Started by upstream project "BIOFORMATS-test-repo" build number 203
originally caused by:
Started by upstream project "Trigger" build number 229
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins15666181980234399049.sh
+ '[' imagepro = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_32282_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 04:42:47,728 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 04:42:47,729 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
[testng] 04:42:47,730 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:42:47,731 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:42:47,731 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 04:42:47,731 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 04:42:47,732 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 04:42:47,732 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:42:47,732 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:42:47,733 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 04:42:47,733 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 04:42:47,733 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 04:42:47,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 04:42:47,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 04:42:47,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 04:42:47,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 04:42:47,932 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 04:42:47,932 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 04:42:47,933 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 04:42:47,933 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 04:42:47,933 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
[testng] 04:42:47,934 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
[testng] 04:42:47,934 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 202 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-09-28 04:42:47,943] [main] java.version = 11.0.16
[testng] 04:42:47,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 04:42:47,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:42:47,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-28_04-42-47.log]
[testng] 04:42:47,991 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-09-28 04:42:47,993] [main] testng.directory = /data
[testng] [2024-09-28 04:42:47,993] [main] testng.configDirectory = /config
[testng] [2024-09-28 04:42:48,003] [main] testng.multiplier = 1.0
[testng] [2024-09-28 04:42:48,004] [main] testng.in-memory = false
[testng] [2024-09-28 04:42:48,004] [main] testng.allow-missing = false
[testng] [2024-09-28 04:42:48,004] [main] user.language = en
[testng] [2024-09-28 04:42:48,004] [main] user.country = ${user.country}
[testng] [2024-09-28 04:42:48,004] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-09-28 04:42:52,260] [main] ----------------------------------------
[testng] [2024-09-28 04:42:52,260] [main] Total files: 22
[testng] [2024-09-28 04:42:52,260] [main] Scan time: 4.256 s (193 ms/file)
[testng] [2024-09-28 04:42:52,260] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-09-28 04:43:08,010] [pool-1-thread-1] Initializing /data/converted/dub01.pic:
[testng] 04:43:08,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 04:43:08,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:43:08,012 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-28_04-43-08.log]
[testng] 04:43:08,013 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6889a2f2 - End of configuration.
[testng] [2024-09-28 04:43:08,402] [pool-1-thread-12] Initializing /data/converted/clown8c.tif:
[testng] 04:43:08,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 04:43:08,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:43:08,403 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-28_04-43-08.log]
[testng] 04:43:08,404 |-INFO in ch.qos.logback.core.sift.SiftProcessor@734a842 - End of configuration.
[testng] [2024-09-28 04:43:09,311] [pool-1-thread-11] Initializing /data/converted/clown.ipw:
[testng] 04:43:09,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 04:43:09,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:43:09,312 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-28_04-43-09.log]
[testng] 04:43:09,312 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20abc31a - End of configuration.
[testng] [2024-09-28 04:43:09,693] [pool-1-thread-10] Initializing /data/samples/HEART.SEQ:
[testng] 04:43:09,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 04:43:09,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:43:09,693 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-28_04-43-09.log]
[testng] 04:43:09,694 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33263f65 - End of configuration.
[testng] [2024-09-28 04:43:10,197] [pool-1-thread-9] Initializing /data/converted/mitosis-test.ipw:
[testng] 04:43:10,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 04:43:10,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:43:10,198 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-28_04-43-10.log]
[testng] 04:43:10,198 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23e509e5 - End of configuration.
[testng] [2024-09-28 04:43:10,557] [pool-1-thread-8] Initializing /data/converted/dub01.seq:
[testng] 04:43:10,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 04:43:10,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:43:10,557 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-28_04-43-10.log]
[testng] 04:43:10,558 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e3e8604 - End of configuration.
[testng] [2024-09-28 04:43:10,975] [pool-1-thread-7] Initializing /data/alex/AFAset0003.ips:
[testng] 04:43:10,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 04:43:10,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:43:10,976 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-28_04-43-10.log]
[testng] 04:43:10,976 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69a167a3 - End of configuration.
[testng] [2024-09-28 04:43:11,384] [pool-1-thread-6] Initializing /data/converted/clown.tif:
[testng] 04:43:11,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 04:43:11,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:43:11,385 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-28_04-43-11.log]
[testng] 04:43:11,386 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39455cc8 - End of configuration.
[testng] [2024-09-28 04:43:11,860] [pool-1-thread-5] Initializing /data/xiuwen/head2.seq:
[testng] 04:43:11,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 04:43:11,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:43:11,861 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-28_04-43-11.log]
[testng] 04:43:11,861 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14a5bd6b - End of configuration.
[testng] [2024-09-28 04:43:12,325] [pool-1-thread-4] Initializing /data/converted/NESb_C2_TP7.ipw:
[testng] 04:43:12,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 04:43:12,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:43:12,326 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-28_04-43-12.log]
[testng] 04:43:12,326 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c0015ab - End of configuration.
[testng] [2024-09-28 04:43:12,736] [pool-1-thread-3] Initializing /data/samples/FLDUAL.TIF:
[testng] 04:43:12,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 04:43:12,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:43:12,737 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-28_04-43-12.log]
[testng] 04:43:12,737 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68b2cb6d - End of configuration.
[testng] [2024-09-28 04:43:13,673] [pool-1-thread-2] Initializing /data/samples/TISSUE.TIF:
[testng] 04:43:13,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 04:43:13,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:43:13,674 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-28_04-43-13.log]
[testng] 04:43:13,674 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61d952ca - End of configuration.
[testng] [2024-09-28 04:43:19,304] [pool-1-thread-6] Initializing /data/converted/NESb_C2_TP7.seq:
[testng] [2024-09-28 04:43:19,651] [pool-1-thread-11] Initializing /data/converted/clown8c.seq:
[testng] [2024-09-28 04:43:19,954] [pool-1-thread-9] Initializing /data/samples/PROBE.TIF:
[testng] [2024-09-28 04:43:20,308] [pool-1-thread-1] Initializing /data/converted/NESb_C2_TP7.tiff:
[testng] [2024-09-28 04:43:21,189] [pool-1-thread-8] Initializing /data/converted/mitosis-test.seq:
[testng] [2024-09-28 04:43:21,571] [pool-1-thread-10] Initializing /data/converted/dub01.ipw:
[testng] [2024-09-28 04:43:21,922] [pool-1-thread-4] Initializing /data/converted/clown.seq:
[testng] [2024-09-28 04:43:22,339] [pool-1-thread-12] Initializing /data/converted/mitosis-test.tif:
[testng] [2024-09-28 04:43:23,422] [pool-1-thread-3] Initializing /data/converted/clown8c.ipw:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 2 minutes 41 seconds
Finished: SUCCESS