Started by upstream project "BIOFORMATS-test-repo" build number 25
originally caused by:
 Started by upstream project "Trigger" build number 28
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins14258828445189855071.sh
+ '[' obf = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_3240_merge_ci -v /uod/idr/repos/curated/obf:/data -v /uod/idr-scratch/merge-ci/curated/obf:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 02:45:42,171 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 02:45:42,173 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
   [testng] 02:45:42,173 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:45:42,174 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:45:42,175 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 02:45:42,175 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 02:45:42,175 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 02:45:42,175 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:45:42,176 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:45:42,176 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 02:45:42,177 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 02:45:42,177 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 02:45:42,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:45:42,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:45:42,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:45:42,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:45:42,378 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:45:42,378 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:45:42,378 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:45:42,379 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:45:42,379 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
   [testng] 02:45:42,380 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
   [testng] 02:45:42,380 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 204 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-04-06 02:45:42,388] [main] java.version = 11.0.16
   [testng] 02:45:42,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:45:42,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:42,492 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-06_02-45-42.log]
   [testng] 02:45:42,493 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
   [testng] [2024-04-06 02:45:42,495] [main] testng.directory = /data
   [testng] [2024-04-06 02:45:42,496] [main] testng.configDirectory = /config
   [testng] [2024-04-06 02:45:42,505] [main] testng.multiplier = 1.0
   [testng] [2024-04-06 02:45:42,507] [main] testng.in-memory = false
   [testng] [2024-04-06 02:45:42,507] [main] testng.allow-missing = false
   [testng] [2024-04-06 02:45:42,507] [main] user.language = en
   [testng] [2024-04-06 02:45:42,507] [main] user.country = ${user.country}
   [testng] [2024-04-06 02:45:42,507] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-04-06 02:45:44,319] [main] ----------------------------------------
   [testng] [2024-04-06 02:45:44,319] [main] Total files: 12
   [testng] [2024-04-06 02:45:44,319] [main] Scan time: 1.812 s (151 ms/file)
   [testng] [2024-04-06 02:45:44,319] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 11 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-04-06 02:45:49,728] [pool-1-thread-1] Initializing /data/public/ngladitz/v4/test-v4-uncompressed.obf: 
   [testng] 02:45:49,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:45:49,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:49,730 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-06_02-45-49.log]
   [testng] 02:45:49,731 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77b0b1 - End of configuration.
   [testng] [2024-04-06 02:45:49,993] [pool-1-thread-11] Initializing /data/public/ngladitz/v6/test-v6-uncompressed.obf: 
   [testng] 02:45:49,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:45:49,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:49,995 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-06_02-45-49.log]
   [testng] 02:45:49,995 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e2588c6 - End of configuration.
   [testng] [2024-04-06 02:45:50,644] [pool-1-thread-10] Initializing /data/bjoernthiel/20191106__zstack.msr: 
   [testng] 02:45:50,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:45:50,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:50,646 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-06_02-45-50.log]
   [testng] 02:45:50,647 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f2626ba - End of configuration.
   [testng] [2024-04-06 02:45:50,804] [pool-1-thread-9] Initializing /data/qa-27923/test.obf: 
   [testng] 02:45:50,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:45:50,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:50,805 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-06_02-45-50.log]
   [testng] 02:45:50,805 |-INFO in ch.qos.logback.core.sift.SiftProcessor@adc44e0 - End of configuration.
   [testng] [2024-04-06 02:45:50,859] [pool-1-thread-8] Initializing /data/qa-16895/Measurement1.msr: 
   [testng] 02:45:50,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:45:50,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:50,860 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-06_02-45-50.log]
   [testng] 02:45:50,860 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a464f7c - End of configuration.
   [testng] [2024-04-06 02:45:50,923] [pool-1-thread-7] Initializing /data/zoltan/3D-CONFOCAL-PSF-235nm.msr: 
   [testng] 02:45:50,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:45:50,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:50,924 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-06_02-45-50.log]
   [testng] 02:45:50,924 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e0bf920 - End of configuration.
   [testng] [2024-04-06 02:45:50,969] [pool-1-thread-6] Initializing /data/qa-17111/before 1.msr: 
   [testng] 02:45:50,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:45:50,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:50,969 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-06_02-45-50.log]
   [testng] 02:45:50,970 |-INFO in ch.qos.logback.core.sift.SiftProcessor@306dd55 - End of configuration.
   [testng] [2024-04-06 02:45:51,890] [pool-1-thread-5] Initializing /data/public/ngladitz/v6/test-v6.obf: 
   [testng] 02:45:51,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:45:51,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:51,891 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-06_02-45-51.log]
   [testng] 02:45:51,892 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b0dbf71 - End of configuration.
   [testng] [2024-04-06 02:45:52,284] [pool-1-thread-4] Initializing /data/tristan/Example_Chrimson_Beads_40nm.msr: 
   [testng] 02:45:52,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:45:52,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:52,285 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-06_02-45-52.log]
   [testng] 02:45:52,285 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19aca356 - End of configuration.
   [testng] [2024-04-06 02:45:52,328] [pool-1-thread-3] Initializing /data/public/ngladitz/v6/test-v6-short-write.obf: 
   [testng] 02:45:52,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:45:52,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:52,329 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-06_02-45-52.log]
   [testng] 02:45:52,330 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d37faef - End of configuration.
   [testng] [2024-04-06 02:45:52,418] [pool-1-thread-2] Initializing /data/public/ngladitz/v4/test-v4.obf: 
   [testng] 02:45:52,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:45:52,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:52,419 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-06_02-45-52.log]
   [testng] 02:45:52,419 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59341275 - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 583, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 40 seconds
Finished: SUCCESS