Started by upstream project "BIOFORMATS-test-repo" build number 3
originally caused by:
Started by upstream project "Trigger" build number 4
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins8250185594568169450.sh
+ '[' specs = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_325_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 00:25:23,418 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:25:23,420 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
[testng] 00:25:23,420 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:25:23,421 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:25:23,422 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:25:23,422 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:25:23,422 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:25:23,422 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:25:23,423 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:25:23,424 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:25:23,424 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:25:23,424 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:25:23,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:25:23,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:25:23,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:25:23,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:25:23,667 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:25:23,667 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:25:23,668 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:25:23,668 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:25:23,668 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
[testng] 00:25:23,669 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
[testng] 00:25:23,669 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 246 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-03-16 00:25:23,682] [main] java.version = 11.0.16
[testng] 00:25:23,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:25:23,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:23,728 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-16_00-25-23.log]
[testng] 00:25:23,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-03-16 00:25:23,732] [main] testng.directory = /data
[testng] [2024-03-16 00:25:23,732] [main] testng.configDirectory = /config
[testng] [2024-03-16 00:25:23,742] [main] testng.multiplier = 1.0
[testng] [2024-03-16 00:25:23,743] [main] testng.in-memory = false
[testng] [2024-03-16 00:25:23,743] [main] testng.allow-missing = false
[testng] [2024-03-16 00:25:23,743] [main] user.language = en
[testng] [2024-03-16 00:25:23,743] [main] user.country = ${user.country}
[testng] [2024-03-16 00:25:23,743] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-03-16 00:26:04,083] [main] ----------------------------------------
[testng] [2024-03-16 00:26:04,083] [main] Total files: 226
[testng] [2024-03-16 00:26:04,084] [main] Scan time: 40.34 s (178 ms/file)
[testng] [2024-03-16 00:26:04,084] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 28 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-03-16 00:27:06,862] [pool-1-thread-1] Initializing /data/fluoview/Sample_XYZ.TIF:
[testng] 00:27:06,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:27:06,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:06,867 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-16_00-27-06.log]
[testng] 00:27:06,868 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38e2f593 - End of configuration.
[testng] [2024-03-16 00:27:07,134] [pool-1-thread-12] Initializing /data/iplab/Color Histology.IPL:
[testng] 00:27:07,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:27:07,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:07,136 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-16_00-27-07.log]
[testng] 00:27:07,136 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a300a80 - End of configuration.
[testng] [2024-03-16 00:27:07,174] [pool-1-thread-11] Initializing /data/fluoview/Sample_TwoCH.TIF:
[testng] 00:27:07,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:27:07,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:07,175 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-16_00-27-07.log]
[testng] 00:27:07,175 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4161d894 - End of configuration.
[testng] [2024-03-16 00:27:07,587] [pool-1-thread-10] Initializing /data/iplab/Chromosomes.IPL:
[testng] 00:27:07,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:27:07,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:07,588 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-16_00-27-07.log]
[testng] 00:27:07,588 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e883053 - End of configuration.
[testng] [2024-03-16 00:27:07,609] [pool-1-thread-9] Initializing /data/iplab/Blend_Fitc.IPL:
[testng] 00:27:07,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:27:07,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:07,610 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-16_00-27-07.log]
[testng] 00:27:07,610 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ba92753 - End of configuration.
[testng] [2024-03-16 00:27:07,633] [pool-1-thread-8] Initializing /data/fluoview/sample_labled_XYZCh.tif:
[testng] 00:27:07,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:27:07,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:07,634 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-16_00-27-07.log]
[testng] 00:27:07,634 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5068b96f - End of configuration.
[testng] [2024-03-16 00:27:07,745] [pool-1-thread-7] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm:
[testng] 00:27:07,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:27:07,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:07,746 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-16_00-27-07.log]
[testng] 00:27:07,747 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f0da17 - End of configuration.
[testng] [2024-03-16 00:27:08,260] [pool-1-thread-6] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3:
[testng] 00:27:08,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:27:08,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:08,261 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-16_00-27-08.log]
[testng] 00:27:08,262 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cb6e7eb - End of configuration.
[testng] [2024-03-16 00:27:08,323] [pool-1-thread-5] Initializing /data/iplab/Blend_DIC.IPL:
[testng] 00:27:08,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:27:08,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:08,324 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-16_00-27-08.log]
[testng] 00:27:08,324 |-INFO in ch.qos.logback.core.sift.SiftProcessor@102ebc8c - End of configuration.
[testng] [2024-03-16 00:27:08,372] [pool-1-thread-4] Initializing /data/iplab/10x Blood and Bacteria.IPL:
[testng] 00:27:08,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:27:08,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:08,373 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-16_00-27-08.log]
[testng] 00:27:08,374 |-INFO in ch.qos.logback.core.sift.SiftProcessor@330d4d34 - End of configuration.
[testng] [2024-03-16 00:27:08,442] [pool-1-thread-3] Initializing /data/fluoview/sample_labled_XYZTCh.tif:
[testng] 00:27:08,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:27:08,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:08,443 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-16_00-27-08.log]
[testng] 00:27:08,444 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54fe9db0 - End of configuration.
[testng] [2024-03-16 00:27:08,672] [pool-1-thread-2] Initializing /data/fluoview/sample_labled_XYTCh.tif:
[testng] 00:27:08,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:27:08,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:08,673 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-16_00-27-08.log]
[testng] 00:27:08,674 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c1a9a74 - End of configuration.
[testng] [2024-03-16 00:27:11,010] [pool-1-thread-12] Initializing /data/fluoview/SpineAnimation.tif:
[testng] [2024-03-16 00:27:11,129] [pool-1-thread-10] Initializing /data/fluoview/SpineAnimation.avi:
[testng] [2024-03-16 00:27:11,239] [pool-1-thread-6] Initializing /data/iplab/Blend_Dapi.IPL:
[testng] [2024-03-16 00:27:11,271] [pool-1-thread-5] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm:
[testng] [2024-03-16 00:27:11,515] [pool-1-thread-9] Initializing /data/iplab/16Bit XRay.IPL:
[testng] [2024-03-16 00:27:11,541] [pool-1-thread-4] Initializing /data/fluoview/Sample_XT.tif:
[testng] [2024-03-16 00:27:12,050] [pool-1-thread-8] Initializing /data/iplab/3t3 Cell.IPL:
[testng] [2024-03-16 00:27:12,099] [pool-1-thread-2] Initializing /data/fluoview/Sample_XYT.TIF:
[testng] [2024-03-16 00:27:12,330] [pool-1-thread-3] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3:
[testng] [2024-03-16 00:27:12,376] [pool-1-thread-1] Initializing /data/iplab/Actin.IPL:
[testng] [2024-03-16 00:27:12,410] [pool-1-thread-11] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3:
[testng] [2024-03-16 00:27:12,924] [pool-1-thread-9] Initializing /data/iplab/Blend_Final.IPL:
[testng] [2024-03-16 00:27:13,037] [pool-1-thread-6] Initializing /data/iplab/Blend_Tritc.IPL:
[testng] [2024-03-16 00:27:13,400] [pool-1-thread-8] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm:
[testng] [2024-03-16 00:27:13,636] [pool-1-thread-1] Initializing /data/fluoview/Sample_ThreeCH.TIF:
[testng] [2024-03-16 00:27:13,911] [pool-1-thread-11] Initializing /data/iplab/Color Image.IPL:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1484, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 57 seconds
Finished: SUCCESS