Started by upstream project "BIOFORMATS-test-repo" build number 206
originally caused by:
Started by upstream project "Trigger" build number 232
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins4454115416007117497.sh
+ '[' imagepro = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_32774_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 04:41:37,352 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 04:41:37,353 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
[testng] 04:41:37,353 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:41:37,354 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:41:37,355 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 04:41:37,355 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 04:41:37,356 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 04:41:37,356 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:41:37,356 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:41:37,357 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 04:41:37,357 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 04:41:37,357 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 04:41:37,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 04:41:37,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 04:41:37,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 04:41:37,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 04:41:37,558 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 04:41:37,558 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 04:41:37,558 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 04:41:37,559 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 04:41:37,559 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
[testng] 04:41:37,559 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
[testng] 04:41:37,559 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 203 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-01 04:41:37,568] [main] java.version = 11.0.16
[testng] 04:41:37,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 04:41:37,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:41:37,614 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-01_04-41-37.log]
[testng] 04:41:37,616 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-10-01 04:41:37,618] [main] testng.directory = /data
[testng] [2024-10-01 04:41:37,618] [main] testng.configDirectory = /config
[testng] [2024-10-01 04:41:37,628] [main] testng.multiplier = 1.0
[testng] [2024-10-01 04:41:37,629] [main] testng.in-memory = false
[testng] [2024-10-01 04:41:37,630] [main] testng.allow-missing = false
[testng] [2024-10-01 04:41:37,630] [main] user.language = en
[testng] [2024-10-01 04:41:37,630] [main] user.country = ${user.country}
[testng] [2024-10-01 04:41:37,630] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-01 04:41:41,238] [main] ----------------------------------------
[testng] [2024-10-01 04:41:41,238] [main] Total files: 22
[testng] [2024-10-01 04:41:41,238] [main] Scan time: 3.608 s (164 ms/file)
[testng] [2024-10-01 04:41:41,238] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-01 04:41:54,106] [pool-1-thread-1] Initializing /data/converted/dub01.pic:
[testng] 04:41:54,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 04:41:54,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:41:54,109 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-01_04-41-54.log]
[testng] 04:41:54,110 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b52701b - End of configuration.
[testng] [2024-10-01 04:41:54,368] [pool-1-thread-12] Initializing /data/converted/clown8c.tif:
[testng] 04:41:54,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 04:41:54,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:41:54,370 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-01_04-41-54.log]
[testng] 04:41:54,370 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35503e90 - End of configuration.
[testng] [2024-10-01 04:41:55,002] [pool-1-thread-11] Initializing /data/converted/clown.ipw:
[testng] 04:41:55,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 04:41:55,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:41:55,003 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-01_04-41-55.log]
[testng] 04:41:55,004 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e77f532 - End of configuration.
[testng] [2024-10-01 04:41:55,242] [pool-1-thread-10] Initializing /data/samples/HEART.SEQ:
[testng] 04:41:55,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 04:41:55,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:41:55,243 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-01_04-41-55.log]
[testng] 04:41:55,243 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fa03425 - End of configuration.
[testng] [2024-10-01 04:41:55,518] [pool-1-thread-9] Initializing /data/converted/mitosis-test.ipw:
[testng] 04:41:55,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 04:41:55,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:41:55,519 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-01_04-41-55.log]
[testng] 04:41:55,519 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56d0cb3c - End of configuration.
[testng] [2024-10-01 04:41:55,793] [pool-1-thread-8] Initializing /data/converted/dub01.seq:
[testng] 04:41:55,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 04:41:55,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:41:55,794 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-01_04-41-55.log]
[testng] 04:41:55,794 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68b2cb6d - End of configuration.
[testng] [2024-10-01 04:41:56,097] [pool-1-thread-7] Initializing /data/alex/AFAset0003.ips:
[testng] 04:41:56,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 04:41:56,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:41:56,098 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-01_04-41-56.log]
[testng] 04:41:56,099 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14e0307b - End of configuration.
[testng] [2024-10-01 04:41:56,360] [pool-1-thread-6] Initializing /data/converted/clown.tif:
[testng] 04:41:56,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 04:41:56,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:41:56,361 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-01_04-41-56.log]
[testng] 04:41:56,361 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17be8144 - End of configuration.
[testng] [2024-10-01 04:41:56,698] [pool-1-thread-5] Initializing /data/xiuwen/head2.seq:
[testng] 04:41:56,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 04:41:56,699 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:41:56,699 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-01_04-41-56.log]
[testng] 04:41:56,699 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b43939a - End of configuration.
[testng] [2024-10-01 04:41:57,103] [pool-1-thread-4] Initializing /data/converted/NESb_C2_TP7.ipw:
[testng] 04:41:57,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 04:41:57,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:41:57,104 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-01_04-41-57.log]
[testng] 04:41:57,104 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60cb4eda - End of configuration.
[testng] [2024-10-01 04:41:57,383] [pool-1-thread-3] Initializing /data/samples/FLDUAL.TIF:
[testng] 04:41:57,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 04:41:57,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:41:57,385 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-01_04-41-57.log]
[testng] 04:41:57,385 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d72df82 - End of configuration.
[testng] [2024-10-01 04:41:58,065] [pool-1-thread-2] Initializing /data/samples/TISSUE.TIF:
[testng] 04:41:58,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 04:41:58,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:41:58,066 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-01_04-41-58.log]
[testng] 04:41:58,066 |-INFO in ch.qos.logback.core.sift.SiftProcessor@190a1859 - End of configuration.
[testng] [2024-10-01 04:42:01,958] [pool-1-thread-11] Initializing /data/converted/NESb_C2_TP7.seq:
[testng] [2024-10-01 04:42:02,239] [pool-1-thread-9] Initializing /data/converted/clown8c.seq:
[testng] [2024-10-01 04:42:02,515] [pool-1-thread-6] Initializing /data/samples/PROBE.TIF:
[testng] [2024-10-01 04:42:02,813] [pool-1-thread-1] Initializing /data/converted/NESb_C2_TP7.tiff:
[testng] [2024-10-01 04:42:03,590] [pool-1-thread-8] Initializing /data/converted/mitosis-test.seq:
[testng] [2024-10-01 04:42:03,888] [pool-1-thread-10] Initializing /data/converted/dub01.ipw:
[testng] [2024-10-01 04:42:04,197] [pool-1-thread-4] Initializing /data/converted/clown.seq:
[testng] [2024-10-01 04:42:05,065] [pool-1-thread-12] Initializing /data/converted/mitosis-test.tif:
[testng] [2024-10-01 04:42:06,492] [pool-1-thread-2] Initializing /data/converted/clown8c.ipw:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 57 seconds
Finished: SUCCESS