Started by upstream project "BIOFORMATS-test-repo" build number 207
originally caused by:
Started by upstream project "Trigger" build number 233
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins702444419387669587.sh
+ '[' pcx = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_32781_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:40:23,267 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:40:23,268 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 01:40:23,268 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:40:23,269 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:40:23,269 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:40:23,269 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:40:23,270 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:40:23,270 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:40:23,270 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:40:23,271 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:40:23,271 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:40:23,271 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:40:23,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:40:23,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:40:23,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:40:23,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:40:23,453 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:40:23,453 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:40:23,453 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:40:23,454 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:40:23,454 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 01:40:23,454 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 01:40:23,455 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 184 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-02 01:40:23,463] [main] java.version = 17.0.2
[testng] 01:40:23,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:40:23,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:40:23,507 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-02_01-40-23.log]
[testng] 01:40:23,508 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-10-02 01:40:23,510] [main] testng.directory = /data
[testng] [2024-10-02 01:40:23,510] [main] testng.configDirectory = /config
[testng] [2024-10-02 01:40:23,518] [main] testng.multiplier = 1.0
[testng] [2024-10-02 01:40:23,519] [main] testng.in-memory = false
[testng] [2024-10-02 01:40:23,519] [main] testng.allow-missing = false
[testng] [2024-10-02 01:40:23,519] [main] user.language = en
[testng] [2024-10-02 01:40:23,519] [main] user.country = ${user.country}
[testng] [2024-10-02 01:40:23,519] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-02 01:40:26,208] [main] ----------------------------------------
[testng] [2024-10-02 01:40:26,208] [main] Total files: 36
[testng] [2024-10-02 01:40:26,209] [main] Scan time: 2.688 s (74 ms/file)
[testng] [2024-10-02 01:40:26,209] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 35 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-02 01:40:30,921] [pool-1-thread-1] Initializing /data/generated/mri-stack17.pcx:
[testng] 01:40:30,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:40:30,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:40:30,923 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-02_01-40-30.log]
[testng] 01:40:30,923 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b79299b - End of configuration.
[testng] [2024-10-02 01:40:30,981] [pool-1-thread-12] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx:
[testng] 01:40:30,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:40:30,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:40:30,983 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-02_01-40-30.log]
[testng] 01:40:30,983 |-INFO in ch.qos.logback.core.sift.SiftProcessor@740b3ca0 - End of configuration.
[testng] [2024-10-02 01:40:30,996] [pool-1-thread-11] Initializing /data/generated/mri-stack16.pcx:
[testng] 01:40:30,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:40:30,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:40:30,998 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-02_01-40-30.log]
[testng] 01:40:30,998 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74045161 - End of configuration.
[testng] [2024-10-02 01:40:31,010] [pool-1-thread-10] Initializing /data/generated/mri-stack0.pcx:
[testng] 01:40:31,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:40:31,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:40:31,010 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-02_01-40-31.log]
[testng] 01:40:31,011 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18c55b25 - End of configuration.
[testng] [2024-10-02 01:40:31,019] [pool-1-thread-9] Initializing /data/generated/mri-stack12.pcx:
[testng] 01:40:31,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:40:31,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:40:31,020 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-02_01-40-31.log]
[testng] 01:40:31,020 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e5d6738 - End of configuration.
[testng] [2024-10-02 01:40:31,030] [pool-1-thread-8] Initializing /data/generated/mri-stack26.pcx:
[testng] 01:40:31,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:40:31,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:40:31,031 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-02_01-40-31.log]
[testng] 01:40:31,031 |-INFO in ch.qos.logback.core.sift.SiftProcessor@611949f7 - End of configuration.
[testng] [2024-10-02 01:40:31,039] [pool-1-thread-7] Initializing /data/generated/mri-stack21.pcx:
[testng] 01:40:31,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:40:31,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:40:31,040 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-02_01-40-31.log]
[testng] 01:40:31,040 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46a29d39 - End of configuration.
[testng] [2024-10-02 01:40:31,049] [pool-1-thread-6] Initializing /data/josh/Screenshots/leica-lif.pcx:
[testng] 01:40:31,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:40:31,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:40:31,050 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-02_01-40-31.log]
[testng] 01:40:31,050 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b002e0d - End of configuration.
