-09-28 01:31:09,261] [pool-1-thread-7] Initializing /data/iplab/Blend_Dapi.IPL:
[testng] [2024-09-28 01:31:09,405] [pool-1-thread-3] Initializing /data/iplab/3t3 Cell.IPL:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1484, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 3 minutes 36 seconds
Finished: SUCCESS