Started by upstream project "BIOFORMATS-test-repo" build number 207
originally caused by:
 Started by upstream project "Trigger" build number 233
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins16068757889098297601.sh
+ '[' zip = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_32802_merge_ci -v /uod/idr/repos/curated/zip:/data -v /uod/idr-scratch/merge-ci/curated/zip:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 01:46:56,327 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:46:56,329 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
   [testng] 01:46:56,329 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:46:56,329 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:46:56,330 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:46:56,330 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:46:56,330 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:46:56,330 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:46:56,331 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:46:56,331 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:46:56,332 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:46:56,332 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:46:56,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:46:56,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:46:56,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:46:56,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:46:56,525 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:46:56,525 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:46:56,525 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:46:56,525 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:46:56,525 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
   [testng] 01:46:56,526 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
   [testng] 01:46:56,526 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 195 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-10-02 01:46:56,536] [main] java.version = 17.0.2
   [testng] 01:46:56,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:46:56,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:46:56,580 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-02_01-46-56.log]
   [testng] 01:46:56,581 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
   [testng] [2024-10-02 01:46:56,583] [main] testng.directory = /data
   [testng] [2024-10-02 01:46:56,584] [main] testng.configDirectory = /config
   [testng] [2024-10-02 01:46:56,592] [main] testng.multiplier = 1.0
   [testng] [2024-10-02 01:46:56,593] [main] testng.in-memory = false
   [testng] [2024-10-02 01:46:56,593] [main] testng.allow-missing = false
   [testng] [2024-10-02 01:46:56,593] [main] user.language = en
   [testng] [2024-10-02 01:46:56,593] [main] user.country = ${user.country}
   [testng] [2024-10-02 01:46:56,593] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-10-02 01:46:58,898] [main] ----------------------------------------
   [testng] [2024-10-02 01:46:58,898] [main] Total files: 22
   [testng] [2024-10-02 01:46:58,898] [main] Scan time: 2.304 s (104 ms/file)
   [testng] [2024-10-02 01:46:58,899] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 22 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-10-02 01:49:45,693] [pool-1-thread-1] Initializing /data/imagej/fat-cells.zip: 
   [testng] 01:49:45,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:49:45,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:45,695 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-02_01-49-45.log]
   [testng] 01:49:45,695 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3804373c - End of configuration.
   [testng] [2024-10-02 01:49:52,611] [pool-1-thread-12] Initializing /data/imagej/gel-electrophoresis.zip: 
   [testng] 01:49:52,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:49:52,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:52,612 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-02_01-49-52.log]
   [testng] 01:49:52,613 |-INFO in ch.qos.logback.core.sift.SiftProcessor@436c8730 - End of configuration.
   [testng] [2024-10-02 01:49:58,160] [pool-1-thread-11] Initializing /data/imagej/3D_Chromosome.zip: 
   [testng] 01:49:58,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:49:58,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:58,162 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-02_01-49-58.log]
   [testng] 01:49:58,162 |-INFO in ch.qos.logback.core.sift.SiftProcessor@602431cf - End of configuration.
   [testng] [2024-10-02 01:50:02,321] [pool-1-thread-10] Initializing /data/imagej/xrays.zip: 
   [testng] 01:50:02,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:50:02,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:50:02,321 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-02_01-50-02.log]
   [testng] 01:50:02,322 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68b25825 - End of configuration.
   [testng] [2024-10-02 01:50:05,343] [pool-1-thread-9] Initializing /data/imagej/flybrain.zip: 
   [testng] 01:50:05,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:50:05,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:50:05,344 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-02_01-50-05.log]
   [testng] 01:50:05,344 |-INFO in ch.qos.logback.core.sift.SiftProcessor@551a3e8a - End of configuration.
   [testng] [2024-10-02 01:50:18,412] [pool-1-thread-8] Initializing /data/imagej/m51.zip: 
   [testng] 01:50:18,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:50:18,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:50:18,414 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-02_01-50-18.log]
   [testng] 01:50:18,414 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f4d841e - End of configuration.
   [testng] [2024-10-02 01:50:21,564] [pool-1-thread-7] Initializing /data/imagej/se3.zip: 
   [testng] 01:50:21,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:50:21,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:50:21,565 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-02_01-50-21.log]
   [testng] 01:50:21,565 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73a7d506 - End of configuration.
   [testng] [2024-10-02 01:50:36,918] [pool-1-thread-6] Initializing /data/imagej/cheetah_256_8.tif.zip: 
   [testng] 01:50:36,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:50:36,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:50:36,919 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-02_01-50-36.log]
   [testng] 01:50:36,919 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50041011 - End of configuration.
   [testng] [2024-10-02 01:50:42,552] [pool-1-thread-5] Initializing /data/imagej/Rat_Hippocampal_Neuron.zip: 
   [testng] 01:50:42,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:50:42,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:50:42,553 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-02_01-50-42.log]
   [testng] 01:50:42,553 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3641c20 - End of configuration.
   [testng] [2024-10-02 01:50:48,052] [pool-1-thread-4] Initializing /data/imagej/RatBrain.zip: 
   [testng] 01:50:48,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:50:48,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:50:48,053 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-02_01-50-48.log]
   [testng] 01:50:48,053 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fe7b522 - End of configuration.
   [testng] [2024-10-02 01:50:51,903] [pool-1-thread-3] Initializing /data/imagej/4D-Stack(256x256x20x10).zip: 
   [testng] 01:50:51,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:50:51,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:50:51,904 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-02_01-50-51.log]
   [testng] 01:50:51,905 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6156bc8f - End of configuration.
   [testng] [2024-10-02 01:51:03,838] [pool-1-thread-2] Initializing /data/imagej/hela-cells.zip: 
   [testng] 01:51:03,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:51:03,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:51:03,840 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-02_01-51-03.log]
   [testng] 01:51:03,840 |-INFO in ch.qos.logback.core.sift.SiftProcessor@606b1490 - End of configuration.
   [testng] [2024-10-02 01:51:44,581] [pool-1-thread-10] Initializing /data/samples/bat-cochlea-volume.zip: 
   [testng] [2024-10-02 01:51:51,983] [pool-1-thread-8] Initializing /data/imagej/Rat_Hippocampal_Neuron2.zip: 
   [testng] [2024-10-02 01:52:08,848] [pool-1-thread-11] Initializing /data/imagej/confocal-stack.zip: 
   [testng] [2024-10-02 01:52:23,629] [pool-1-thread-4] Initializing /data/imagej/scala-media.zip: 
   [testng] [2024-10-02 01:52:28,493] [pool-1-thread-6] Initializing /data/samples/sdub.zip: 
   [testng] [2024-10-02 01:52:41,722] [pool-1-thread-2] Initializing /data/imagej/mri-stack.zip: 
   [testng] [2024-10-02 01:52:49,583] [pool-1-thread-6] Initializing /data/imagej/blood-brain-barrier.zip: 
   [testng] [2024-10-02 01:53:11,469] [pool-1-thread-5] Initializing /data/imagej/watershed-animation.zip: 
   [testng] [2024-10-02 01:53:15,977] [pool-1-thread-12] Initializing /data/imagej/FluorescentCells.zip: 
   [testng] [2024-10-02 01:53:40,308] [pool-1-thread-4] Initializing /data/imagej/confocal-series.zip: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1166, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 11 minutes 23 seconds
Finished: SUCCESS