[testng] [2024-10-02 01:40:31,062] [pool-1-thread-5] Initializing /data/generated/mri-stack25.pcx:
[testng] 01:40:31,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:40:31,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:40:31,063 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-02_01-40-31.log]
[testng] 01:40:31,063 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48b10ec6 - End of configuration.
[testng] [2024-10-02 01:40:31,072] [pool-1-thread-4] Initializing /data/generated/mri-stack3.pcx:
[testng] 01:40:31,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:40:31,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:40:31,073 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-02_01-40-31.log]
[testng] 01:40:31,073 |-INFO in ch.qos.logback.core.sift.SiftProcessor@443be920 - End of configuration.
[testng] [2024-10-02 01:40:31,081] [pool-1-thread-3] Initializing /data/generated/mri-stack5.pcx:
[testng] 01:40:31,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:40:31,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:40:31,082 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-02_01-40-31.log]
[testng] 01:40:31,082 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22f74e8f - End of configuration.
[testng] [2024-10-02 01:40:31,090] [pool-1-thread-2] Initializing /data/generated/mri-stack15.pcx:
[testng] 01:40:31,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:40:31,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:40:31,091 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-02_01-40-31.log]
[testng] 01:40:31,091 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d178726 - End of configuration.
[testng] [2024-10-02 01:40:34,528] [pool-1-thread-7] Initializing /data/generated/mri-stack8.pcx:
[testng] [2024-10-02 01:40:34,537] [pool-1-thread-8] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx:
[testng] [2024-10-02 01:40:34,548] [pool-1-thread-1] Initializing /data/generated/mri-stack6.pcx:
[testng] [2024-10-02 01:40:34,557] [pool-1-thread-4] Initializing /data/generated/mri-stack22.pcx:
[testng] [2024-10-02 01:40:34,565] [pool-1-thread-10] Initializing /data/generated/mri-stack2.pcx:
[testng] [2024-10-02 01:40:34,573] [pool-1-thread-9] Initializing /data/generated/mri-stack19.pcx:
[testng] [2024-10-02 01:40:34,580] [pool-1-thread-5] Initializing /data/josh/Screenshots/biorad color off.pcx:
[testng] [2024-10-02 01:40:34,602] [pool-1-thread-11] Initializing /data/generated/mri-stack10.pcx:
[testng] [2024-10-02 01:40:34,610] [pool-1-thread-2] Initializing /data/generated/mri-stack9.pcx:
[testng] [2024-10-02 01:40:34,703] [pool-1-thread-3] Initializing /data/generated/mri-stack11.pcx:
[testng] [2024-10-02 01:40:34,710] [pool-1-thread-6] Initializing /data/generated/mri-stack18.pcx:
[testng] [2024-10-02 01:40:34,717] [pool-1-thread-12] Initializing /data/josh/Screenshots/nd2 color.pcx:
[testng] [2024-10-02 01:40:35,574] [pool-1-thread-9] Initializing /data/josh/Screenshots/epscolor.pcx:
[testng] [2024-10-02 01:40:35,589] [pool-1-thread-6] Initializing /data/generated/mri-stack1.pcx:
[testng] [2024-10-02 01:40:35,758] [pool-1-thread-7] Initializing /data/josh/Screenshots/fv1000color.pcx:
[testng] [2024-10-02 01:40:35,785] [pool-1-thread-2] Initializing /data/josh/Screenshots/deltavision.pcx:
[testng] [2024-10-02 01:40:35,804] [pool-1-thread-3] Initializing /data/generated/mri-stack4.pcx:
[testng] [2024-10-02 01:40:35,837] [pool-1-thread-11] Initializing /data/generated/mri-stack23.pcx:
[testng] [2024-10-02 01:40:35,864] [pool-1-thread-10] Initializing /data/generated/mri-stack24.pcx:
[testng] [2024-10-02 01:40:35,890] [pool-1-thread-1] Initializing /data/generated/mri-stack20.pcx:
[testng] [2024-10-02 01:40:35,907] [pool-1-thread-4] Initializing /data/generated/mri-stack13.pcx:
[testng] [2024-10-02 01:40:36,192] [pool-1-thread-6] Initializing /data/generated/mri-stack14.pcx:
[testng] [2024-10-02 01:40:36,338] [pool-1-thread-8] Initializing /data/generated/mri-stack7.pcx:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1855, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 18 seconds
Finished: SUCCESS