Started by upstream project "BIOFORMATS-test-repo" build number 3
originally caused by:
 Started by upstream project "Trigger" build number 4
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins12813313047559034985.sh
+ '[' bmp = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_323_merge_ci -v /uod/idr/repos/curated/bmp:/data -v /uod/idr-scratch/merge-ci/curated/bmp:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 00:23:31,761 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 00:23:31,763 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
   [testng] 00:23:31,763 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 00:23:31,765 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 00:23:31,765 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 00:23:31,766 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 00:23:31,766 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 00:23:31,766 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 00:23:31,767 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 00:23:31,767 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 00:23:31,768 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 00:23:31,768 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 00:23:31,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 00:23:31,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 00:23:31,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 00:23:31,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 00:23:31,976 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 00:23:31,976 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 00:23:31,976 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 00:23:31,977 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 00:23:31,977 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
   [testng] 00:23:31,978 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
   [testng] 00:23:31,978 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 211 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-03-16 00:23:31,987] [main] java.version = 11.0.16
   [testng] 00:23:31,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 00:23:31,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:23:32,032 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-16_00-23-32.log]
   [testng] 00:23:32,034 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
   [testng] [2024-03-16 00:23:32,036] [main] testng.directory = /data
   [testng] [2024-03-16 00:23:32,036] [main] testng.configDirectory = /config
   [testng] [2024-03-16 00:23:32,049] [main] testng.multiplier = 1.0
   [testng] [2024-03-16 00:23:32,051] [main] testng.in-memory = false
   [testng] [2024-03-16 00:23:32,051] [main] testng.allow-missing = false
   [testng] [2024-03-16 00:23:32,051] [main] user.language = en
   [testng] [2024-03-16 00:23:32,051] [main] user.country = ${user.country}
   [testng] [2024-03-16 00:23:32,051] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-03-16 00:23:32,470] [main] ----------------------------------------
   [testng] [2024-03-16 00:23:32,470] [main] Total files: 31
   [testng] [2024-03-16 00:23:32,470] [main] Scan time: 0.419 s (13 ms/file)
   [testng] [2024-03-16 00:23:32,470] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 31 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-03-16 00:23:35,794] [pool-1-thread-1] Initializing /data/curtis/image2.bmp: 
   [testng] 00:23:35,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 00:23:35,795 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:23:35,796 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-16_00-23-35.log]
   [testng] 00:23:35,797 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e290cb7 - End of configuration.
   [testng] [2024-03-16 00:23:35,832] [pool-1-thread-12] Initializing /data/brian/images/DMSOHigh_001.bmp: 
   [testng] 00:23:35,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 00:23:35,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:23:35,833 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-16_00-23-35.log]
   [testng] 00:23:35,834 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a8c1497 - End of configuration.
   [testng] [2024-03-16 00:23:35,873] [pool-1-thread-11] Initializing /data/bk/ch_00.bmp: 
   [testng] 00:23:35,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 00:23:35,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:23:35,874 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-16_00-23-35.log]
   [testng] 00:23:35,875 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f8b5644 - End of configuration.
   [testng] [2024-03-16 00:23:35,912] [pool-1-thread-10] Initializing /data/ticket-12971/foo.bmp: 
   [testng] 00:23:35,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 00:23:35,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:23:35,913 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-16_00-23-35.log]
   [testng] 00:23:35,913 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f366e60 - End of configuration.
   [testng] [2024-03-16 00:23:35,941] [pool-1-thread-9] Initializing /data/dennis/kidney_TFl_Three.bmp: 
   [testng] 00:23:35,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 00:23:35,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:23:35,942 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-16_00-23-35.log]
   [testng] 00:23:35,942 |-INFO in ch.qos.logback.core.sift.SiftProcessor@757a484 - End of configuration.
   [testng] [2024-03-16 00:23:35,970] [pool-1-thread-8] Initializing /data/big-images/6kx6k.bmp: 
   [testng] 00:23:35,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 00:23:35,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:23:35,971 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-16_00-23-35.log]
   [testng] 00:23:35,972 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1605c515 - End of configuration.
   [testng] [2024-03-16 00:23:36,001] [pool-1-thread-7] Initializing /data/curtis/image1.bmp: 
   [testng] 00:23:36,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 00:23:36,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:23:36,002 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-16_00-23-36.log]
   [testng] 00:23:36,002 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d7c47b3 - End of configuration.
