Started by upstream project "BIOFORMATS-test-repo" build number 25
originally caused by:
 Started by upstream project "Trigger" build number 28
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins4578117123701835719.sh
+ '[' nifti = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_3237_merge_ci -v /uod/idr/repos/curated/nifti:/data -v /uod/idr-scratch/merge-ci/curated/nifti:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 02:44:53,818 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 02:44:53,820 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
   [testng] 02:44:53,820 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:44:53,821 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:44:53,822 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 02:44:53,822 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 02:44:53,822 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 02:44:53,822 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:44:53,823 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:44:53,823 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 02:44:53,824 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 02:44:53,824 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 02:44:53,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:44:53,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:44:54,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:44:54,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:44:54,020 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:44:54,020 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:44:54,020 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:44:54,021 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:44:54,021 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
   [testng] 02:44:54,022 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
   [testng] 02:44:54,022 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 199 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-04-06 02:44:54,031] [main] java.version = 11.0.16
   [testng] 02:44:54,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:44:54,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:44:54,077 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-06_02-44-54.log]
   [testng] 02:44:54,078 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
   [testng] [2024-04-06 02:44:54,080] [main] testng.directory = /data
   [testng] [2024-04-06 02:44:54,080] [main] testng.configDirectory = /config
   [testng] [2024-04-06 02:44:54,091] [main] testng.multiplier = 1.0
   [testng] [2024-04-06 02:44:54,092] [main] testng.in-memory = false
   [testng] [2024-04-06 02:44:54,092] [main] testng.allow-missing = false
   [testng] [2024-04-06 02:44:54,092] [main] user.language = en
   [testng] [2024-04-06 02:44:54,092] [main] user.country = ${user.country}
   [testng] [2024-04-06 02:44:54,092] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-04-06 02:44:54,910] [main] ----------------------------------------
   [testng] [2024-04-06 02:44:54,910] [main] Total files: 23
   [testng] [2024-04-06 02:44:54,910] [main] Scan time: 0.818 s (35 ms/file)
   [testng] [2024-04-06 02:44:54,910] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 20 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-04-06 02:44:59,385] [pool-1-thread-1] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_26_conf_91.hdr: 
   [testng] 02:44:59,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:44:59,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:44:59,387 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-06_02-44-59.log]
   [testng] 02:44:59,388 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c499d7f - End of configuration.
   [testng] [2024-04-06 02:44:59,407] [pool-1-thread-12] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_25_conf_94.hdr: 
   [testng] 02:44:59,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:44:59,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:44:59,409 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-06_02-44-59.log]
   [testng] 02:44:59,409 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18c727d1 - End of configuration.
   [testng] [2024-04-06 02:44:59,423] [pool-1-thread-11] Initializing /data/qa-17334/volume4d.nii: 
   [testng] 02:44:59,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:44:59,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:44:59,424 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-06_02-44-59.log]
   [testng] 02:44:59,424 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fe3cc93 - End of configuration.
   [testng] [2024-04-06 02:44:59,450] [pool-1-thread-10] Initializing /data/public/NIH/newsirp_final_XML.nii: 
   [testng] 02:44:59,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:44:59,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:44:59,452 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-06_02-44-59.log]
   [testng] 02:44:59,452 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fa7a861 - End of configuration.
   [testng] [2024-04-06 02:44:59,479] [pool-1-thread-9] Initializing /data/public/NIH/avg152T1_LR_nifti.nii.gz: 
   [testng] 02:44:59,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:44:59,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:44:59,480 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-06_02-44-59.log]
   [testng] 02:44:59,480 |-INFO in ch.qos.logback.core.sift.SiftProcessor@222cd6d0 - End of configuration.
   [testng] [2024-04-06 02:44:59,655] [pool-1-thread-8] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_28_conf_100.hdr: 
   [testng] 02:44:59,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:44:59,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:44:59,656 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-06_02-44-59.log]
   [testng] 02:44:59,656 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72adcbcc - End of configuration.
   [testng] [2024-04-06 02:44:59,668] [pool-1-thread-7] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_27_conf_86.hdr: 
   [testng] 02:44:59,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:44:59,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:44:59,669 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-06_02-44-59.log]
   [testng] 02:44:59,669 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b6ce14c - End of configuration.
   [testng] [2024-04-06 02:44:59,680] [pool-1-thread-6] Initializing /data/public/NIH/avg152T1_RL_nifti.nii.gz: 
   [testng] 02:44:59,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:44:59,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:44:59,681 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-06_02-44-59.log]
   [testng] 02:44:59,681 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d31efcc - End of configuration.
   [testng] [2024-04-06 02:44:59,877] [pool-1-thread-5] Initializing /data/public/NIH/minimal.hdr: 
   [testng] 02:44:59,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:44:59,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:44:59,878 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-06_02-44-59.log]
   [testng] 02:44:59,878 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47b8db84 - End of configuration.
   [testng] [2024-04-06 02:44:59,890] [pool-1-thread-4] Initializing /data/public/NIH/avg152T1_RL_nifti.nii: 
   [testng] 02:44:59,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:44:59,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:44:59,891 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-06_02-44-59.log]
   [testng] 02:44:59,891 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12af3fe6 - End of configuration.
   [testng] [2024-04-06 02:44:59,915] [pool-1-thread-3] Initializing /data/public/NIH/avg152T1_LR_nifti.nii: 
   [testng] 02:44:59,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:44:59,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:44:59,916 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-06_02-44-59.log]
   [testng] 02:44:59,916 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6323a76a - End of configuration.
   [testng] [2024-04-06 02:44:59,941] [pool-1-thread-2] Initializing /data/public/NIH/zstat1.nii: 
   [testng] 02:44:59,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:44:59,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:44:59,941 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-06_02-44-59.log]
   [testng] 02:44:59,942 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c320cb1 - End of configuration.
   [testng] [2024-04-06 02:45:01,568] [pool-1-thread-5] Initializing /data/public/NIH/avg152T1_LR_nifti.hdr: 
   [testng] [2024-04-06 02:45:01,580] [pool-1-thread-1] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_25_conf_100.hdr: 
   [testng] [2024-04-06 02:45:01,591] [pool-1-thread-12] Initializing /data/public/NIH/minimal.nii: 
   [testng] [2024-04-06 02:45:01,602] [pool-1-thread-4] Initializing /data/public/NIH/avg152T1_RL_nifti.hdr: 
   [testng] [2024-04-06 02:45:01,612] [pool-1-thread-2] Initializing /data/public/NIH/zstat1.nii.gz: 
   [testng] [2024-04-06 02:45:01,670] [pool-1-thread-3] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_28_conf_94.hdr: 
   [testng] [2024-04-06 02:45:01,682] [pool-1-thread-11] Initializing /data/public/NIH/filtered_func_data.nii: 
   [testng] [2024-04-06 02:45:01,699] [pool-1-thread-10] Initializing /data/public/NIH/filtered_func_data.nii.gz: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1060, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 40 seconds
Finished: SUCCESS