   [testng] [2024-03-16 00:23:36,061] [pool-1-thread-6] Initializing /data/brian/images/kidney_TFl_1.bmp: 
   [testng] 00:23:36,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 00:23:36,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:23:36,062 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-16_00-23-36.log]
   [testng] 00:23:36,062 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e7629f9 - End of configuration.
   [testng] [2024-03-16 00:23:36,092] [pool-1-thread-5] Initializing /data/dennis/kidney_TFl_Two.bmp: 
   [testng] 00:23:36,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 00:23:36,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:23:36,094 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-16_00-23-36.log]
   [testng] 00:23:36,094 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3054a5d - End of configuration.
   [testng] [2024-03-16 00:23:36,124] [pool-1-thread-4] Initializing /data/curtis/image3.bmp: 
   [testng] 00:23:36,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 00:23:36,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:23:36,125 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-16_00-23-36.log]
   [testng] 00:23:36,125 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b21aae6 - End of configuration.
   [testng] [2024-03-16 00:23:36,152] [pool-1-thread-3] Initializing /data/brian/images/raw_a_rg.tiff: 
   [testng] 00:23:36,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 00:23:36,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:23:36,154 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-16_00-23-36.log]
   [testng] 00:23:36,154 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17b2dc67 - End of configuration.
   [testng] [2024-03-16 00:23:36,455] [pool-1-thread-2] Initializing /data/dennis/kidney_TFl_Four.bmp: 
   [testng] 00:23:36,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 00:23:36,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:23:36,456 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-16_00-23-36.log]
   [testng] 00:23:36,456 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74a72623 - End of configuration.
   [testng] [2024-03-16 00:23:38,605] [pool-1-thread-10] Initializing /data/dennis/kidney_TFl_Seven.bmp: 
   [testng] [2024-03-16 00:23:38,635] [pool-1-thread-4] Initializing /data/brian/images/raw_a_rg.bmp: 
   [testng] [2024-03-16 00:23:38,663] [pool-1-thread-1] Initializing /data/dennis/kidney_TFl_One.bmp: 
   [testng] [2024-03-16 00:23:38,689] [pool-1-thread-7] Initializing /data/curtis/image5.bmp: 
   [testng] [2024-03-16 00:23:38,713] [pool-1-thread-9] Initializing /data/dennis/kidney_TFl_Five.bmp: 
   [testng] [2024-03-16 00:23:38,740] [pool-1-thread-6] Initializing /data/qa-4538/22577136_Figure 2_A_ATF6 (GST)_13572.bmp: 
   [testng] [2024-03-16 00:23:38,767] [pool-1-thread-2] Initializing /data/dennis/kidney_TFl_Six.bmp: 
   [testng] [2024-03-16 00:23:38,792] [pool-1-thread-5] Initializing /data/stephane/holo0908.bmp: 
   [testng] [2024-03-16 00:23:38,813] [pool-1-thread-12] Initializing /data/frank/cell_mask_error.bmp: 
   [testng] [2024-03-16 00:23:39,179] [pool-1-thread-11] Initializing /data/big-images/8kx8k-grey.bmp: 
   [testng] [2024-03-16 00:23:39,380] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_Nine.bmp: 
   [testng] [2024-03-16 00:23:39,691] [pool-1-thread-7] Initializing /data/bk/100427RBTLPC_FD3__A___5_T_001_ch_00_image_00025_Z_001.bmp: 
   [testng] [2024-03-16 00:23:39,966] [pool-1-thread-4] Initializing /data/brian/images/kidney_TFl_1_greyscale.bmp: 
   [testng] [2024-03-16 00:23:39,990] [pool-1-thread-10] Initializing /data/big-images/6kx6k-grey.bmp: 
   [testng] [2024-03-16 00:23:40,016] [pool-1-thread-9] Initializing /data/brian/images/raw_a.bmp: 
   [testng] [2024-03-16 00:23:40,036] [pool-1-thread-12] Initializing /data/big-images/8kx8k.bmp: 
   [testng] [2024-03-16 00:23:40,285] [pool-1-thread-1] Initializing /data/curtis/image4.bmp: 
   [testng] [2024-03-16 00:23:40,312] [pool-1-thread-2] Initializing /data/brian/images/23srp5dksub.bmp: 
   [testng] [2024-03-16 00:23:40,463] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_Eight.bmp: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1643, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 38 seconds
Finished: SUCCESS